genome.fa.s212.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  30  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6629211--6629280	35	2.0	35	83	5	88	42	21	11	24	1.85
6629339--6629459	34	3.7	32	73	12	95	37	19	13	30	1.89
6629192--6629449	131	2.0	132	86	0	365	37	18	13	30	1.89
6629233--6629508	131	2.1	131	81	6	317	36	18	14	30	1.90
6629550--6629626	31	2.4	31	82	8	84	42	14	11	31	1.81
6629815--6629858	14	3.2	13	83	3	52	79	13	0	6	0.92
6630215--6630252	20	1.9	20	88	0	58	73	0	2	23	0.95
6630278--6630336	12	4.6	13	79	10	59	66	3	0	30	1.08
6630289--6630336	14	3.6	14	74	25	50	68	2	0	29	1.01
6631868--6631892	3	8.3	3	100	0	50	32	0	0	68	0.90
6632327--6632351	7	3.6	7	100	0	50	72	0	0	28	0.86
6634312--6634391	25	3.2	24	79	13	65	52	3	3	40	1.37
6634938--6634994	28	2.1	28	80	9	64	45	3	0	50	1.18
6637018--6637072	28	2.0	28	81	0	65	61	3	1	32	1.24
6637036--6637082	19	2.4	19	76	16	51	55	4	0	40	1.19
6640830--6642613	181	9.9	177	75	9	1176	40	8	9	41	1.68
6642573--6642648	36	2.1	36	97	0	143	36	10	7	44	1.68
6643008--6646992	181	22.3	181	74	10	2282	39	7	9	42	1.67
6642635--6646992	542	8.1	541	75	8	2944	39	7	9	42	1.67
6645114--6645146	18	1.9	17	88	11	50	48	6	6	39	1.53
6645570--6645594	5	5.0	5	100	0	50	20	0	0	80	0.72
6646187--6646501	169	1.9	168	79	6	359	38	7	9	44	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6646990--6649379	181	13.3	180	76	7	1932	40	8	9	41	1.68
6646990--6649373	361	6.6	359	77	7	1941	40	8	9	41	1.68
6648261--6648293	18	1.9	17	88	11	50	48	6	6	39	1.53
6649795--6649827	18	1.9	17	88	11	50	33	6	12	48	1.65
6649699--6651139	181	8.1	181	73	10	735	40	9	7	41	1.67
6649702--6650768	358	3.0	355	82	6	1124	42	8	6	41	1.63
6650640--6650978	169	2.0	169	81	6	402	37	10	10	40	1.75
6651032--6651253	120	1.9	120	88	3	340	33	11	9	45	1.72
6651135--6652295	360	3.2	353	80	5	1183	40	9	9	40	1.69
6651135--6652292	181	6.4	181	79	4	1085	40	9	9	40	1.69
6661328--6661363	11	3.3	11	92	0	54	13	2	2	80	0.93
6662985--6663044	16	3.8	16	86	4	77	18	5	56	20	1.59
6663102--6663161	8	7.9	8	81	7	54	15	5	8	71	1.27
6663917--6663951	2	17.5	2	100	0	70	51	0	0	48	1.00
6665332--6665383	27	1.9	27	88	0	77	23	11	9	55	1.64
6665342--6665394	27	2.0	27	84	0	70	20	11	11	56	1.65
6670304--6670349	21	2.1	22	84	11	60	43	0	0	56	0.99
6671755--6671797	19	2.3	18	84	11	52	65	2	4	27	1.25
6672007--6672046	20	2.1	19	90	4	62	50	0	0	50	1.00
6672734--6672779	23	2.0	24	82	4	58	28	0	2	69	1.00
6672874--6672903	11	2.7	11	94	0	51	20	0	3	76	0.92
6672925--6672980	20	2.8	20	82	15	64	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6672952--6672995	15	2.9	15	87	12	56	38	0	0	61	0.96
6674698--6674733	2	18.0	2	100	0	72	0	50	0	50	1.00
6675447--6675491	15	3.0	15	83	0	63	55	2	0	42	1.12
6676209--6676267	14	3.9	15	79	16	52	20	3	5	71	1.20
6676352--6676386	18	1.9	18	94	0	61	42	2	0	54	1.15
6676402--6676431	13	2.2	14	94	5	53	23	0	3	73	0.98
6676868--6676917	20	2.5	20	87	9	75	76	8	0	16	1.02
6676874--6676921	26	1.9	24	83	8	60	77	8	0	14	0.99
6676871--6676918	21	2.3	20	85	3	69	77	8	0	14	0.99
6678057--6678710	81	8.1	79	76	7	453	42	16	12	27	1.85
6678204--6678453	39	6.3	38	74	9	162	42	19	13	25	1.87
6678058--6678710	203	3.3	199	77	8	454	42	16	12	28	1.85
6678056--6678711	40	16.3	41	75	9	347	42	16	13	27	1.86
6678093--6678711	122	5.1	119	73	10	339	42	17	13	27	1.86
6690895--6690964	14	5.4	12	70	26	54	21	1	5	71	1.15
6691293--6691333	18	2.3	18	86	0	64	29	4	0	65	1.13
6691476--6691514	5	8.0	5	88	11	55	20	0	2	76	0.90
6691476--6691514	11	4.0	10	84	15	55	20	0	2	76	0.90
6692104--6692159	23	2.2	27	84	12	75	3	1	14	80	0.93
6694276--6694330	24	2.4	23	88	11	78	50	0	1	47	1.11
6694276--6694330	22	2.4	21	82	14	65	50	0	1	47	1.11
6694765--6694809	8	5.8	8	81	2	56	62	0	0	37	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6694766--6694825	14	4.2	15	78	14	56	65	0	0	35	0.93
6694781--6694814	16	2.1	16	88	0	50	70	0	0	29	0.87
6697490--6697524	15	2.3	15	95	0	61	20	5	2	71	1.19
6698347--6698390	20	2.2	19	84	8	52	75	4	4	15	1.14
6698871--6698926	21	2.5	22	76	20	62	48	3	1	46	1.30
6702324--6702414	7	13.6	7	72	20	61	21	1	30	46	1.59
6702350--6702414	27	2.4	28	84	5	89	21	0	32	46	1.52
6702382--6702422	21	2.0	20	85	4	55	19	0	34	46	1.50
6704144--6704177	18	1.9	18	94	5	61	50	8	0	41	1.34
6705962--6706010	22	2.2	23	86	13	68	51	0	0	48	1.00
6725151--6725187	19	1.9	19	88	0	56	75	2	8	13	1.13
6728377--6728584	3	70.3	3	78	10	205	33	2	2	61	1.24
6729349--6729438	5	17.6	5	73	15	69	17	2	4	75	1.07
6729353--6729393	19	2.2	18	91	4	64	14	2	2	80	0.92
6729348--6729438	22	3.9	23	79	10	96	18	2	4	74	1.09
6741531--6741717	3	67.7	3	74	14	118	31	3	4	59	1.36
6741531--6741611	25	3.3	25	84	1	101	28	4	1	65	1.21
6741524--6741623	31	3.3	31	77	11	98	28	4	3	65	1.26
6741629--6741715	5	16.2	5	81	9	75	35	2	5	56	1.36
6742515--6742561	5	9.8	5	81	9	53	78	4	2	14	0.99
6742520--6742556	18	2.1	17	90	5	56	78	5	0	16	0.93
6742514--6742563	23	2.2	23	88	0	73	80	4	2	14	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6743391--6743482	3	30.7	3	86	0	130	65	2	3	29	1.20
6743732--6743798	26	2.6	25	79	6	80	26	29	23	19	1.98
6744132--6744601	110	4.2	110	78	6	378	38	13	24	22	1.91
6751456--6751480	8	3.1	8	100	0	50	88	0	0	12	0.53
6754672--6754722	23	2.2	22	86	10	66	78	3	5	11	1.06
6756101--6756303	101	2.0	101	99	0	397	28	22	25	24	1.99
6756349--6756413	25	2.8	22	71	15	58	21	4	1	72	1.11
6761051--6761102	27	2.0	26	92	3	86	28	9	17	44	1.80
6763019--6763078	30	2.0	30	90	6	95	28	10	20	41	1.84
6763574--6763607	13	2.6	13	95	0	59	44	0	2	52	1.16
6763763--6763821	28	2.1	28	96	0	109	44	15	18	22	1.87
6764215--6764265	12	4.3	11	79	16	57	64	0	1	33	1.05
6767667--6767974	163	1.9	162	90	0	490	28	22	14	34	1.93
6780945--6780976	2	16.0	2	100	0	64	50	0	0	50	1.00
6781766--6781821	23	2.4	23	94	5	96	39	0	8	51	1.33
6784493--6784523	16	1.9	16	100	0	62	32	6	16	45	1.72
6785015--6785044	15	2.0	15	93	0	51	76	6	13	3	1.11
6787321--6787379	14	4.2	14	73	4	57	77	0	5	16	0.93
6787684--6787726	14	2.9	15	83	16	54	81	0	9	9	0.88
6788229--6788268	17	2.4	16	84	8	53	82	7	0	10	0.84
6788206--6788267	20	3.0	20	72	11	54	77	6	3	12	1.08
6788590--6788660	33	2.2	33	85	10	92	73	1	5	19	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6788602--6788651	24	2.1	23	85	10	66	76	0	8	16	1.02
6788615--6788662	24	2.0	24	84	8	62	72	2	8	16	1.18
6787258--6794804	664	11.5	662	87	6	10363	65	5	11	17	1.42
6787258--6794804	660	11.5	661	87	6	10346	65	5	11	17	1.42
6789821--6789880	24	2.5	24	94	2	104	68	0	11	20	1.20
6789821--6789887	24	2.9	24	88	4	75	68	0	13	17	1.21
6789947--6790002	22	2.7	21	84	15	80	75	0	5	19	1.00
6789946--6790053	23	4.3	24	72	17	76	72	1	7	18	1.17
6790585--6790642	20	2.8	20	78	16	66	74	0	3	22	0.97
6790579--6790639	28	2.2	28	82	5	79	72	0	3	24	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74