genome.fa.s212.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  15  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4060322--4060485	79	2.1	77	79	12	183	57	1	1	39	1.17
4060508--4060607	18	5.6	19	68	18	56	48	1	1	50	1.14
4060515--4060596	16	4.9	16	74	15	60	47	0	1	51	1.08
4060560--4060629	25	2.8	24	89	8	104	50	0	0	50	1.00
4060558--4060615	15	4.2	15	73	24	56	50	0	0	50	1.00
4060560--4060629	9	8.2	9	69	23	53	50	0	0	50	1.00
4060744--4060777	14	2.4	14	90	0	50	32	0	5	61	1.20
4061063--4061121	30	2.0	30	82	0	73	44	11	3	40	1.58
4061534--4061591	27	2.1	29	83	6	75	29	0	5	65	1.14
4061581--4061626	23	2.0	23	95	0	83	39	6	0	54	1.26
4069381--4069443	24	2.6	23	74	18	65	58	3	1	36	1.23
4070616--4070671	16	3.4	16	83	11	60	32	1	0	66	1.03
4070616--4070672	25	2.3	24	77	14	62	31	1	0	66	1.02
4070667--4070737	19	3.7	18	78	15	72	49	1	0	49	1.09
4070670--4070734	20	3.2	20	84	6	87	47	1	0	50	1.10
4072095--4072152	26	2.1	26	81	9	62	36	1	1	60	1.17
4072409--4072447	13	3.0	14	85	14	57	28	0	0	71	0.86
4072408--4072447	9	4.2	10	84	15	50	30	0	0	70	0.88
4076295--4076342	12	4.3	11	80	20	55	25	2	0	72	0.95
4079240--4079298	25	2.4	24	81	10	66	47	15	1	35	1.55
4080587--4080622	19	2.0	18	89	10	56	66	0	16	16	1.25
4097376--4097431	6	9.3	6	82	7	51	1	23	35	39	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4097376--4097421	12	3.8	12	88	0	65	2	21	34	41	1.66
4097366--4097431	24	2.8	24	85	0	87	3	19	34	42	1.67
4097376--4097431	18	3.1	18	84	0	67	1	23	35	39	1.65
4103470--4103507	15	2.4	16	82	13	51	63	2	0	34	1.09
4103739--4103784	23	2.1	21	84	8	56	36	10	4	47	1.58
4103884--4103908	2	12.5	2	100	0	50	48	0	0	52	1.00
4104069--4104127	21	2.8	21	92	0	100	54	0	5	40	1.23
4104924--4104968	21	2.1	21	83	0	54	55	2	4	37	1.32
4105235--4105277	22	2.0	22	86	9	61	46	2	0	51	1.13
4105231--4105282	22	2.4	21	75	15	52	50	1	0	48	1.12
4105656--4105768	23	4.7	24	71	14	90	56	0	0	41	1.11
4105703--4105760	25	2.4	23	83	11	71	62	0	0	37	0.96
4105705--4105763	24	2.4	25	82	2	75	61	0	0	38	0.96
4106359--4106399	20	2.0	20	95	0	73	41	2	0	56	1.13
4106362--4106410	20	2.5	20	86	0	62	36	6	2	55	1.37
4106345--4106433	20	4.8	18	71	16	56	46	4	1	48	1.30
4106439--4106478	15	2.8	15	79	20	50	45	0	0	55	0.99
4113443--4113489	16	3.0	16	84	3	60	53	0	0	46	1.00
4113449--4113489	8	5.1	8	81	0	55	56	0	0	43	0.99
4114250--4114294	22	2.1	22	83	4	56	40	11	4	44	1.60
4115490--4115514	7	3.6	7	100	0	50	72	0	0	28	0.86
4115762--4115819	3	19.0	3	91	3	89	62	0	1	36	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4118882--4118906	12	2.1	12	100	0	50	32	0	0	68	0.90
4118911--4118950	20	2.0	21	90	5	64	70	5	0	25	1.08
4120582--4120619	20	1.9	20	89	10	60	73	15	0	10	1.09
4130002--4130193	47	4.0	47	80	3	206	31	11	18	38	1.87
4130013--4130223	94	2.2	93	80	9	230	30	11	19	37	1.88
4130007--4130223	47	4.6	47	77	11	194	32	11	19	36	1.88
4130473--4130535	28	2.2	29	85	2	83	26	23	17	31	1.97
4130632--4130688	29	1.9	30	92	3	98	80	5	7	7	1.01
4130633--4130683	8	6.8	8	82	13	56	80	3	7	7	1.01
4131803--4131842	20	2.0	21	90	5	64	70	5	0	25	1.08
4133261--4133291	11	2.8	11	100	0	62	38	12	9	38	1.77
4142206--4142296	43	2.1	43	100	0	182	30	16	2	50	1.57
4143083--4143172	36	2.6	34	79	6	99	32	16	14	36	1.89
4143474--4143553	42	1.9	42	84	0	106	32	10	12	45	1.75
4152146--4152185	2	20.5	2	89	5	64	52	2	0	45	1.14
4152179--4152221	20	2.1	20	82	4	50	41	2	2	53	1.26
4152191--4152242	20	2.5	21	87	3	70	42	1	0	55	1.10
4152191--4152244	21	2.7	20	88	2	72	40	1	0	57	1.09
4156481--4156542	29	2.2	28	85	2	79	50	1	4	43	1.33
4157979--4158004	11	2.4	11	100	0	52	53	0	0	46	1.00
4158019--4158063	21	2.1	21	92	8	74	51	0	0	48	1.00
4166731--4166782	27	1.9	27	92	0	86	21	5	5	67	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4167525--4167585	20	2.8	21	82	12	79	49	0	0	50	1.00
4168723--4168769	8	5.9	8	84	0	58	51	40	8	0	1.33
4168731--4168771	2	20.5	2	84	0	55	48	43	7	0	1.30
4174687--4174711	8	3.1	8	100	0	50	40	24	0	36	1.55
4179082--4179117	2	18.0	2	100	0	72	50	0	0	50	1.00
4184146--4184188	19	2.2	20	87	4	61	30	2	2	65	1.18
4184712--4184737	13	2.0	13	100	0	52	30	0	0	69	0.89
4185163--4185210	20	2.3	21	85	3	62	56	0	2	41	1.11
4185803--4185849	20	2.3	20	79	17	53	44	2	4	48	1.34
4188230--4188273	12	3.4	14	79	17	51	34	0	4	61	1.16
4188230--4188276	25	1.9	24	86	4	67	36	0	4	59	1.17
4189244--4189315	28	2.5	28	74	14	67	66	5	8	19	1.38
4190820--4190877	23	2.4	25	72	18	61	55	3	0	41	1.17
4209785--4209834	3	16.7	3	91	8	84	68	0	0	32	0.90
4209785--4209831	20	2.4	19	93	6	85	68	0	0	31	0.90
4210954--4210987	2	17.0	2	87	0	50	47	2	0	50	1.16
4211889--4211931	18	2.4	18	88	3	61	51	0	0	48	1.00
4213845--4213877	15	2.2	15	100	0	66	30	6	21	42	1.77
4216110--4216185	37	2.1	37	100	0	152	14	26	15	43	1.85
4218825--4218870	21	2.2	21	84	3	58	32	8	2	56	1.42
4218832--4218871	21	1.9	21	94	0	71	30	10	0	60	1.30
4228265--4228300	18	1.9	19	88	5	56	66	11	5	16	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4228713--4228775	21	2.8	24	76	14	78	42	7	11	38	1.70
4228822--4228874	26	2.0	28	88	7	83	58	0	0	41	0.98
4233967--4233992	6	4.3	6	100	0	52	30	0	0	69	0.89
4234010--4234146	46	2.9	48	81	9	165	32	5	0	62	1.17
4234004--4234146	49	2.9	51	77	15	140	32	5	0	62	1.18
4234036--4234129	20	5.1	20	69	24	62	32	6	0	60	1.22
4234061--4234123	10	5.9	11	75	12	60	31	6	0	61	1.21
4234054--4234132	32	2.5	31	82	9	90	32	5	0	62	1.17
4234083--4234138	22	2.6	22	91	2	87	32	5	0	62	1.18
4234994--4235037	16	2.5	17	82	14	54	34	0	0	65	0.93
4234997--4235042	13	3.2	15	76	20	53	34	0	2	63	1.07
4235061--4235098	5	7.4	5	83	16	51	15	2	0	81	0.80
4235124--4235258	59	2.3	58	94	1	234	43	6	8	40	1.62
4235221--4235307	45	1.9	46	88	2	131	40	5	9	44	1.60
4245778--4245841	11	5.7	11	83	12	78	81	0	10	7	0.88
4245778--4245844	21	3.1	21	87	8	82	80	0	11	7	0.90
4246786--4246967	92	2.0	92	96	0	337	37	15	15	31	1.89
4247581--4247615	18	2.0	17	88	5	52	31	2	0	65	1.07
4247582--4247657	32	2.5	31	80	15	81	31	5	0	63	1.17
4247589--4247639	14	3.6	14	76	5	50	29	5	0	64	1.17
4247608--4247663	22	2.6	22	91	2	87	32	5	0	62	1.18
4248673--4248773	41	2.5	40	85	10	134	44	3	11	39	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4248686--4248773	41	2.1	41	91	4	142	44	4	10	40	1.59
4248724--4248894	63	2.9	56	75	15	166	41	5	11	41	1.64
4248686--4248787	41	2.5	41	87	4	125	44	3	9	42	1.56
4250451--4250493	19	2.3	19	87	0	59	41	27	6	23	1.80
4252137--4252454	157	2.0	157	90	1	494	41	14	10	34	1.79
4258827--4259089	124	2.1	124	82	2	314	36	17	8	38	1.80
4258748--4259400	294	2.2	294	84	3	832	34	15	11	38	1.84
4259129--4259616	124	4.1	124	77	13	471	31	16	12	39	1.86
4259165--4259634	232	2.0	232	89	2	712	32	16	13	38	1.87
4259408--4259641	124	1.9	123	81	5	283	32	16	11	38	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74