genome.fa.s212.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  49  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9977169--9977289	12	10.0	12	68	18	63	50	33	1	14	1.52
9977171--9977289	19	6.2	19	64	24	52	51	32	1	14	1.52
9980591--9980637	11	4.2	11	76	12	51	42	0	2	55	1.12
9980589--9980632	13	3.5	13	81	12	56	43	0	2	54	1.12
9982595--9982624	16	1.9	16	93	6	53	53	6	13	26	1.64
9983601--9983629	14	2.0	15	93	6	51	34	0	0	65	0.93
9983835--9983867	15	2.3	14	94	5	57	30	12	0	57	1.35
9984783--9984812	4	7.5	4	100	0	60	23	0	0	76	0.78
9984808--9984835	3	9.3	3	100	0	56	32	0	0	67	0.91
9985507--9985560	27	1.9	28	85	7	74	59	5	3	31	1.38
9988902--9988946	15	3.2	15	81	9	51	66	22	0	11	1.22
9991343--9991377	14	2.5	14	86	13	54	71	8	8	11	1.31
9993346--9993676	164	2.0	164	99	0	653	41	10	10	37	1.74
10002611--10005048	930	2.6	925	83	3	2954	33	9	23	34	1.87
10004821--10004886	35	1.9	34	90	3	105	19	6	33	40	1.76
10007093--10007120	4	7.0	4	100	0	56	25	0	0	75	0.81
10010910--10010953	23	2.0	23	86	4	63	38	0	11	50	1.39
10020503--10020560	27	2.1	28	93	3	100	46	18	15	18	1.84
10020503--10020560	9	6.3	9	80	9	55	46	18	15	18	1.84
10020511--10020560	9	5.6	9	86	9	66	48	18	14	20	1.82
10021487--10021539	9	5.9	9	89	6	81	79	0	0	20	0.74
10021476--10021543	18	3.7	19	86	5	77	79	0	2	17	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10021475--10021543	28	2.5	28	83	6	88	78	0	2	18	0.88
10022578--10023923	73	18.6	73	82	6	1352	20	24	13	41	1.88
10022791--10022904	35	3.3	34	72	13	97	21	22	11	44	1.84
10022578--10023923	142	9.3	144	81	5	1329	20	24	13	41	1.88
10022592--10023923	215	6.1	215	81	6	1340	20	24	13	42	1.88
10023300--10023395	34	2.8	35	70	3	95	19	28	14	37	1.91
10022827--10023927	35	30.5	36	63	15	208	20	24	13	42	1.87
10023703--10023906	39	5.4	38	68	16	131	22	25	12	39	1.89
10024161--10024199	12	3.2	12	92	0	60	58	2	0	38	1.12
10024171--10024221	9	5.4	9	80	15	50	60	0	0	39	0.97
10024165--10024200	3	12.0	3	87	0	54	61	2	0	36	1.11
10024600--10024651	24	2.1	24	83	16	63	65	19	5	9	1.42
10030443--10030476	18	1.9	17	88	5	50	52	2	0	44	1.16
10031546--10031580	2	18.5	2	88	11	56	48	0	0	51	1.00
10033720--10033866	79	1.9	77	81	2	177	46	4	10	38	1.59
10034046--10034118	37	2.2	32	77	20	78	46	4	0	49	1.21
10035710--10035742	10	3.0	11	86	13	50	27	0	9	63	1.24
10036783--10036816	5	6.8	5	90	10	52	82	17	0	0	0.67
10036783--10036816	9	3.4	10	88	12	52	82	17	0	0	0.67
10036784--10036815	14	2.2	15	94	5	57	81	18	0	0	0.70
10040232--10040257	2	13.0	2	100	0	52	50	0	0	50	1.00
10040736--10041180	129	3.5	128	85	4	556	43	11	5	40	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10042080--10042124	22	2.0	22	83	8	56	11	6	8	73	1.25
10046511--10046633	64	1.9	67	83	8	164	53	8	13	23	1.68
10057821--10057875	25	2.2	25	96	0	101	45	10	7	36	1.67
10058263--10058300	15	2.5	15	87	8	51	21	0	2	76	0.91
10058308--10058365	26	2.3	27	79	11	68	63	0	1	34	1.04
10058309--10058377	3	22.0	3	79	8	75	63	0	1	34	1.03
10058349--10058410	9	6.9	9	88	0	52	53	1	11	33	1.46
10058614--10058673	29	2.1	29	84	12	79	21	6	3	68	1.28
10058660--10058718	21	2.8	20	80	12	57	16	10	0	72	1.10
10058654--10058764	33	3.5	31	73	13	91	17	11	0	71	1.15
10058635--10058721	38	2.3	38	80	4	95	18	8	1	72	1.15
10059696--10059976	109	2.6	109	84	7	349	54	8	5	30	1.54
10059700--10059976	55	5.1	53	84	6	322	54	9	5	31	1.54
10063938--10063977	19	2.2	18	86	4	53	47	17	10	25	1.78
10072780--10072811	16	1.9	17	93	6	57	75	6	6	12	1.19
10083327--10083385	27	2.2	27	90	0	91	16	6	38	37	1.76
10084282--10084312	15	2.1	15	93	0	53	29	6	32	32	1.83
10085646--10085684	20	2.0	19	85	5	51	25	15	15	43	1.86
10087154--10087219	34	2.0	33	87	3	96	66	6	1	25	1.23
10087193--10087227	13	2.7	13	90	0	52	80	2	2	14	0.95
10089367--10089407	16	2.5	17	76	11	50	51	2	0	46	1.14
10090271--10090326	25	2.2	26	90	3	87	41	5	5	48	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10090632--10090737	34	3.2	33	68	17	83	50	8	0	40	1.33
10090617--10090747	67	2.0	67	90	0	208	49	7	0	41	1.36
10091369--10091429	24	2.6	24	85	12	74	57	3	0	39	1.15
10091367--10091429	23	2.8	24	78	21	73	55	3	0	41	1.16
10091395--10091442	23	2.1	23	84	0	60	62	2	2	33	1.18
10093015--10093055	19	2.1	20	86	4	57	14	0	63	21	1.30
10093583--10093631	25	1.9	26	91	4	82	46	2	10	40	1.49
10096755--10096803	25	1.9	26	91	4	82	40	10	2	46	1.49
10097323--10097412	39	2.3	39	81	7	110	21	56	1	21	1.48
10097393--10097430	19	2.0	20	84	5	51	23	52	0	23	1.47
10101631--10101713	4	20.5	4	71	22	50	20	2	3	73	1.10
10101651--10101706	25	2.3	24	85	11	78	17	1	3	76	1.01
10101619--10101711	12	7.6	11	72	23	55	18	3	4	74	1.12
10101618--10101713	16	5.9	15	71	20	61	18	3	4	73	1.12
10101741--10101770	13	2.4	12	94	5	51	73	0	0	26	0.84
10102557--10102586	12	2.5	12	100	0	60	30	0	0	70	0.88
10102600--10102649	3	16.7	3	100	0	100	32	0	0	68	0.90
10102705--10102900	62	3.2	61	81	7	204	48	5	9	35	1.59
10102835--10102872	17	2.2	17	86	9	51	60	2	13	23	1.45
10102813--10102978	81	2.1	78	85	6	226	46	6	9	37	1.61
10102874--10102920	19	2.4	20	85	7	69	38	10	6	44	1.65
10102901--10103038	63	2.3	60	87	6	190	44	6	9	39	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10102824--10102986	77	2.1	80	83	6	208	47	5	9	38	1.59
10102939--10103031	30	3.0	30	63	14	71	44	5	11	38	1.64
10107998--10108160	79	2.1	79	84	3	211	35	12	17	34	1.87
10108271--10108324	21	2.4	23	84	6	67	40	12	14	31	1.84
10108289--10108339	23	2.2	23	85	0	66	37	13	15	33	1.87
10108521--10108827	89	3.5	89	92	0	465	25	13	20	40	1.90
10108643--10108781	45	3.1	45	63	10	122	29	15	18	36	1.91
10109132--10109169	20	1.9	19	89	5	58	15	2	5	76	1.08
10109116--10109182	25	2.8	24	74	17	75	19	1	4	74	1.07
10110031--10110092	3	20.7	3	83	6	81	27	3	1	67	1.15
10110156--10110457	58	5.0	59	76	10	292	48	5	9	36	1.59
10110155--10110457	121	2.5	119	81	9	366	48	5	9	36	1.59
10110156--10110457	60	5.0	59	77	7	254	48	5	9	36	1.59
10113365--10113399	15	2.3	15	90	0	52	14	17	2	65	1.38
10125921--10125978	10	5.8	10	85	0	62	44	18	12	24	1.84
10125913--10125980	10	6.9	10	77	14	52	45	17	11	25	1.82
10127963--10128115	50	3.1	49	81	5	173	34	12	9	43	1.74
10131545--10131697	77	2.0	77	98	0	297	34	16	6	42	1.74
10131862--10132229	182	2.0	183	94	0	639	37	22	9	29	1.86
10139289--10139360	30	2.5	27	82	10	81	44	0	1	54	1.08
10139421--10139462	21	2.0	21	86	9	59	47	7	2	42	1.43
10139443--10139505	29	2.2	29	82	0	72	46	6	1	46	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10142006--10142217	83	2.5	86	82	5	243	45	8	11	33	1.71
10142035--10142217	86	2.2	83	84	4	224	47	8	10	33	1.67
10143683--10143731	23	2.1	23	96	0	89	26	18	8	46	1.76
10150614--10150855	49	4.9	49	75	7	220	38	16	12	31	1.86
10150587--10150894	148	2.1	149	80	3	343	39	15	11	33	1.83
10162210--10162235	10	2.6	10	100	0	52	53	0	0	46	1.00
10172808--10172849	21	2.0	21	90	0	66	38	21	19	21	1.94
10179209--10179243	15	2.3	15	90	0	52	65	2	17	14	1.38
10182169--10182395	58	3.8	58	82	9	260	36	10	5	48	1.60
10182169--10182388	119	1.8	119	84	7	302	36	10	5	47	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74