genome.fa.s212.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  24  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5668906--5669101	74	2.6	73	74	11	173	48	5	10	35	1.60
5669054--5669158	40	2.6	41	80	3	106	48	5	12	33	1.64
5669068--5669183	40	2.9	40	76	5	110	44	6	12	36	1.68
5669204--5669294	43	2.2	41	82	9	105	49	5	12	32	1.63
5669323--5669385	23	2.8	22	77	15	65	53	3	6	36	1.42
5669247--5669438	72	2.7	72	78	8	192	51	5	9	33	1.58
5669391--5669478	40	2.2	39	83	2	104	45	6	13	34	1.70
5669204--5669548	184	1.9	185	81	6	430	49	5	10	35	1.60
5669348--5669567	112	2.0	112	88	0	334	48	5	9	35	1.60
5669609--5669680	37	1.9	37	85	0	99	47	8	2	41	1.48
5671587--5671625	21	1.9	19	85	10	51	17	10	0	71	1.12
5674758--5674789	11	2.9	11	95	0	55	46	0	18	34	1.49
5678046--5678234	74	2.6	71	83	5	218	49	2	8	39	1.48
5678084--5678186	25	4.2	24	69	14	75	49	1	7	40	1.43
5678192--5678298	40	2.7	40	79	2	108	48	8	10	32	1.67
5678276--5678489	115	1.9	114	82	4	270	50	5	7	36	1.54
5678387--5678558	75	2.3	74	84	6	215	51	4	9	34	1.55
5678312--5678671	188	1.9	184	83	6	456	51	5	8	34	1.56
5678497--5678740	109	2.2	112	78	9	248	52	7	6	33	1.57
5678943--5679002	18	3.5	17	75	11	61	31	10	10	48	1.70
5679235--5679275	21	2.0	20	86	9	57	53	9	9	26	1.65
5681111--5681163	7	7.6	7	86	0	52	32	7	18	41	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5681115--5681162	14	3.4	14	88	0	69	33	4	18	43	1.69
5681115--5681163	21	2.3	21	82	0	62	32	6	18	42	1.75
5684612--5684825	106	2.0	106	99	0	419	20	19	24	35	1.95
5688024--5688065	13	3.2	13	83	13	50	23	2	0	73	0.94
5700121--5700152	6	5.5	6	96	3	57	68	0	0	31	0.90
5700490--5700523	16	2.1	17	88	5	52	76	0	8	14	1.01
5702683--5702757	34	2.2	33	83	6	96	38	9	14	37	1.79
5702803--5702874	33	2.2	33	85	5	92	43	13	18	25	1.86
5704179--5705132	161	5.9	161	80	3	845	43	13	8	34	1.74
5704179--5705114	321	2.9	320	78	5	906	43	13	8	34	1.74
5704235--5705132	482	1.9	481	79	4	1040	43	13	8	34	1.74
5706278--5706314	13	2.8	13	87	0	56	62	5	8	24	1.44
5712459--5712492	14	2.4	14	100	0	68	23	0	23	52	1.47
5712487--5712584	28	3.5	28	85	2	126	25	3	23	47	1.66
5712579--5712636	12	4.7	12	80	16	64	22	8	27	41	1.83
5712579--5712642	13	5.1	13	81	5	78	20	9	26	43	1.82
5712585--5712642	25	2.2	26	84	6	73	18	10	25	44	1.82
5715809--5715877	35	2.0	35	94	0	120	31	17	15	34	1.92
5716343--5716474	61	2.1	62	79	10	146	33	16	13	36	1.88
5718333--5718357	13	1.9	13	100	0	50	40	12	0	48	1.40
5723283--5723310	2	14.0	2	100	0	56	50	0	0	50	1.00
5725387--5725445	21	2.8	21	77	7	66	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5725422--5725514	42	2.2	41	80	16	102	54	3	0	41	1.16
5725430--5725527	43	2.4	41	75	21	98	56	3	0	40	1.15
5725915--5725953	20	2.0	19	85	14	53	38	0	0	61	0.96
5727193--5727244	21	2.5	21	72	9	54	55	7	1	34	1.39
5727771--5727810	22	1.9	20	90	10	62	45	2	0	52	1.14
5728717--5728774	25	2.3	26	80	14	68	41	3	5	50	1.42
5734906--5735040	71	1.9	71	81	3	164	48	5	10	36	1.60
5736010--5736065	2	28.0	2	88	0	85	44	0	0	55	0.99
5736616--5736656	17	2.5	17	84	4	57	43	4	0	51	1.23
5750705--5750729	11	2.3	11	100	0	50	48	8	16	28	1.74
5753444--5753577	71	1.9	71	100	0	268	28	27	27	16	1.97
5762940--5762964	13	1.9	13	100	0	50	20	24	16	40	1.91
5764692--5764722	15	2.1	15	93	0	53	9	0	38	51	1.35
5764799--5764850	14	3.7	14	73	0	59	13	0	32	53	1.40
5764837--5764920	30	2.8	31	76	18	86	20	3	28	47	1.66
5764877--5764940	30	2.2	29	86	8	85	15	3	34	46	1.62
5765111--5765151	11	3.9	11	84	9	59	31	0	2	65	1.05
5766917--5767014	37	2.6	37	80	0	115	46	10	21	21	1.80
5767247--5767644	131	3.0	129	80	4	431	39	14	20	25	1.91
5767574--5767656	22	3.8	21	80	10	78	31	13	25	30	1.93
5767181--5767634	132	3.4	132	79	4	452	38	14	20	27	1.91
5767476--5767780	154	2.0	153	83	3	380	37	15	21	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5767316--5768188	286	3.1	282	81	4	914	38	14	20	26	1.91
5767601--5768304	132	5.2	132	70	12	420	40	14	19	25	1.90
5767862--5767911	22	2.3	22	92	0	82	30	10	24	36	1.88
5767743--5768085	154	2.2	154	82	4	406	38	13	20	27	1.90
5768671--5768706	18	2.0	18	88	0	54	36	5	25	33	1.79
5776903--5776975	22	3.5	20	75	16	67	12	2	34	50	1.54
5776995--5777048	14	3.9	14	70	0	54	16	0	29	53	1.43
5777069--5777140	16	4.9	14	77	17	67	15	4	38	41	1.66
5777069--5777153	29	2.9	29	85	5	109	16	3	38	41	1.66
5776997--5777153	30	5.3	31	75	11	109	17	3	33	44	1.67
5778254--5778292	20	2.0	20	89	0	60	17	0	15	66	1.25
5778720--5778749	10	2.8	11	90	10	53	23	10	40	26	1.86
5783169--5783218	25	2.0	25	100	0	100	32	8	12	48	1.69
5793299--5793354	28	2.0	28	89	0	85	51	3	30	14	1.59
5795738--5795827	31	3.0	30	74	12	85	47	0	6	45	1.29
5798130--5798159	8	3.8	8	90	0	51	83	0	3	13	0.77
5799251--5799329	29	2.6	29	84	6	86	50	6	0	43	1.27
5799276--5799335	29	2.1	29	90	0	93	46	6	0	46	1.29
5801102--5801126	11	2.3	11	100	0	50	32	0	0	68	0.90
5801134--5801178	16	2.9	15	84	12	56	42	8	6	42	1.62
5801671--5801714	19	2.3	19	84	0	61	18	0	31	50	1.47
5801789--5801991	20	10.4	20	76	7	148	19	5	29	45	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5804694--5804801	56	2.0	54	88	3	162	24	12	6	57	1.58
5804742--5804840	46	2.2	45	82	10	114	24	7	7	61	1.47
5805111--5805169	25	2.4	25	83	8	77	44	5	5	45	1.47
5806001--5806122	8	15.4	8	77	11	101	70	5	2	21	1.20
5805993--5806122	21	6.0	22	70	18	78	70	6	2	20	1.22
5806018--5806122	4	26.8	4	77	11	101	71	4	2	20	1.17
5806092--5806137	21	2.4	19	80	16	51	76	2	2	19	1.00
5806347--5806634	88	3.3	87	79	5	274	44	15	12	27	1.83
5806374--5806632	132	2.0	132	85	3	351	44	15	12	28	1.82
5806347--5806612	44	6.0	43	75	6	185	45	15	11	27	1.80
5806381--5806632	44	5.8	42	75	8	218	44	14	12	27	1.82
5806637--5806777	44	3.2	44	84	1	185	42	18	15	23	1.88
5807256--5807292	14	2.6	15	87	12	60	37	10	8	43	1.69
5807636--5807788	79	1.9	79	85	2	209	31	24	9	35	1.87
5808381--5808475	10	9.6	10	76	15	83	8	13	1	76	1.05
5808362--5808475	10	12.1	9	72	22	76	9	14	0	75	1.09
5813455--5813511	26	2.2	27	81	9	66	45	19	3	31	1.67
5813790--5813887	4	24.2	4	72	15	69	69	5	4	21	1.25
5813862--5813903	19	2.3	19	88	12	61	73	0	7	19	1.05
5816413--5816447	2	18.0	2	94	5	63	48	0	0	51	1.00
5816958--5816998	21	2.0	21	85	4	57	14	26	4	53	1.61
5817659--5817697	20	1.9	21	89	5	62	61	0	33	5	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5817852--5817921	10	6.9	10	75	8	70	81	0	17	1	0.77
5817847--5817894	22	2.2	22	92	7	80	85	0	14	0	0.60
5817846--5817910	32	1.9	36	70	17	50	81	0	18	0	0.69
5817844--5817923	29	2.5	31	76	17	85	80	0	18	1	0.79
5833322--5833565	49	4.9	49	74	6	150	31	11	15	41	1.82
5834977--5835031	14	3.9	14	78	7	58	80	0	20	0	0.72
5835059--5835120	16	3.9	15	83	10	70	72	0	24	3	0.99
5835093--5835135	23	1.9	22	85	4	59	81	0	16	2	0.79
5835077--5835135	20	3.2	17	77	15	64	79	0	18	1	0.81
5835067--5835140	16	4.6	16	79	12	62	77	0	18	4	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74