genome.fa.s212.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  22  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5366665--5366696	15	2.1	15	94	0	55	40	3	0	56	1.15
5366960--5367013	13	4.1	13	77	18	58	72	1	0	25	0.95
5367000--5367039	21	1.9	21	84	0	53	67	0	5	27	1.11
5375139--5375181	14	3.1	14	86	0	50	37	0	2	60	1.10
5375147--5375193	18	2.7	18	83	3	60	34	0	2	63	1.06
5375659--5375683	9	2.8	9	100	0	50	0	0	8	92	0.40
5380453--5380515	24	2.6	24	85	5	83	7	6	44	41	1.59
5381029--5381066	19	2.0	19	90	10	60	2	5	2	89	0.64
5381037--5381067	16	1.9	16	93	0	53	6	3	3	87	0.75
5381801--5381862	22	2.8	22	81	13	74	32	3	22	41	1.70
5381570--5381942	149	2.5	146	79	6	378	35	7	14	42	1.74
5382188--5382235	22	2.1	23	88	3	71	41	12	16	29	1.85
5384227--5384296	1	70.0	1	73	0	50	4	8	1	85	0.78
5384217--5384297	24	3.4	23	76	10	74	3	11	3	81	0.95
5384226--5384296	26	2.6	27	82	10	83	4	9	1	84	0.81
5384213--5384289	18	4.4	18	75	9	63	3	12	2	80	0.95
5393866--5393890	6	4.2	6	100	0	50	16	32	0	52	1.44
5395555--5395593	17	2.3	17	90	0	60	43	10	12	33	1.77
5395691--5395766	20	3.6	21	72	13	59	42	25	7	25	1.81
5395902--5395951	23	2.2	22	92	3	82	46	10	8	36	1.67
5395902--5395959	23	2.5	22	86	2	80	46	13	6	32	1.70
5397231--5397273	20	2.2	20	87	8	61	6	13	0	79	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5402050--5402082	11	3.0	11	87	12	50	6	21	0	72	1.05
5405410--5405470	32	1.9	32	86	0	86	54	1	6	37	1.37
5406484--5406538	23	2.4	23	96	0	101	34	12	27	25	1.92
5407616--5407682	26	2.6	26	83	6	75	50	0	0	49	1.00
5407723--5407786	22	2.8	23	75	17	71	39	3	0	57	1.14
5408829--5408885	16	3.6	16	75	13	55	54	1	0	43	1.10
5413666--5413705	21	1.9	21	89	0	62	37	12	15	35	1.85
5417984--5418019	2	18.0	2	100	0	72	0	50	0	50	1.00
5421249--5421315	19	3.5	18	76	8	62	25	1	1	71	1.03
5421493--5421587	48	2.0	48	93	0	163	43	10	7	38	1.67
5422279--5422337	4	15.0	4	76	13	52	74	1	1	22	1.00
5422304--5422354	6	8.7	6	79	16	54	76	3	0	19	0.94
5422304--5422341	16	2.3	16	90	4	58	78	0	0	21	0.74
5422304--5422352	11	4.3	11	80	15	55	77	4	0	18	0.92
5425977--5426036	27	2.3	26	82	8	68	33	3	0	63	1.11
5427785--5427809	7	3.6	7	100	0	50	76	0	12	12	1.04
5435788--5435836	26	1.9	25	83	4	62	42	2	2	53	1.24
5435778--5435836	23	2.4	26	83	10	72	40	1	1	55	1.20
5443683--5443711	10	2.9	10	100	0	58	48	20	0	31	1.50
5444352--5445627	332	3.9	333	86	3	1745	38	13	14	34	1.85
5449441--5449501	19	3.2	19	70	11	54	65	8	1	24	1.29
5449708--5449738	16	1.9	16	93	0	53	48	3	0	48	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5450073--5450146	2	37.0	2	100	0	148	0	50	0	50	1.00
5455072--5455108	3	12.3	3	100	0	74	67	0	0	32	0.91
5455436--5455509	29	2.6	27	72	10	67	44	2	0	52	1.15
5457141--5457208	32	2.1	32	84	15	88	55	0	10	33	1.34
5457273--5457309	18	2.2	18	85	9	51	43	0	2	54	1.14
5457599--5457642	22	1.9	24	90	9	74	72	2	0	25	0.96
5458515--5458586	29	2.4	29	86	2	90	38	4	2	54	1.34
5458681--5458715	11	3.2	11	87	0	52	82	0	14	2	0.77
5459589--5459644	2	29.5	2	87	10	82	50	1	0	48	1.11
5460065--5460095	16	1.9	16	93	0	53	58	22	3	16	1.52
5461469--5461541	37	2.0	36	94	5	130	17	13	10	57	1.64
5461536--5461589	20	2.6	21	73	18	51	11	12	0	75	1.04
5462660--5462713	23	2.3	25	75	21	62	53	0	0	46	1.00
5462676--5462723	23	2.1	23	84	7	62	56	2	0	41	1.11
5462987--5463029	23	1.9	22	85	4	59	2	6	6	83	0.88
5463121--5463153	17	1.9	17	93	0	57	0	6	12	81	0.85
5463394--5463449	16	3.5	17	81	13	50	39	1	0	58	1.08
5463475--5463510	17	2.1	17	90	10	56	50	0	2	47	1.15
5463474--5463519	17	2.5	19	76	23	53	47	0	2	50	1.13
5464671--5464709	18	2.2	18	90	0	60	64	0	5	30	1.15
5465104--5465152	19	2.5	19	84	15	57	69	14	6	10	1.35
5466248--5466273	7	3.7	7	100	0	52	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5481405--5481432	12	2.3	12	100	0	56	57	0	0	42	0.99
5481888--5481914	4	6.8	4	100	0	54	48	0	0	51	1.00
5483672--5483721	22	2.3	21	77	12	57	74	2	10	14	1.16
5485482--5485507	9	2.9	9	100	0	52	34	0	0	65	0.93
5485551--5485605	27	2.1	26	83	6	67	29	9	5	56	1.53
5485751--5485799	10	4.8	10	82	5	53	57	6	0	36	1.24
5485780--5485825	18	2.5	18	82	3	56	58	2	2	36	1.22
5485869--5485942	20	3.7	19	80	7	85	55	9	1	33	1.41
5485826--5485903	35	2.2	34	80	13	86	62	7	1	28	1.30
5485869--5485950	10	8.4	9	70	14	56	54	9	1	34	1.41
5485964--5486304	118	3.0	116	80	6	390	19	20	14	44	1.86
5485964--5486302	111	3.0	114	80	6	373	19	20	15	44	1.86
5485964--5486387	118	3.6	116	77	7	360	19	20	14	45	1.85
5486141--5486436	119	2.5	120	77	4	303	20	19	12	46	1.82
5486895--5486981	3	29.7	3	76	9	72	32	3	3	60	1.30
5487766--5487805	19	2.2	18	90	4	62	12	2	0	85	0.71
5487766--5487838	24	3.0	24	74	9	67	16	5	1	76	1.04
5487934--5487970	19	1.9	19	88	0	56	56	13	2	27	1.50
5488038--5488089	25	2.0	27	88	7	81	63	9	0	26	1.25
5489278--5489306	2	14.5	2	100	0	58	51	0	0	48	1.00
5490194--5490251	27	2.1	27	81	6	64	58	6	3	31	1.41
5491837--5491861	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5495100--5495124	13	1.9	13	100	0	50	36	0	0	64	0.94
5511705--5511770	30	2.2	30	81	5	80	46	4	9	39	1.56
5517580--5517608	3	9.7	3	100	0	58	0	0	34	65	0.93
5518172--5518202	2	15.5	2	100	0	62	51	0	48	0	1.00
5521932--5522031	31	3.3	31	68	12	80	57	0	2	41	1.10
5522254--5522296	2	22.0	2	90	4	70	48	0	2	48	1.14
5522252--5522298	23	2.0	23	100	0	94	46	0	4	48	1.21
5522430--5522482	2	26.5	2	80	0	61	43	0	5	50	1.25
5524723--5524770	18	2.6	19	78	15	55	50	2	10	37	1.49
5525200--5525227	3	9.3	3	100	0	56	64	0	0	35	0.94
5525226--5525260	3	11.7	3	100	0	70	34	0	0	65	0.93
5525728--5525787	21	2.8	20	76	20	59	28	0	3	68	1.05
5526624--5526654	14	2.2	14	94	0	53	0	3	6	90	0.55
5527305--5527455	44	3.5	43	75	4	142	40	13	11	34	1.81
5532409--5532462	19	2.8	19	76	13	56	57	0	25	16	1.40
5539999--5540040	3	14.0	3	100	0	84	33	0	0	66	0.92
5542956--5543011	3	19.3	3	75	14	55	28	0	3	67	1.07
5543226--5543281	19	2.9	19	75	17	53	35	5	7	51	1.52
5544503--5544570	16	4.1	16	78	16	66	22	0	4	73	1.01
5544504--5544562	7	8.1	7	75	7	55	18	0	3	77	0.90
5544504--5544570	28	2.7	23	77	18	71	20	0	4	74	0.99
5544507--5544671	26	6.3	26	67	24	87	26	0	4	69	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5544515--5544669	14	11.5	14	70	20	75	27	0	3	68	1.11
5544538--5544634	46	2.3	44	77	16	109	26	1	5	67	1.18
5544538--5544677	42	3.5	41	72	16	109	27	0	4	67	1.15
5544616--5544659	23	1.9	23	86	9	63	31	0	4	63	1.14
5544522--5544602	4	20.8	4	73	12	53	24	1	3	70	1.11
5545619--5545664	21	2.2	21	92	7	76	15	0	6	78	0.95
5545636--5545667	13	2.5	13	100	0	64	15	0	6	78	0.95
5545689--5545776	5	16.8	5	73	19	65	13	6	2	77	1.07
5545687--5545776	16	5.8	14	72	24	58	13	6	2	77	1.05
5545802--5546098	58	5.0	58	77	14	291	45	7	12	35	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74