genome.fa.s212.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  48  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9798550--9798619	31	2.3	31	76	0	77	40	12	8	38	1.74
9801033--9801071	5	7.8	5	88	0	60	0	33	0	66	0.92
9803269--9803515	123	2.0	123	100	0	494	37	11	21	30	1.88
9807884--9807908	2	12.5	2	100	0	50	52	0	0	48	1.00
9808029--9808082	22	2.4	23	75	6	65	48	3	0	48	1.19
9808377--9808433	6	9.5	6	83	7	53	33	0	43	22	1.54
9808562--9808626	26	2.4	27	80	10	62	50	1	1	46	1.20
9811410--9811450	22	1.9	22	85	5	57	60	9	0	29	1.28
9812528--9812561	4	8.5	4	93	0	59	79	0	0	20	0.73
9812531--9812565	8	4.4	8	96	0	52	82	0	0	17	0.66
9814033--9814430	198	2.0	197	83	2	494	32	15	17	34	1.91
9819376--9819430	16	3.6	16	80	11	53	10	3	7	78	1.08
9819367--9819408	13	3.4	13	80	6	52	9	2	9	78	1.05
9819376--9819435	29	2.1	29	81	6	70	11	3	6	78	1.06
9822406--9822451	17	2.7	17	83	10	58	41	8	13	36	1.75
9824697--9824758	22	2.8	22	75	0	61	38	11	12	37	1.80
9824962--9825028	22	3.0	23	82	4	84	28	4	20	46	1.70
9825220--9825310	22	4.1	22	73	5	85	37	8	14	39	1.77
9824706--9825300	281	2.1	281	79	3	629	34	6	16	41	1.75
9826322--9826360	21	1.9	21	84	5	53	51	0	0	48	1.00
9826407--9826463	30	2.0	29	86	6	80	40	3	5	50	1.42
9829096--9829123	2	14.0	2	100	0	56	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9833703--9833733	2	15.5	2	100	0	62	51	0	0	48	1.00
9835340--9835432	32	3.1	29	77	9	87	27	1	5	65	1.21
9840333--9840446	34	3.3	34	66	20	99	35	14	9	40	1.79
9850521--9850545	12	2.1	12	100	0	50	32	16	8	44	1.76
9851468--9851523	28	1.9	30	82	7	71	28	12	8	50	1.70
9851662--9851707	21	2.2	21	84	0	56	60	8	2	28	1.38
9851703--9851761	18	3.4	17	77	13	57	66	5	3	25	1.28
9851774--9851820	19	2.4	19	89	3	67	57	2	2	38	1.23
9851822--9851873	21	2.5	21	79	17	63	57	1	3	36	1.28
9851829--9851876	11	4.5	11	78	5	53	54	2	4	39	1.32
9851919--9852015	21	4.9	18	73	14	59	55	5	3	36	1.38
9851956--9852012	20	2.8	21	81	5	71	56	3	5	35	1.39
9852039--9852130	26	3.5	26	70	5	69	54	1	2	42	1.19
9852156--9852212	8	7.0	8	76	11	53	59	3	0	36	1.14
9852148--9852202	25	2.2	25	77	6	58	67	1	1	29	1.11
9852171--9852205	18	1.9	18	94	0	61	60	0	0	40	0.97
9852567--9852933	10	37.8	9	67	15	137	36	1	7	54	1.40
9852597--9852772	47	3.8	43	76	12	138	34	2	5	57	1.35
9852748--9852829	41	2.0	41	83	4	103	41	0	7	51	1.30
9852566--9852930	19	18.8	19	68	16	101	36	1	7	54	1.40
9856859--9856891	12	2.6	13	90	4	50	84	3	9	3	0.82
9862202--9862247	10	4.6	10	100	0	92	30	0	19	50	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9865993--9866021	10	3.0	10	95	5	51	0	6	0	93	0.36
9875533--9875615	25	3.3	24	70	20	64	75	1	14	8	1.08
9875552--9875624	36	2.0	35	84	10	92	73	1	17	6	1.11
9881901--9881996	48	2.0	48	97	0	183	44	22	0	32	1.53
9889589--9889648	24	2.5	24	70	5	59	76	1	15	6	1.06
9889582--9889644	35	1.9	33	81	18	78	76	1	14	7	1.08
9895914--9896009	48	2.0	48	97	0	183	44	22	0	32	1.53
9912516--9912560	23	2.0	23	90	0	72	68	6	11	13	1.37
9913215--9913438	95	2.4	94	81	5	229	41	6	7	45	1.58
9913837--9913871	7	5.0	7	89	0	52	17	2	0	80	0.84
9914612--9914652	17	2.4	18	84	8	50	65	0	7	26	1.18
9915046--9915412	141	2.6	140	73	12	345	41	12	14	30	1.84
9915604--9915645	22	1.9	22	85	0	57	23	16	23	35	1.95
9915895--9916317	143	2.9	145	75	7	371	33	14	13	38	1.85
9916786--9916947	58	2.8	57	85	3	216	38	12	6	42	1.68
9916997--9917054	15	3.6	16	76	23	59	81	0	5	13	0.86
9916998--9917054	21	2.6	22	81	15	66	80	0	5	14	0.87
9916968--9917053	43	1.9	46	86	11	126	76	1	6	15	1.05
9916997--9917047	26	2.0	26	88	0	75	80	0	5	13	0.89
9917071--9917123	3	18.0	3	96	3	99	66	0	0	33	0.92
9917119--9917146	4	7.0	4	100	0	56	75	0	0	25	0.81
9923547--9923572	12	2.2	12	100	0	52	76	7	15	0	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9926285--9926327	22	2.0	22	90	0	68	67	6	11	13	1.41
9926966--9927195	95	2.4	93	78	9	225	39	6	8	45	1.61
9928795--9929132	141	2.4	139	75	8	290	43	13	13	29	1.83
9929317--9929403	22	3.9	22	66	8	59	27	17	20	34	1.95
9929653--9930073	141	2.9	145	76	8	380	33	14	12	38	1.85
9930547--9930703	58	2.7	57	93	3	251	36	13	6	43	1.69
9930751--9930807	16	3.6	15	83	9	69	78	0	5	15	0.91
9930722--9930807	21	3.9	21	79	13	84	75	1	6	16	1.07
9930831--9930857	3	9.0	3	100	0	54	66	0	0	33	0.92
9938990--9939031	22	1.9	22	85	0	57	23	16	23	35	1.95
9939280--9939697	143	2.9	143	75	8	354	33	14	12	38	1.85
9940180--9940334	59	2.7	57	91	5	242	36	12	6	44	1.68
9940381--9940520	18	6.9	18	74	16	75	72	1	2	22	1.05
9940352--9940421	13	4.9	13	73	21	52	77	1	5	15	1.03
9940457--9940494	3	13.0	3	94	5	69	65	0	0	34	0.93
9940457--9940490	17	2.0	17	100	0	68	64	0	0	35	0.94
9941673--9941705	10	3.3	10	100	0	66	21	18	18	42	1.89
9946939--9946964	12	2.2	12	100	0	52	76	7	15	0	0.99
9949675--9949719	23	2.0	23	95	0	81	68	8	11	11	1.39
9950375--9950570	94	2.1	94	85	0	257	36	8	9	44	1.68
9951758--9951797	17	2.4	18	84	12	50	65	2	5	27	1.27
9954157--9954194	20	1.9	20	94	0	67	50	36	0	13	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9954187--9954211	13	1.9	13	100	0	50	48	24	4	24	1.68
9954321--9954384	18	3.5	18	80	4	65	51	34	0	14	1.42
9954597--9954785	12	16.3	12	66	20	73	48	35	1	14	1.53
9954602--9954664	18	3.4	19	75	16	60	47	38	0	14	1.44
9954659--9954693	17	2.1	17	94	0	61	48	37	0	14	1.44
9954610--9954742	68	2.0	67	85	7	180	48	34	0	17	1.48
9954663--9954785	43	2.8	43	78	6	115	47	36	1	13	1.53
9954651--9954774	19	6.3	18	67	17	61	46	37	1	14	1.54
9960306--9960347	7	5.9	7	97	2	75	42	30	0	26	1.55
9960291--9960347	21	2.8	20	85	12	73	45	31	0	22	1.53
9960422--9960499	39	2.0	39	85	7	106	46	37	2	14	1.58
9960689--9960730	18	2.4	18	88	4	59	52	42	0	4	1.22
9960762--9960812	19	2.6	20	90	6	86	45	37	0	17	1.49
9960763--9960819	19	2.9	19	86	2	51	47	31	1	19	1.60
9960880--9960920	12	3.4	12	90	6	57	51	31	2	14	1.56
9960904--9960949	19	2.5	19	86	6	69	56	30	0	13	1.37
9960904--9960949	18	2.6	17	83	10	65	56	30	0	13	1.37
9961229--9961319	44	2.1	44	83	4	112	42	7	10	38	1.69
9973959--9974123	51	3.3	49	75	6	143	36	9	13	41	1.76
9973955--9974320	100	3.6	103	73	10	288	34	9	14	40	1.79
9973959--9974319	50	7.1	50	71	8	221	35	9	14	40	1.79
9974773--9975120	144	2.4	142	76	11	332	35	16	10	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9974846--9975108	143	1.8	143	81	8	318	34	16	10	38	1.83
9976663--9976716	26	2.1	26	89	0	81	50	37	1	11	1.49
9976683--9976763	19	4.2	19	72	9	74	48	30	2	18	1.61
9976759--9976822	19	3.3	19	84	4	74	43	32	0	23	1.54
9976779--9976900	19	6.5	19	72	11	83	50	29	0	18	1.53
9976885--9976987	12	8.9	12	64	23	51	50	34	0	14	1.43
9976874--9976927	25	2.2	24	81	12	65	51	33	0	14	1.43
9976898--9976973	30	2.6	29	77	10	82	52	34	0	13	1.40
9976933--9976987	25	2.3	24	84	12	69	49	32	0	18	1.48
9977093--9977127	18	1.9	18	88	0	52	60	34	0	5	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74