genome.fa.s212.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  34  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7458490--7458523	15	2.4	14	85	9	50	17	0	0	82	0.67
7464861--7464890	2	15.5	2	93	6	53	50	0	0	50	1.00
7465041--7465073	15	2.1	16	88	5	50	39	3	0	57	1.14
7470109--7470145	19	1.9	19	88	0	56	51	2	5	40	1.39
7470109--7470151	19	2.2	19	83	4	50	48	4	4	41	1.44
7472499--7472548	22	2.3	22	82	0	64	26	26	16	32	1.96
7472586--7472771	32	5.7	31	76	12	153	28	14	18	38	1.90
7472554--7472761	65	3.2	64	79	7	224	29	14	17	38	1.90
7472554--7472829	32	8.4	33	73	7	143	28	15	18	37	1.91
7472650--7472880	100	2.3	98	82	3	259	28	14	18	38	1.91
7472732--7473024	34	8.8	35	68	16	133	31	15	17	36	1.90
7472900--7473187	97	2.9	97	78	9	230	32	13	17	36	1.89
7473044--7473225	32	5.5	33	76	11	160	32	13	18	36	1.89
7473066--7473220	66	2.3	66	78	7	163	34	12	16	35	1.87
7474452--7474530	41	1.9	42	94	2	142	21	15	11	51	1.74
7474549--7474610	25	2.6	23	74	20	63	3	14	3	79	0.99
7474584--7474618	9	3.8	9	85	7	52	2	11	0	85	0.69
7474539--7474618	27	2.7	31	77	14	80	5	15	2	77	1.04
7476047--7476082	10	3.5	10	92	3	54	0	13	2	83	0.76
7476396--7476538	70	2.0	70	100	0	286	34	23	8	33	1.85
7480098--7480409	155	2.0	155	92	0	516	40	18	11	29	1.87
7481611--7481644	14	2.2	16	90	10	54	52	8	0	38	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7481729--7481758	14	2.2	13	94	5	51	26	0	0	73	0.84
7481729--7481772	20	2.1	21	87	4	63	31	0	0	68	0.90
7482175--7482288	59	1.9	59	89	0	174	54	12	17	15	1.71
7483831--7483868	20	2.0	20	89	5	60	34	0	5	60	1.19
7484095--7484143	25	1.9	26	91	4	82	46	2	10	40	1.49
7487554--7487597	6	7.3	6	86	0	61	25	0	45	29	1.54
7487918--7487994	21	3.9	19	80	14	86	27	38	3	29	1.74
7487934--7487994	18	3.2	18	82	13	86	27	39	3	29	1.72
7489582--7489615	15	2.4	14	85	9	50	17	0	0	82	0.67
7494666--7494690	2	12.5	2	100	0	50	52	0	0	48	1.00
7495797--7495872	37	2.1	37	84	0	98	27	17	15	39	1.90
7495957--7495987	2	15.5	2	100	0	62	48	0	0	51	1.00
7496137--7496169	15	2.1	16	88	5	50	39	3	0	57	1.14
7496238--7496294	27	2.1	27	100	0	114	45	3	7	43	1.48
7497505--7497646	70	2.0	70	97	1	268	40	7	10	41	1.67
7498176--7498287	29	3.7	30	72	13	81	50	3	8	36	1.51
7498711--7498755	15	3.0	14	81	12	54	28	0	0	71	0.87
7498737--7498778	11	3.7	12	84	9	61	33	2	0	64	1.07
7498741--7498783	23	1.9	22	90	4	68	39	2	0	58	1.11
7499654--7499767	34	3.4	32	79	9	102	46	11	6	35	1.65
7502900--7502951	19	2.7	19	87	0	77	53	7	9	28	1.61
7505711--7505749	20	2.0	20	85	10	53	41	7	12	38	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7505849--7505883	18	2.0	18	94	5	63	42	22	5	28	1.76
7506175--7506199	4	6.2	4	100	0	50	76	0	0	24	0.80
7508063--7508101	2	19.5	2	84	10	53	46	0	5	48	1.24
7508071--7508113	20	2.2	20	91	0	68	39	2	11	46	1.53
7512555--7512588	2	18.0	2	88	11	54	52	0	0	47	1.00
7513271--7513322	26	2.0	26	84	0	68	38	3	11	46	1.59
7513924--7513977	29	1.9	26	96	4	72	46	0	22	31	1.52
7515094--7515144	18	2.8	18	75	3	57	64	0	1	33	1.05
7515272--7515309	18	2.1	19	90	5	60	65	2	0	31	1.06
7515268--7515311	18	2.5	17	82	13	54	70	2	0	27	0.99
7515283--7515357	9	8.0	9	73	15	55	54	6	2	36	1.41
7515330--7515392	18	3.3	19	79	16	60	57	4	3	34	1.36
7515404--7515458	19	2.8	20	78	5	60	67	5	0	27	1.12
7515406--7515465	9	6.6	9	70	11	50	71	5	0	23	1.05
7515468--7515514	18	2.8	16	81	12	58	36	0	4	59	1.17
7518034--7518061	12	2.3	12	100	0	56	71	0	0	28	0.86
7518033--7518072	12	3.6	12	77	19	50	65	0	5	30	1.14
7518336--7518374	7	5.4	7	96	3	69	71	0	0	28	0.86
7518494--7518582	38	2.4	37	77	9	99	65	5	2	26	1.27
7518897--7518958	19	3.3	18	77	8	61	30	1	6	61	1.31
7518899--7518938	18	2.2	18	86	0	53	30	2	5	62	1.29
7518971--7519024	24	2.2	24	84	12	67	31	5	1	61	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7519069--7519125	22	2.6	22	80	5	62	19	5	7	68	1.33
7519156--7519236	9	8.4	9	71	10	54	33	2	7	56	1.40
7519156--7519237	10	8.4	10	72	5	60	32	2	7	57	1.39
7519156--7519237	20	4.2	19	75	9	67	32	2	7	57	1.39
7519328--7519366	11	3.5	11	82	6	51	51	5	2	41	1.38
7524692--7524748	12	4.8	12	82	0	69	38	28	7	26	1.82
7524692--7524756	12	5.4	12	76	10	62	38	26	9	26	1.86
7524692--7524746	24	2.3	24	90	0	83	38	29	7	25	1.83
7525446--7525951	187	2.7	186	76	8	483	39	10	12	37	1.78
7525820--7526023	61	3.3	59	70	10	144	40	9	13	36	1.77
7525820--7526079	123	2.1	124	83	4	330	41	10	12	35	1.76
7525633--7526255	309	2.0	310	82	5	744	40	9	12	36	1.76
7525958--7526473	179	2.8	178	79	8	531	40	11	12	36	1.78
7535372--7535397	11	2.4	11	100	0	52	30	7	15	46	1.74
7537795--7537974	87	2.1	87	98	0	351	32	14	13	38	1.86
7542313--7542359	23	2.1	22	84	11	60	51	0	0	48	1.00
7544083--7544195	37	3.1	37	89	0	181	32	6	11	49	1.64
7547111--7547200	44	2.0	44	93	0	153	32	13	16	37	1.88
7550332--7550407	21	3.7	20	70	20	66	32	11	19	35	1.88
7550349--7550415	21	3.2	21	77	8	82	35	10	20	32	1.87
7551393--7551428	17	2.1	17	100	0	72	19	16	11	52	1.73
7563289--7563398	58	1.9	56	82	10	134	44	2	2	50	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7563364--7563470	35	3.0	35	76	10	108	44	4	5	44	1.48
7564884--7564915	2	16.0	2	100	0	64	50	0	50	0	1.00
7565685--7565769	42	2.0	42	95	0	152	43	8	20	28	1.80
7566217--7566244	2	14.0	2	100	0	56	50	0	0	50	1.00
7567532--7567597	21	3.0	21	82	8	71	45	0	0	54	0.99
7568653--7568689	18	2.1	18	100	0	74	43	5	5	45	1.49
7570154--7570205	21	2.5	21	74	0	50	46	0	1	51	1.12
7570340--7570409	27	2.5	28	88	6	106	47	0	0	52	1.00
7570420--7570471	17	3.0	17	76	20	54	44	0	0	55	0.99
7570428--7570529	23	4.4	24	73	17	74	47	0	0	50	1.14
7570424--7570510	4	21.8	4	69	17	56	45	0	1	52	1.08
7570867--7570895	15	1.9	15	100	0	58	58	27	0	13	1.36
7571305--7571356	27	1.9	27	96	0	95	40	17	9	32	1.82
7575776--7576705	324	2.9	317	80	8	964	42	14	10	33	1.79
7575776--7576801	161	6.4	161	78	6	874	42	14	10	32	1.80
7580087--7580129	21	2.0	21	86	0	59	41	20	9	27	1.83
7582821--7583165	190	1.8	192	82	3	455	36	12	11	39	1.79
7582758--7583207	190	2.4	191	77	9	454	36	12	10	41	1.76
7584078--7584172	25	3.8	25	70	5	75	26	6	23	44	1.77
7585223--7585319	47	2.1	47	82	5	117	38	6	2	53	1.38
7585828--7585867	10	3.9	10	80	6	53	70	7	2	20	1.24
7585828--7585873	21	2.1	22	92	4	76	69	6	4	19	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7586299--7586366	3	22.7	3	93	0	118	64	0	2	32	1.08
7586423--7586482	26	2.4	25	91	2	93	35	21	26	16	1.95
7586637--7586861	119	1.9	118	82	4	283	45	14	22	17	1.85
7586777--7586985	104	2.0	104	85	3	287	46	15	21	16	1.84
7587943--7587986	23	1.9	23	85	0	61	4	11	4	79	1.02
7593929--7594471	161	3.4	160	81	5	596	41	14	10	32	1.80
7598395--7598437	21	2.0	21	86	0	59	41	20	9	27	1.83
7601084--7601408	62	5.2	62	73	11	205	36	13	9	40	1.77
7601084--7601560	190	2.5	186	80	6	546	36	12	9	40	1.76
7602383--7602475	25	3.7	25	70	5	71	26	7	21	44	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74