genome.fa.s212.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  73  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14150775--14150931	59	2.8	57	80	7	158	31	9	5	52	1.57
14150919--14150972	20	2.8	19	86	8	74	48	0	7	44	1.31
14150961--14150998	19	2.0	20	85	15	53	31	2	2	63	1.22
14152001--14152139	42	3.4	42	74	17	141	29	15	17	37	1.91
14152051--14152128	37	2.1	38	87	2	113	30	16	19	33	1.94
14152007--14152176	80	2.1	80	83	6	211	30	14	18	37	1.90
14152001--14152171	43	4.1	42	71	15	133	28	14	18	38	1.90
14155845--14156005	58	2.9	59	79	14	164	36	8	5	50	1.55
14155845--14156005	59	2.9	58	79	14	178	36	8	5	50	1.55
14156019--14156150	56	2.4	56	75	12	128	36	8	4	50	1.53
14161237--14161456	61	3.7	59	84	5	284	35	11	6	45	1.66
14161496--14161555	15	3.9	15	76	8	66	80	1	5	13	0.96
14161504--14161544	21	1.9	22	95	5	75	78	2	4	14	1.03
14161949--14161988	20	2.0	20	90	0	62	17	15	25	42	1.88
14161983--14162008	11	2.4	11	100	0	52	26	19	26	26	1.99
14162444--14162521	32	2.4	32	80	12	88	67	5	5	21	1.30
14162557--14162587	3	10.7	3	93	6	55	67	0	0	32	0.91
14162561--14162618	17	3.2	17	76	23	57	63	3	0	32	1.11
14162557--14162592	12	3.1	11	92	8	54	66	0	0	33	0.92
14162560--14162606	14	3.3	14	83	16	53	63	2	0	34	1.06
14162667--14162710	9	4.7	10	86	13	51	65	6	0	27	1.17
14162892--14162952	1	61.0	1	76	0	59	0	0	11	88	0.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14162892--14162952	10	6.2	10	87	9	81	0	0	11	88	0.51
14162892--14162949	20	3.0	20	90	9	93	0	0	12	87	0.53
14162959--14163421	40	11.1	40	86	8	586	36	23	15	24	1.94
14162959--14163421	81	5.5	81	84	9	601	36	23	15	24	1.94
14162959--14163424	121	3.7	122	86	8	625	36	23	15	24	1.94
14163247--14163344	50	1.9	51	91	2	162	33	26	12	27	1.92
14162959--14163421	213	2.2	203	85	7	628	36	23	15	24	1.94
14163208--14163384	91	1.9	92	94	3	313	35	24	15	24	1.94
14164644--14164692	20	2.5	20	76	6	55	4	18	0	77	0.92
14168564--14168731	62	2.7	61	88	4	248	34	12	5	47	1.66
14168778--14168819	21	1.9	22	85	9	59	78	4	4	11	1.06
14169250--14169275	11	2.4	11	100	0	52	15	26	34	23	1.94
14169532--14169637	53	2.0	53	98	0	203	16	18	23	40	1.91
14169893--14169977	4	20.5	4	74	13	66	67	3	0	29	1.08
14169885--14169977	45	2.1	45	84	8	118	67	3	0	29	1.06
14169887--14170029	16	8.8	16	68	24	70	64	3	1	30	1.19
14171611--14171687	35	2.2	35	92	0	127	50	12	9	27	1.71
14172283--14172335	25	2.1	25	92	0	88	41	22	18	16	1.90
14175133--14175196	28	2.3	28	77	17	71	20	3	26	50	1.63
14175125--14175258	47	2.8	48	76	14	125	20	4	26	48	1.68
14175131--14175291	48	3.4	46	74	11	130	21	3	26	49	1.66
14175677--14175758	29	2.8	29	81	10	94	40	1	2	56	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14175677--14175756	30	2.6	31	82	9	94	40	1	2	56	1.21
14175780--14175869	30	3.0	29	82	7	108	43	2	13	41	1.56
14178543--14178571	14	2.1	14	100	0	58	48	6	6	37	1.57
14178619--14178661	22	2.0	22	100	0	86	39	18	18	23	1.92
14182512--14182536	11	2.3	11	100	0	50	48	12	0	40	1.40
14185575--14185607	17	1.9	17	93	0	57	21	15	21	42	1.89
14187529--14187555	12	2.2	12	100	0	54	18	14	7	59	1.58
14188822--14189172	186	1.9	185	92	2	598	51	10	7	30	1.63
14192832--14192862	6	5.3	6	92	7	55	83	0	0	16	0.64
14193910--14193938	3	9.7	3	100	0	58	65	0	0	34	0.93
14195539--14195642	51	2.0	52	86	1	147	38	10	25	25	1.88
14198183--14198217	17	2.1	17	89	10	54	14	2	5	77	1.07
14198626--14198695	33	2.2	32	84	7	88	48	12	10	28	1.74
14198820--14198867	10	5.0	10	85	7	55	60	33	0	6	1.22
14198826--14198867	10	4.3	10	84	6	59	59	35	0	4	1.19
14198826--14198867	19	2.2	19	91	4	66	59	35	0	4	1.19
14200521--14200561	13	3.2	13	82	6	57	17	0	41	41	1.49
14200529--14200566	19	2.1	18	90	5	58	18	0	42	39	1.50
14200552--14200594	19	2.3	19	88	8	61	13	0	41	44	1.44
14200804--14200940	48	2.8	49	83	2	168	16	2	37	43	1.64
14201138--14201232	31	3.1	30	76	10	111	17	6	41	34	1.75
14201170--14201280	42	2.6	41	74	5	114	17	3	39	39	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14203537--14203585	19	2.7	17	84	9	62	53	30	4	12	1.57
14204579--14204613	18	1.9	18	88	11	54	57	31	2	8	1.44
14204709--14204749	18	2.3	18	95	0	73	63	14	4	17	1.47
14207671--14207701	15	2.1	15	93	0	53	58	3	16	22	1.52
14208144--14208172	3	9.7	3	100	0	58	65	0	0	34	0.93
14208171--14208213	3	14.3	3	100	0	86	32	0	0	67	0.91
14210586--14210610	2	12.5	2	100	0	50	0	52	0	48	1.00
14211024--14211089	31	2.1	31	100	0	132	18	7	24	50	1.72
14211209--14211267	12	4.7	12	77	10	64	32	0	0	67	0.91
14211215--14211268	18	3.2	17	73	26	53	33	0	0	66	0.92
14211227--14211259	14	2.2	15	89	10	50	33	0	0	66	0.92
14211203--14211261	26	2.2	28	87	6	86	30	0	0	69	0.89
14211852--14211890	14	2.9	13	77	7	51	51	2	5	41	1.38
14212131--14212165	8	4.6	8	89	10	56	37	0	0	62	0.95
14212131--14212186	15	3.7	15	80	4	67	37	0	1	60	1.07
14214295--14214325	2	15.5	2	93	0	53	51	3	0	45	1.17
14220519--14220591	34	2.1	34	87	0	101	28	5	24	41	1.77
14220563--14220636	34	2.2	34	82	4	87	32	10	17	39	1.84
14224916--14225495	185	3.1	185	84	4	720	34	12	10	42	1.77
14225431--14225565	62	2.2	62	82	7	159	34	14	7	43	1.74
14225999--14226057	28	2.1	28	80	0	64	25	5	22	47	1.71
14227794--14227862	34	2.0	34	97	0	129	36	8	13	42	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14229333--14229403	35	2.0	35	86	0	97	33	18	11	36	1.86
14234310--14234366	22	2.6	22	81	10	55	35	10	14	40	1.80
14234215--14234559	126	2.7	126	82	3	383	35	14	12	37	1.84
14234440--14234492	22	2.4	22	87	6	72	30	13	22	33	1.92
14234356--14234717	122	2.9	123	79	4	372	33	17	13	35	1.88
14235130--14235207	41	1.9	41	84	10	106	38	12	15	33	1.85
14235191--14235245	18	3.1	18	89	0	83	27	12	18	41	1.86
14236634--14236680	14	3.2	15	82	14	62	2	10	4	82	0.88
14236632--14236680	25	1.9	26	87	4	73	2	12	4	81	0.91
14243431--14243468	4	9.8	4	88	5	60	73	0	2	23	0.95
14245232--14245275	3	14.7	3	100	0	88	31	0	0	68	0.90
14246476--14246544	28	2.4	29	75	2	77	39	4	7	49	1.50
14250477--14250521	18	2.5	18	81	0	54	33	20	17	28	1.95
14259647--14259698	22	2.4	22	80	6	61	71	3	5	19	1.22
14259954--14260021	27	2.4	30	81	16	83	57	0	0	42	0.98
14260690--14260733	24	1.9	24	86	9	65	43	0	2	54	1.12
14263186--14263229	18	2.4	18	82	14	54	43	4	4	47	1.44
14266236--14266275	1	40.0	1	100	0	80	100	0	0	0	0.00
14271414--14271590	49	3.7	49	82	3	216	40	18	9	31	1.83
14280072--14280106	18	1.9	18	88	0	52	62	0	0	37	0.95
14284968--14285084	40	2.9	40	87	5	130	52	13	2	30	1.54
14285294--14285320	13	2.1	13	100	0	54	48	7	0	44	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14285379--14285435	13	4.1	13	72	14	51	70	3	1	24	1.13
14285546--14285575	12	2.4	13	94	5	53	40	23	10	26	1.86
14287608--14287654	22	2.0	24	84	15	64	55	0	2	42	1.12
14287734--14287773	18	2.2	18	86	8	55	75	2	2	20	1.04
14287738--14287817	27	2.8	29	75	11	74	67	1	5	26	1.18
14288496--14288524	2	14.5	2	100	0	58	48	0	0	51	1.00
14288754--14288839	27	3.0	28	75	17	72	33	6	1	58	1.33
14290858--14290917	28	2.2	28	85	8	79	51	5	10	33	1.57
14297425--14297482	24	2.4	24	94	0	98	44	5	27	22	1.74
14297768--14297793	3	8.7	3	100	0	52	69	0	0	30	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74