genome.fa.s212.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  50  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10182466--10182528	12	5.2	12	84	9	74	66	3	1	28	1.16
10182473--10182528	3	18.7	3	89	7	87	67	1	0	30	1.01
10182462--10182541	9	7.9	11	82	12	52	67	2	1	28	1.11
10182651--10182695	23	2.0	23	90	0	72	22	24	33	20	1.97
10183395--10183447	20	3.1	16	84	13	54	75	5	1	16	1.08
10183404--10183450	25	2.0	22	88	12	67	76	4	2	17	1.04
10183766--10183895	45	3.0	43	69	9	118	39	21	16	23	1.92
10183827--10183965	45	3.1	45	64	10	113	37	22	13	26	1.91
10183766--10183975	89	2.4	89	87	1	298	40	21	14	23	1.91
10184219--10184259	20	2.0	20	85	9	55	34	24	9	31	1.88
10184230--10184268	20	2.0	20	89	0	60	33	20	12	33	1.91
10184272--10184328	30	1.9	30	85	7	80	42	15	7	35	1.75
10184336--10184498	79	2.0	80	85	1	220	34	18	12	33	1.89
10185658--10185737	17	5.0	16	75	15	85	7	12	0	80	0.91
10185695--10185736	6	6.8	6	79	15	50	4	14	0	80	0.86
10185655--10185744	29	3.0	30	79	11	87	6	14	0	78	0.93
10185677--10185736	31	2.0	31	87	9	88	6	13	0	80	0.91
10185659--10185744	36	2.3	39	77	13	83	5	13	0	80	0.89
10185675--10185744	29	2.4	28	84	11	88	5	14	0	80	0.89
10188468--10188515	24	2.0	24	83	0	60	45	6	14	33	1.70
10189609--10189655	19	2.4	20	85	7	69	44	6	10	38	1.65
10189630--10189824	62	3.2	60	78	4	219	36	9	4	49	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10189877--10189902	3	8.7	3	100	0	52	69	0	0	30	0.89
10190776--10190864	25	3.6	24	80	16	94	75	1	3	20	1.01
10190772--10190864	37	2.5	36	80	17	111	74	2	3	20	1.07
10190769--10190859	4	22.5	4	75	20	75	73	2	2	21	1.05
10190776--10190872	8	13.1	7	73	17	56	75	2	3	19	1.04
10192851--10192911	19	3.2	19	67	19	54	9	0	65	24	1.23
10193117--10193154	20	2.0	20	89	5	60	34	0	5	60	1.19
10193379--10193427	25	1.9	26	91	4	82	46	2	10	40	1.49
10196809--10196847	6	6.5	6	90	0	60	23	0	46	30	1.53
10197195--10197250	21	2.9	18	80	14	76	28	39	3	28	1.73
10197199--10197241	21	2.0	21	95	0	77	25	44	2	27	1.66
10209910--10210038	7	19.7	7	67	15	53	19	1	37	41	1.61
10209975--10210038	13	4.9	14	75	12	55	21	0	35	42	1.54
10210027--10210077	20	2.6	19	84	6	66	9	3	43	43	1.56
10211561--10211933	190	2.0	191	88	0	559	22	11	15	49	1.77
10215448--10215540	42	2.2	41	86	1	132	48	18	8	24	1.76
10215599--10215647	19	2.6	19	78	12	64	53	16	6	24	1.66
10215929--10215974	21	2.1	22	84	11	60	32	6	8	52	1.58
10216990--10217029	20	1.9	20	85	10	53	57	2	0	40	1.12
10218755--10218805	25	2.0	25	96	0	93	49	13	17	19	1.80
10219345--10219741	41	9.6	41	80	6	383	45	16	14	22	1.84
10219275--10219736	81	5.6	81	80	5	451	46	17	13	22	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10219327--10219736	122	3.3	122	84	5	493	46	16	14	22	1.83
10219959--10220044	21	4.1	21	73	4	57	38	18	9	33	1.83
10220007--10220045	20	2.0	20	84	0	51	33	17	12	35	1.88
10220027--10220132	43	2.4	43	81	4	115	33	16	13	37	1.87
10220144--10220199	24	2.4	24	96	3	105	35	16	8	39	1.80
10220829--10220857	12	2.5	12	94	5	51	37	34	0	27	1.57
10221406--10221454	9	5.3	10	78	11	52	8	8	0	83	0.81
10221812--10221856	9	4.8	9	81	10	54	0	15	2	82	0.77
10221818--10221854	11	3.4	11	85	14	58	0	13	2	83	0.74
10221812--10221854	22	2.1	20	87	12	61	0	13	2	83	0.74
10221818--10221862	22	2.0	22	87	8	65	2	15	2	80	0.92
10234945--10234986	21	2.0	22	90	4	68	33	2	0	64	1.07
10234954--10234993	21	1.9	21	89	0	62	37	2	0	60	1.11
10235178--10235297	57	2.1	57	93	1	206	40	20	8	31	1.82
10240515--10241275	381	2.0	381	98	0	1486	25	24	12	36	1.91
10242358--10242383	7	3.7	7	100	0	52	84	0	0	15	0.62
10246206--10246237	9	3.7	9	95	4	57	81	0	18	0	0.70
10246204--10246247	9	4.9	9	85	0	52	84	0	13	2	0.73
10247379--10247431	22	2.5	22	87	3	72	41	7	16	33	1.77
10247530--10247584	24	2.3	24	96	0	101	40	7	16	36	1.76
10247574--10247615	20	2.1	20	86	0	57	30	11	23	33	1.91
10247682--10247722	20	2.0	20	85	0	55	39	17	14	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10247989--10248444	41	11.0	41	82	4	472	21	16	17	44	1.87
10247994--10248444	122	3.6	123	84	4	530	21	16	17	44	1.86
10247989--10248444	163	2.8	164	82	7	530	21	16	17	44	1.87
10252146--10252195	19	2.6	19	87	0	73	18	6	22	54	1.65
10252130--10252204	19	3.9	19	77	8	71	22	5	17	54	1.63
10252260--10252346	42	2.1	41	91	2	138	27	9	16	47	1.76
10255821--10256204	185	2.0	189	86	3	533	48	13	13	24	1.79
10257691--10257741	20	2.6	20	87	3	68	45	41	3	9	1.56
10257730--10257859	7	19.7	7	67	12	69	40	37	2	20	1.65
10257731--10257859	19	6.6	18	71	16	64	39	37	2	20	1.65
10259507--10259571	32	2.0	32	90	0	103	40	7	12	40	1.71
10264736--10264773	20	2.0	20	85	15	53	55	0	0	44	0.99
10264868--10264988	55	2.2	54	84	8	147	47	8	14	29	1.74
10266773--10266836	29	2.3	28	89	5	94	25	1	9	64	1.33
10267501--10268021	265	2.0	265	91	0	844	36	13	15	34	1.86
10272958--10273017	32	1.9	31	86	3	84	45	1	1	51	1.21
10281325--10281417	24	3.9	23	71	21	59	34	0	4	61	1.16
10282416--10282469	20	2.8	20	88	2	83	46	7	5	40	1.55
10285071--10285120	23	2.1	24	82	10	59	72	6	8	14	1.27
10285126--10285165	5	7.6	5	89	10	62	77	5	0	17	0.94
10285567--10285749	41	4.5	41	85	1	206	42	16	16	24	1.88
10285468--10285746	81	3.3	80	75	11	215	43	16	14	25	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10301383--10301413	2	15.5	2	100	0	62	48	0	0	51	1.00
10306624--10306692	32	2.2	32	94	5	122	39	5	24	30	1.79
10307459--10307487	3	10.0	3	92	7	51	31	0	0	68	0.89
10307616--10307775	77	2.1	77	80	11	193	46	5	6	40	1.54
10307567--10307710	59	2.4	58	88	7	211	50	2	6	40	1.42
10310848--10310894	15	3.2	15	81	3	51	21	23	6	48	1.72
10318886--10318931	21	2.2	20	88	3	65	26	23	15	34	1.94
10319185--10319312	46	2.8	46	82	0	157	25	11	21	41	1.87
10320496--10320573	4	19.8	4	79	10	56	29	2	2	65	1.19
10320601--10320745	58	2.6	55	81	11	170	48	4	8	38	1.52
10320678--10320821	73	1.9	76	88	7	222	50	4	7	37	1.53
10320633--10320880	131	1.9	136	86	6	364	49	5	8	36	1.57
10320758--10320883	60	2.1	61	91	2	202	53	6	7	31	1.55
10321559--10321601	21	2.0	21	86	8	61	60	0	0	39	0.97
10321796--10321874	36	2.2	36	81	4	88	40	2	3	53	1.33
10322194--10322244	27	2.0	27	92	7	88	49	0	3	47	1.20
10322667--10322718	27	1.9	27	84	7	70	38	1	11	48	1.51
10323841--10324311	73	6.5	73	73	10	335	47	5	9	37	1.60
10323837--10324152	145	2.2	146	81	6	383	50	5	8	36	1.55
10324582--10324643	31	2.0	31	90	0	97	37	3	14	45	1.61
10329524--10329558	18	1.9	18	100	0	70	45	22	8	22	1.79
10331692--10331729	20	2.0	20	94	5	69	13	2	5	78	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10333129--10333232	20	5.3	20	75	11	81	17	3	35	43	1.67
10333160--10333232	7	11.2	6	77	11	56	19	1	34	45	1.59
10333321--10333357	7	5.3	7	90	0	56	18	0	35	45	1.50
10334980--10335047	30	2.3	30	85	10	86	27	10	14	47	1.77
10334990--10335048	30	2.0	30	90	6	93	28	11	13	45	1.79
10335414--10335780	40	9.2	39	76	5	256	32	16	18	31	1.93
10335455--10335780	120	2.7	120	93	2	532	32	16	19	31	1.94
10335414--10335780	120	3.1	118	89	4	481	32	16	18	31	1.93
10338035--10338080	18	2.6	17	80	6	56	6	15	2	76	1.09
10338547--10338602	27	2.1	27	80	12	62	10	10	0	78	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74