genome.fa.s212.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  12  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3413518--3413558	22	1.9	22	90	5	66	31	14	9	43	1.78
3413511--3413577	23	3.0	23	76	10	84	38	16	7	37	1.77
3413517--3413589	23	3.2	22	74	12	76	38	13	9	38	1.78
3413859--3413905	23	2.1	23	84	4	60	38	21	8	31	1.83
3414017--3414057	12	3.3	13	73	13	50	34	19	19	26	1.96
3414486--3414517	13	2.5	13	94	0	55	59	0	18	21	1.38
3417910--3417941	14	2.3	14	94	0	55	6	9	28	56	1.55
3419625--3419673	11	4.3	11	78	16	55	77	0	2	20	0.87
3419649--3419691	19	2.3	19	80	8	52	72	0	0	27	0.85
3420439--3420468	3	10.0	3	100	0	60	66	0	0	33	0.92
3424819--3424849	16	2.0	15	93	6	53	0	9	0	90	0.46
3425730--3425819	45	2.0	45	84	4	119	24	11	32	32	1.90
3426764--3426808	2	22.0	2	90	4	72	51	0	2	46	1.13
3427743--3427767	13	1.9	13	100	0	50	52	0	0	48	1.00
3429400--3429445	22	2.1	22	95	0	83	19	15	21	43	1.87
3432092--3432125	16	2.1	16	94	0	59	29	2	38	29	1.72
3435164--3435229	22	2.9	22	77	4	69	45	1	0	53	1.09
3435621--3435662	19	2.2	20	86	4	59	40	4	4	50	1.45
3438541--3438579	15	2.4	17	87	12	64	48	0	0	51	1.00
3441355--3441667	159	1.9	162	83	5	407	23	38	18	19	1.93
3442552--3442603	2	26.5	2	88	3	79	48	3	0	48	1.20
3443481--3443527	18	2.6	18	76	13	51	46	0	2	51	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3443444--3443525	30	2.7	30	70	11	76	43	1	2	52	1.22
3449792--3449831	2	20.0	2	89	0	62	0	45	2	52	1.14
3452788--3452826	2	20.0	2	94	5	71	48	0	0	51	1.00
3459360--3460290	485	1.9	485	85	1	1301	28	22	16	33	1.95
3463017--3463091	37	2.0	37	94	5	134	52	10	14	22	1.73
3468383--3468441	27	2.2	26	79	8	64	52	0	1	45	1.10
3468391--3468444	27	2.0	28	92	3	92	46	0	1	51	1.11
3468491--3468533	14	3.0	15	83	10	54	48	2	0	48	1.14
3469615--3469644	10	3.0	10	95	0	51	43	0	0	56	0.99
3473834--3473860	13	2.1	13	100	0	54	66	0	0	33	0.92
3473947--3474009	29	2.2	28	80	5	74	50	1	3	44	1.27
3476804--3476880	36	2.1	36	95	4	138	18	22	16	42	1.89
3479094--3479134	19	2.2	19	86	0	55	36	12	9	41	1.76
3479726--3479774	16	2.9	16	85	11	55	44	0	0	55	0.99
3479906--3479975	35	1.9	37	85	5	99	47	1	1	50	1.19
3479940--3479971	16	1.9	16	93	6	55	56	0	0	43	0.99
3482861--3482902	2	21.0	2	100	0	84	50	0	0	50	1.00
3484186--3484240	3	19.3	3	81	10	71	63	0	1	34	1.05
3484186--3484241	21	2.8	20	89	7	80	62	0	1	35	1.06
3484589--3484620	14	2.3	14	94	0	55	78	15	6	0	0.95
3485578--3485618	18	2.3	18	87	4	57	48	36	0	14	1.44
3485587--3485641	15	3.4	16	80	14	60	49	25	1	23	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3485651--3485743	43	2.1	43	82	5	107	47	29	1	22	1.58
3492502--3492979	33	14.5	33	79	6	436	31	20	14	33	1.93
3493502--3494064	121	4.7	121	93	0	905	33	15	15	34	1.90
3494040--3494122	22	3.7	23	79	6	82	27	24	20	27	1.99
3494195--3494326	22	6.0	22	82	5	133	28	19	18	33	1.95
3494297--3494534	110	2.2	110	83	1	298	24	19	15	40	1.91
3494540--3494606	23	3.0	23	93	2	109	22	16	25	35	1.94
3494803--3494852	20	2.5	20	81	18	68	58	0	0	42	0.98
3494858--3494900	21	2.0	21	86	8	61	86	2	4	6	0.79
3495209--3495240	14	2.3	14	94	0	55	78	15	6	0	0.95
3496202--3496241	17	2.3	18	87	8	57	50	35	0	15	1.44
3496226--3496299	15	4.9	15	80	3	87	51	21	2	24	1.61
3496225--3496299	30	2.5	31	89	4	118	50	22	2	24	1.62
3496338--3496442	14	7.1	14	67	12	50	51	30	0	17	1.52
3499743--3500057	33	9.7	32	83	5	325	29	20	15	33	1.94
3500577--3501140	121	4.7	121	90	1	855	34	15	14	34	1.89
3501111--3501203	22	4.2	22	83	0	114	31	20	12	35	1.90
3501160--3501407	110	2.3	110	83	1	300	25	18	16	39	1.91
3501372--3501455	43	2.0	43	87	0	123	25	17	22	34	1.96
3501661--3501710	20	2.5	20	81	18	68	58	0	0	42	0.98
3501716--3501759	21	2.1	21	87	8	63	86	2	4	6	0.77
3502067--3502098	14	2.3	14	94	0	55	78	9	6	6	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3503019--3503059	18	2.3	18	87	4	57	48	36	0	14	1.44
3503044--3503131	15	5.9	15	74	5	72	50	23	2	23	1.61
3503173--3503207	14	2.4	15	90	4	54	51	40	0	8	1.33
3508963--3509022	28	2.1	29	87	6	86	55	3	5	36	1.38
3509752--3509785	2	17.0	2	100	0	68	50	0	0	50	1.00
3510904--3510928	11	2.3	11	100	0	50	44	0	0	56	0.99
3510892--3510946	27	2.0	29	89	7	87	49	0	1	49	1.11
3510965--3511003	18	2.2	18	86	9	53	38	0	2	58	1.12
3510975--3511023	18	2.5	19	80	12	55	44	2	0	53	1.12
3511042--3511111	14	4.9	13	77	11	50	48	2	1	47	1.25
3516325--3516351	13	2.1	13	100	0	54	66	0	0	33	0.92
3516438--3516500	29	2.2	28	80	5	74	50	1	3	44	1.27
3518745--3518779	18	1.9	18	100	0	70	28	31	5	34	1.81
3519323--3519399	36	2.1	36	97	0	145	18	22	15	44	1.87
3522302--3522346	18	2.6	17	86	13	65	46	0	0	53	1.00
3522300--3522365	27	2.5	28	76	11	77	51	1	0	46	1.10
3522515--3522546	16	1.9	16	93	6	55	56	0	0	43	0.99
3525421--3525452	2	16.0	2	100	0	64	50	0	0	50	1.00
3530637--3530670	14	2.3	15	90	5	52	52	0	0	47	1.00
3553004--3553104	49	2.1	49	100	0	202	39	18	23	17	1.92
3568736--3568787	22	2.2	23	83	13	61	48	3	0	48	1.20
3574622--3574715	47	2.0	47	95	0	170	24	11	30	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3578075--3578128	17	2.8	20	86	10	69	74	7	0	18	1.05
3579019--3579068	23	2.1	24	81	3	57	6	4	10	80	1.02
3581094--3581153	29	2.1	29	96	0	111	33	26	0	40	1.57
3581437--3581461	2	12.5	2	100	0	50	0	0	48	52	1.00
3581463--3581490	2	14.0	2	100	0	56	50	0	50	0	1.00
3586099--3586157	27	2.1	27	84	9	75	42	0	1	55	1.09
3586099--3586169	27	2.6	27	79	4	70	45	0	1	53	1.09
3589265--3589521	130	2.0	132	87	1	374	38	15	20	25	1.92
3590774--3590798	1	25.0	1	100	0	50	100	0	0	0	0.00
3593397--3593429	15	2.2	15	94	0	57	0	15	0	84	0.61
3600809--3601305	215	2.3	215	78	7	490	32	10	5	52	1.58
3603861--3603914	18	2.9	18	76	15	65	42	9	14	33	1.78
3604395--3604440	19	2.4	19	96	0	83	45	0	4	50	1.21
3604408--3604513	34	3.1	33	68	17	83	39	7	3	49	1.49
3606016--3606071	28	2.0	28	82	0	67	25	1	1	71	1.05
3606151--3606301	59	2.5	61	82	8	177	45	5	11	36	1.66
3606121--3606353	60	4.1	57	76	12	187	50	5	9	34	1.59
3606269--3606354	27	3.2	26	71	21	77	51	5	9	33	1.58
3610288--3610346	17	3.7	16	75	13	50	79	1	8	10	1.00
3610286--3610346	24	2.5	24	84	7	79	77	1	9	11	1.07
3610288--3610350	31	2.1	29	85	5	81	79	1	7	11	1.00
3611723--3611783	17	3.6	17	69	8	52	26	14	16	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3611611--3611774	34	4.8	34	79	1	159	33	16	12	37	1.86
3611798--3611872	34	2.2	34	87	0	114	34	12	12	41	1.79
3611879--3611945	34	2.0	34	90	0	107	32	17	10	38	1.84
3611828--3611939	17	6.4	17	68	6	71	32	16	10	40	1.83
3612173--3612757	85	6.9	85	80	5	431	21	19	13	45	1.84
3612230--3612750	84	6.2	86	80	5	431	22	19	12	46	1.83
3612238--3612712	169	2.8	170	78	6	412	22	19	12	45	1.84
3613801--3613886	4	22.0	4	85	4	81	30	1	2	66	1.12
3613910--3614113	59	3.4	58	78	7	205	47	4	11	36	1.61
3618107--3618146	20	2.0	21	85	5	55	42	10	0	47	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74