genome.fa.s212.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  2  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84506--84601	8	11.6	8	71	17	63	15	4	1	79	0.94
84501--84601	44	2.2	47	83	11	122	15	3	0	79	0.94
85659--85718	26	2.2	28	85	14	90	15	3	3	78	1.01
85658--85711	17	2.8	20	81	10	60	14	3	1	79	0.95
85696--85729	17	1.9	18	94	5	61	17	2	2	76	1.04
85744--85967	60	3.7	60	82	6	267	46	7	13	32	1.72
86441--91158	180	26.1	180	72	11	2532	41	10	8	40	1.69
86443--92681	360	17.3	360	72	10	3212	41	10	8	40	1.69
90427--90475	17	2.8	18	72	15	57	34	8	12	44	1.71
86434--92461	541	11.2	525	72	12	1970	41	10	8	40	1.69
91150--92681	356	4.3	356	76	5	1281	41	10	8	40	1.69
91150--92681	181	8.6	179	76	6	1162	41	10	8	40	1.69
91212--92634	537	2.7	534	79	6	1362	41	10	8	39	1.69
92570--92794	113	2.0	113	81	3	265	39	11	7	41	1.69
92683--94899	181	12.3	182	74	8	1518	41	9	8	40	1.68
92770--94994	548	4.1	531	76	9	1571	42	9	8	40	1.67
94299--94331	18	1.9	17	88	11	50	39	6	6	48	1.53
94038--95032	180	5.6	174	75	7	684	41	9	8	40	1.68
94262--95032	360	2.2	356	78	7	774	40	10	8	40	1.70
96699--99683	181	16.5	180	76	7	2170	41	9	8	40	1.69
101147--101194	24	2.0	24	100	0	96	41	20	0	37	1.53
101295--101328	15	2.3	15	89	0	50	47	35	11	5	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102079--103431	372	3.7	370	85	3	1765	19	30	22	27	1.98
109681--109723	17	2.5	17	96	0	77	58	6	13	20	1.59
110909--110966	29	2.0	29	93	0	98	39	15	1	43	1.57
118932--118984	27	2.0	27	88	0	79	30	13	13	43	1.82
121831--122086	129	2.0	129	93	0	440	21	21	14	42	1.87
128467--128521	22	2.7	20	78	13	58	34	1	0	63	1.05
128944--128989	23	2.0	22	87	4	65	34	0	8	56	1.30
129139--129277	63	2.2	61	79	13	149	45	7	4	43	1.51
129644--129692	24	2.0	24	92	0	80	30	24	2	42	1.66
130867--130904	15	2.4	16	82	8	51	34	2	0	63	1.09
142632--142719	44	2.0	44	93	0	149	31	27	1	39	1.64
148523--148548	3	8.7	3	100	0	52	30	0	34	34	1.58
149439--149714	64	4.4	62	73	16	192	44	7	6	41	1.59
149544--149695	63	2.4	64	82	8	179	42	8	7	41	1.63
149846--150210	189	1.9	189	87	2	536	41	7	7	43	1.61
151699--151740	17	2.4	18	84	11	61	47	2	0	50	1.14
157237--157289	7	7.9	7	82	16	67	84	0	3	11	0.73
157237--157273	19	2.0	18	94	5	65	86	0	0	13	0.57
157304--157358	3	18.0	3	92	3	92	32	0	1	65	1.03
168938--168965	2	14.0	2	100	0	56	50	0	0	50	1.00
170712--170757	3	15.3	3	82	13	51	36	0	0	63	0.95
170719--170761	17	2.6	17	82	14	54	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
170747--170806	22	2.8	20	82	12	59	48	0	3	48	1.18
171067--171197	22	5.9	21	79	7	91	38	3	5	51	1.43
171082--171197	11	10.5	11	70	4	63	38	4	5	51	1.44
171095--171391	44	6.5	44	72	9	202	40	6	4	48	1.48
171111--171279	22	7.6	22	72	9	101	41	4	5	48	1.47
171257--171306	15	3.3	15	73	15	50	44	6	0	50	1.26
171287--171391	22	4.8	22	77	9	97	40	9	2	47	1.51
171355--171408	22	2.5	22	87	0	72	38	7	1	51	1.41
171529--171569	22	1.9	22	95	5	75	36	4	4	53	1.44
171722--171823	22	4.7	22	78	6	93	40	5	0	52	1.32
171710--171822	43	2.6	44	77	2	122	41	6	0	51	1.33
174912--174938	2	13.5	2	100	0	54	51	0	0	48	1.00
176914--176943	2	15.0	2	100	0	60	50	0	0	50	1.00
179250--179284	2	17.5	2	100	0	70	51	0	0	48	1.00
179689--179727	2	19.5	2	94	0	69	53	0	0	46	1.00
193368--193443	38	2.0	38	97	0	143	46	21	7	25	1.78
196603--196805	103	2.0	103	90	0	316	40	8	17	33	1.79
197473--197535	14	4.3	14	76	11	54	7	3	6	82	0.93
209546--209607	2	31.0	2	90	0	97	45	0	0	54	0.99
214809--214836	2	14.0	2	100	0	56	50	0	50	0	1.00
215080--215118	2	19.5	2	100	0	78	0	48	0	51	1.00
221254--221281	3	9.3	3	100	0	56	0	32	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
230756--230786	2	15.5	2	100	0	62	48	0	0	51	1.00
230829--230965	72	1.9	72	93	0	238	54	7	6	31	1.53
231184--231210	6	4.5	6	100	0	54	14	14	37	33	1.88
251963--251995	2	16.5	2	100	0	66	48	0	0	51	1.00
252920--252982	30	2.1	30	96	0	117	38	7	12	41	1.73
257141--257173	15	2.1	17	88	11	52	87	0	12	0	0.53
267306--267342	3	12.3	3	94	0	65	29	2	0	67	1.04
268219--268246	2	14.0	2	100	0	56	50	0	0	50	1.00
270782--270875	46	2.0	46	85	0	125	39	19	19	22	1.93
271119--271453	168	2.0	168	95	1	600	40	11	15	32	1.84
271505--271742	117	2.0	116	82	5	284	44	10	12	31	1.76
271717--271752	19	1.9	19	94	5	65	38	22	11	27	1.88
272890--272925	16	2.3	15	90	4	54	66	0	33	0	0.92
273424--273454	3	10.3	3	92	0	53	67	0	32	0	0.91
274212--274434	112	2.0	112	93	0	383	24	17	17	41	1.90
276852--276895	3	14.7	3	100	0	88	31	0	0	68	0.90
278869--278916	25	1.9	25	87	8	71	50	2	6	41	1.39
279366--279495	58	2.3	58	80	7	140	57	6	8	27	1.52
281362--281390	15	1.9	15	100	0	58	62	0	3	34	1.12
282727--282847	30	4.0	30	84	0	143	48	21	22	7	1.74
282727--282847	60	2.0	60	86	0	170	48	21	22	7	1.74
282735--282867	30	4.4	30	82	0	95	49	21	22	6	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
282727--282867	60	2.3	60	84	2	149	49	21	21	6	1.72
286311--286438	30	4.3	30	86	0	166	48	21	23	7	1.74
286295--286438	60	2.4	60	88	1	209	47	22	22	6	1.75
287437--287589	80	1.9	80	94	0	270	31	18	20	28	1.97
288986--289085	42	2.4	42	91	0	155	33	52	8	7	1.58
289161--289199	3	13.0	3	100	0	78	33	66	0	0	0.92
289070--289285	114	1.9	114	94	0	378	19	32	23	24	1.97
290668--290693	2	13.0	2	100	0	52	50	0	0	50	1.00
291371--291407	5	7.8	5	96	3	60	35	0	0	64	0.94
295036--295064	2	14.5	2	100	0	58	48	0	0	51	1.00
296527--296643	58	2.0	58	86	0	162	26	23	28	22	1.99
296661--296695	6	5.8	6	90	10	54	20	0	0	80	0.72
296663--296697	11	3.1	12	88	12	56	20	0	0	80	0.72
296706--296795	16	5.6	16	73	20	64	26	2	3	67	1.17
296752--296802	23	2.3	22	84	15	70	19	1	1	76	0.98
297368--297411	19	2.2	20	88	4	63	18	22	22	36	1.95
297734--297759	11	2.4	11	100	0	52	15	0	7	76	0.99
297925--298199	57	4.7	57	91	3	397	46	6	12	34	1.69
304140--304196	19	3.0	19	82	10	71	77	0	17	5	0.95
304169--304240	1	72.0	1	73	0	54	86	0	8	5	0.72
304171--304239	8	8.9	8	79	9	63	85	0	8	5	0.74
304170--304242	9	8.1	9	77	17	71	84	0	9	5	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
304171--304242	27	2.7	26	79	14	92	84	0	9	5	0.76
305426--305847	42	10.1	41	87	7	557	24	18	22	35	1.96
305426--305847	83	5.1	82	86	7	564	24	18	22	35	1.96
305854--305948	1	95.0	1	78	0	91	88	8	0	3	0.62
305854--305948	16	6.5	15	81	11	117	88	8	0	3	0.62
305857--305946	42	2.2	41	92	7	148	87	8	0	3	0.64
306032--306148	58	2.0	58	91	0	189	23	23	29	23	1.99
306168--306298	12	11.3	11	67	18	54	24	3	3	69	1.17
306168--306201	16	2.1	16	94	5	59	20	0	0	79	0.73
306167--306298	23	5.7	21	70	18	70	24	3	3	69	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74