genome.fa.s212.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  72  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13973438--13973503	17	3.9	17	80	4	71	36	15	10	37	1.82
13973471--13973579	52	2.1	52	84	0	137	36	14	10	38	1.80
13973530--13973575	17	2.7	17	86	0	65	39	19	8	32	1.82
13973492--13973558	35	1.9	35	81	0	80	40	13	5	40	1.69
13974831--13975132	3	101.7	3	76	1	223	32	10	1	55	1.45
13975269--13975305	3	12.3	3	94	0	65	32	0	2	64	1.07
13977735--13977897	49	3.3	49	79	4	168	35	18	13	32	1.90
13978855--13978910	19	2.9	19	76	10	60	5	8	5	80	1.02
13978871--13978910	10	4.2	9	84	12	53	2	10	2	85	0.80
13994895--13994924	16	1.9	15	93	6	51	50	10	6	33	1.62
13997279--13997336	24	2.4	24	80	5	64	43	0	1	55	1.10
14000725--14000755	2	15.5	2	100	0	62	48	0	0	51	1.00
14001271--14001300	13	2.2	14	94	5	53	0	16	0	83	0.65
14001374--14001472	19	5.3	18	68	20	60	30	0	4	65	1.11
14001370--14001472	3	34.3	3	72	19	58	30	0	3	66	1.10
14001376--14001469	14	6.4	14	70	22	52	30	0	4	64	1.12
14001914--14001984	31	2.3	32	80	7	83	26	22	23	26	2.00
14001933--14002095	80	2.0	80	96	0	299	26	24	22	26	2.00
14002125--14002162	20	1.9	20	88	0	58	31	23	18	26	1.97
14002466--14002519	16	3.6	15	85	7	65	7	0	7	85	0.75
14002468--14002528	27	2.3	27	85	2	79	11	0	8	80	0.91
14002486--14002519	8	4.4	8	96	3	61	11	0	8	79	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14002601--14002689	27	3.2	27	62	20	65	41	6	14	37	1.72
14002592--14002999	59	6.7	60	86	10	523	46	7	12	33	1.71
14006874--14006911	8	4.9	8	90	3	60	76	0	13	10	1.02
14008088--14008415	40	8.1	40	91	5	511	22	17	20	39	1.92
14008088--14008434	81	4.3	81	89	6	528	22	18	20	38	1.93
14008663--14008692	13	2.2	14	94	5	53	0	16	0	83	0.65
14008792--14008862	25	3.0	24	82	13	69	35	0	4	60	1.16
14008828--14008861	3	11.0	3	87	6	50	32	0	0	67	0.91
14008820--14008869	22	2.3	22	80	16	59	36	0	2	62	1.07
14008811--14008869	13	4.7	13	79	12	61	35	0	3	61	1.13
14009306--14009370	31	2.1	31	82	5	78	32	21	16	29	1.96
14009306--14009487	80	2.3	80	92	0	292	28	26	20	24	1.99
14009332--14009518	80	2.3	79	86	3	241	27	29	20	22	1.99
14009510--14009552	20	2.2	19	87	4	59	32	20	16	30	1.95
14009927--14010330	59	6.7	59	85	11	495	45	7	13	33	1.70
14014368--14014480	59	1.9	59	88	0	172	35	18	7	38	1.78
14017087--14017126	19	2.1	19	85	4	53	57	12	7	22	1.60
14021254--14021296	20	2.2	20	83	8	52	13	4	2	79	1.00
14022698--14022748	26	2.0	25	84	3	66	41	15	9	33	1.80
14023398--14023426	3	9.7	3	100	0	58	68	0	0	31	0.89
14023852--14023952	30	3.4	29	76	10	98	43	0	13	42	1.44
14036409--14036454	17	2.6	17	82	3	56	10	8	0	80	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14040866--14040904	19	2.1	19	90	4	62	61	0	2	35	1.10
14046683--14046994	156	2.0	155	96	0	570	34	11	11	41	1.78
14047397--14047425	13	2.1	14	93	6	51	13	6	13	65	1.45
14049689--14049723	16	2.2	16	89	0	52	28	14	11	45	1.79
14051208--14051240	17	1.9	17	93	0	57	24	9	12	54	1.66
14055805--14055857	24	2.2	24	100	0	106	32	11	13	43	1.79
14057485--14057525	12	3.5	12	83	16	59	43	2	0	53	1.13
14057485--14057532	19	2.3	21	86	13	64	45	2	0	52	1.12
14057519--14057644	57	2.1	59	81	13	145	48	0	3	46	1.26
14057557--14057734	10	17.1	10	65	25	61	50	1	2	46	1.24
14059846--14059888	12	3.6	12	80	0	59	37	48	11	2	1.52
14067195--14067226	13	2.5	13	94	0	55	0	18	0	81	0.70
14067191--14067226	17	2.1	18	94	5	65	0	19	0	80	0.71
14072556--14072601	19	2.4	19	81	0	56	45	2	2	50	1.26
14072589--14072631	21	2.2	19	83	8	50	32	4	0	62	1.15
14073258--14073321	29	2.2	28	76	13	67	56	4	0	39	1.20
14074528--14074580	26	2.0	26	92	0	88	41	11	13	33	1.80
14081710--14081755	21	2.2	21	88	7	67	58	0	2	39	1.10
14081818--14081881	15	3.8	17	67	22	53	64	0	1	34	1.03
14082018--14082492	219	2.2	218	80	5	510	52	7	8	31	1.59
14082174--14082579	219	1.9	215	80	10	477	53	6	7	31	1.56
14082037--14083992	932	2.1	929	81	5	2249	52	6	9	32	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14082990--14083057	21	3.2	23	78	14	74	52	5	4	36	1.46
14083216--14083277	21	3.0	21	75	11	65	58	0	4	37	1.20
14083032--14083794	215	3.5	214	75	10	687	52	5	9	32	1.56
14084646--14084707	32	2.0	32	93	3	108	25	14	6	53	1.65
14086610--14086668	31	1.9	31	86	6	84	32	1	1	64	1.13
14088349--14088398	4	12.5	4	79	8	57	26	2	2	70	1.09
14089624--14089677	3	18.0	3	92	0	90	62	0	3	33	1.12
14093771--14093849	3	26.3	3	100	0	158	67	0	0	32	0.91
14100506--14100803	58	5.1	58	87	6	406	36	10	6	46	1.64
14101416--14101458	12	3.6	12	82	17	54	51	11	2	34	1.51
14101746--14101770	9	2.8	9	100	0	50	12	0	0	88	0.53
14102131--14102183	16	3.3	16	76	10	63	41	16	16	24	1.89
14102496--14102546	21	2.5	22	87	9	72	35	11	11	41	1.78
14102517--14102669	59	2.6	59	85	1	200	34	14	10	40	1.80
14102633--14102714	21	4.0	21	82	3	103	37	9	9	42	1.71
14102658--14102730	20	3.6	20	79	3	92	36	10	10	41	1.76
14102637--14102725	41	2.2	41	93	0	151	37	8	11	42	1.72
14102678--14102862	79	2.4	79	88	0	273	35	12	10	41	1.78
14102835--14102958	21	5.9	21	72	11	101	38	16	10	33	1.83
14102898--14102953	20	2.8	20	88	2	76	35	19	8	35	1.83
14102964--14102997	15	2.3	15	90	5	52	41	5	5	47	1.52
14104131--14104182	25	2.1	25	85	7	70	9	7	0	82	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14104137--14104185	8	5.9	8	85	7	62	10	6	0	83	0.80
14107987--14108136	58	2.6	58	85	6	214	40	10	2	46	1.53
14107948--14108136	57	3.2	57	82	9	227	39	9	3	47	1.54
14108689--14108731	19	2.2	20	87	4	61	53	18	4	23	1.63
14112613--14112707	46	2.1	46	100	0	190	34	10	12	42	1.77
14112708--14112747	21	1.9	21	89	0	62	45	2	5	47	1.38
14115548--14115621	33	2.2	33	80	0	85	37	21	16	24	1.93
14123832--14123993	86	1.9	83	83	6	209	38	4	16	40	1.68
14125604--14125806	95	2.1	95	91	0	325	52	11	7	28	1.66
14127800--14128130	145	2.3	145	80	4	366	41	13	12	32	1.82
14127861--14128196	144	2.3	144	81	6	369	42	14	12	30	1.83
14128444--14128488	20	2.2	20	84	7	56	33	8	6	51	1.59
14129453--14129515	32	2.0	32	84	6	83	50	3	0	46	1.17
14130121--14130177	25	2.2	25	81	3	69	38	3	15	42	1.65
14130603--14130654	21	2.4	21	96	3	95	50	0	0	50	1.00
14131888--14131918	16	1.9	16	93	0	53	0	0	9	90	0.46
14132651--14132679	13	2.1	14	93	6	51	48	6	0	44	1.29
14134476--14134517	12	3.8	12	87	9	54	14	0	11	73	1.09
14135112--14135155	20	2.3	18	81	11	52	34	4	9	52	1.54
14135161--14135247	21	4.1	21	75	8	70	29	2	12	55	1.50
14135195--14135331	24	5.9	24	73	14	117	32	3	8	55	1.47
14135275--14135326	20	2.6	20	84	6	70	32	5	5	55	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14135302--14135362	32	1.9	31	90	3	95	31	1	11	55	1.45
14135394--14135455	24	2.6	24	85	7	81	33	3	9	53	1.50
14135387--14135425	19	2.1	19	85	0	51	30	5	10	53	1.56
14135552--14135668	20	5.9	19	70	25	66	35	5	9	49	1.57
14142838--14143014	43	4.1	43	82	5	214	28	11	20	39	1.88
14144043--14144151	24	4.6	24	73	13	82	32	4	11	52	1.57
14144125--14144171	20	2.3	20	75	13	51	34	2	6	57	1.36
14144144--14144261	55	2.1	55	84	3	148	28	5	11	53	1.61
14144505--14144562	24	2.4	25	94	2	100	32	5	13	48	1.65
14144546--14144602	20	3.1	17	74	20	53	36	5	7	50	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74