genome.fa.s212.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  28  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6377377--6377401	9	2.8	9	100	0	50	0	8	0	92	0.40
6385379--6385535	52	3.0	53	86	3	212	42	8	22	26	1.82
6386020--6386088	31	2.2	31	89	0	111	27	24	23	24	2.00
6390355--6390432	39	2.0	39	92	0	129	23	16	17	42	1.89
6390646--6390679	2	17.0	2	100	0	68	50	0	0	50	1.00
6390931--6391050	9	13.8	8	76	17	82	66	4	0	28	1.15
6390948--6390992	10	4.6	10	86	13	67	64	0	0	35	0.94
6390970--6391049	25	3.2	25	80	7	90	68	3	0	27	1.06
6390970--6391050	17	4.8	17	75	15	78	69	3	0	27	1.05
6390951--6391058	34	3.1	34	78	8	110	67	2	0	29	1.05
6391262--6391309	25	2.0	25	83	4	62	50	4	8	37	1.52
6391480--6391541	24	2.6	24	82	5	63	24	3	6	66	1.30
6391774--6391828	21	2.7	21	74	2	58	27	1	3	67	1.17
6391812--6391837	9	2.9	9	100	0	52	23	0	7	69	1.14
6391840--6391889	18	2.7	18	78	3	55	24	0	10	66	1.22
6391822--6391890	17	3.9	18	69	16	54	21	1	10	66	1.29
6391893--6391940	25	2.0	25	83	4	62	12	4	8	75	1.18
6394028--6394148	62	2.0	62	89	0	188	50	7	9	32	1.63
6396872--6396896	13	1.9	13	100	0	50	76	0	0	24	0.80
6397051--6397085	12	2.8	13	86	8	54	60	14	0	25	1.35
6397154--6397196	14	3.2	13	81	18	52	53	13	4	27	1.60
6397197--6397235	20	2.0	20	89	0	60	51	28	7	12	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6399609--6399653	3	15.0	3	80	0	54	60	8	0	31	1.28
6402980--6403153	68	2.6	69	78	8	178	33	17	18	31	1.94
6402864--6403280	35	12.3	34	72	10	257	33	16	19	30	1.94
6403026--6403234	33	6.3	34	74	11	157	34	15	19	30	1.93
6403026--6403280	34	7.6	34	75	6	180	34	15	19	31	1.93
6403311--6403397	34	2.6	34	78	12	99	36	14	16	32	1.89
6404375--6404420	19	2.5	19	86	10	60	82	0	2	15	0.76
6405265--6405323	3	19.7	3	92	0	100	66	30	1	1	1.12
6405322--6405356	3	11.7	3	100	0	70	68	0	0	31	0.90
6405699--6406093	89	4.4	89	79	6	370	44	13	21	20	1.86
6405687--6406103	178	2.3	179	81	4	459	44	13	21	19	1.85
6413535--6413560	5	5.2	5	100	0	52	80	0	0	19	0.71
6416082--6416127	22	2.1	22	87	0	65	58	10	10	19	1.61
6416722--6416776	28	1.9	28	82	17	69	18	7	7	67	1.38
6416867--6416905	5	8.0	5	83	16	55	84	0	0	15	0.62
6416865--6416901	16	2.4	16	95	4	67	83	0	0	16	0.64
6416867--6416915	11	4.9	9	85	14	53	83	0	4	12	0.77
6416866--6416917	25	2.2	24	86	6	70	84	0	3	11	0.74
6417737--6417780	3	14.7	3	100	0	88	68	0	0	31	0.90
6418443--6418512	32	2.2	33	84	2	88	42	15	4	37	1.67
6418270--6418545	98	2.8	97	75	5	268	38	16	11	34	1.84
6418708--6418874	36	4.7	36	69	10	92	13	20	16	50	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6418718--6418823	36	2.9	36	79	6	108	10	20	19	49	1.78
6420639--6420679	21	2.0	21	85	0	55	70	0	0	29	0.87
6420648--6420673	13	2.0	13	100	0	52	76	0	0	23	0.78
6420812--6420853	14	3.1	14	79	6	50	54	11	4	28	1.57
6426566--6427148	236	2.5	234	77	9	551	51	4	12	31	1.60
6430152--6430182	10	3.2	10	90	9	55	19	0	0	80	0.71
6430152--6430197	9	4.9	9	84	7	56	26	0	0	73	0.83
6430153--6430197	19	2.4	19	81	11	56	26	0	0	73	0.84
6435246--6435322	37	2.0	37	80	9	84	42	5	2	49	1.39
6437043--6437075	17	1.9	17	93	0	57	21	18	0	60	1.36
6437322--6437353	15	2.1	15	94	0	55	21	0	21	56	1.43
6437335--6437395	21	2.9	21	76	9	61	14	1	31	52	1.52
6437328--6437395	14	4.8	14	73	8	57	16	1	29	52	1.52
6439014--6439055	21	2.0	21	90	0	66	47	2	0	50	1.14
6439009--6439041	12	2.8	12	95	0	57	45	0	0	54	0.99
6439350--6439987	135	4.6	136	72	13	460	44	13	21	20	1.85
6439927--6440054	67	1.9	64	87	6	175	49	13	18	18	1.80
6439922--6440035	34	3.4	34	67	11	99	47	11	21	19	1.81
6440067--6440253	34	5.5	33	72	14	112	44	10	24	20	1.82
6439509--6440473	486	2.0	486	87	1	1407	45	12	21	20	1.83
6440255--6440504	135	1.9	135	81	1	304	46	12	19	22	1.82
6439994--6440898	419	2.2	419	87	2	1298	45	12	21	20	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6440590--6440676	34	2.6	34	83	3	104	48	12	21	17	1.80
6440832--6440957	67	1.9	67	83	3	164	51	12	16	19	1.76
6439994--6441061	419	2.5	413	81	7	980	46	11	20	20	1.82
6440413--6441628	486	2.5	484	84	3	1602	46	12	20	20	1.82
6439322--6441383	905	2.3	904	87	2	2931	45	12	20	20	1.84
6441177--6441244	34	2.0	35	82	2	84	51	17	17	13	1.76
6441161--6441419	134	1.9	134	80	4	299	44	13	20	21	1.86
6441320--6441494	67	2.6	66	80	8	192	48	11	18	21	1.79
6441486--6441558	36	2.0	38	86	5	105	50	5	20	23	1.69
6453545--6453577	17	1.9	17	93	0	57	21	18	0	60	1.36
6453829--6453885	15	3.8	15	74	6	53	22	0	24	52	1.47
6454384--6454452	34	2.0	34	83	8	86	73	5	1	18	1.10
6454773--6454816	19	2.3	19	92	0	70	6	38	34	20	1.79
6455084--6455134	6	8.0	6	79	12	57	1	1	15	80	0.89
6455084--6455134	20	2.6	19	84	6	66	1	1	15	80	0.89
6455551--6455592	21	2.0	21	90	0	66	47	2	0	50	1.14
6455546--6455578	12	2.8	12	95	0	57	45	0	0	54	0.99
6458278--6458315	19	2.0	19	100	0	76	42	5	10	42	1.62
6459160--6459200	8	5.1	8	87	0	64	41	0	0	58	0.98
6459151--6459200	24	2.1	24	88	0	73	40	0	0	60	0.97
6459190--6459241	22	2.5	22	90	6	81	51	0	0	48	1.00
6468061--6468096	19	1.9	18	88	5	54	72	5	11	11	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6477459--6477507	21	2.3	21	82	0	62	38	0	18	42	1.50
6477706--6477730	12	2.1	12	100	0	50	76	0	0	24	0.80
6479350--6479397	20	2.3	20	79	10	53	45	12	8	33	1.72
6480790--6480868	15	5.3	15	75	15	56	20	1	27	50	1.56
6480871--6480939	7	9.4	7	70	14	50	26	1	26	46	1.61
6480892--6480932	15	2.7	15	88	3	55	29	0	19	51	1.47
6480908--6480964	22	2.5	22	82	2	69	31	0	19	49	1.49
6480892--6480932	16	2.6	16	88	3	57	29	0	19	51	1.47
6480926--6480996	31	2.3	30	81	11	81	26	1	26	45	1.62
6480973--6481082	41	2.7	42	80	9	120	27	2	26	43	1.68
6481183--6481267	7	12.0	7	71	7	64	18	0	34	47	1.49
6481183--6481379	21	9.7	21	67	23	93	19	1	32	47	1.56
6481171--6481336	30	5.7	30	77	9	164	17	1	33	47	1.56
6481104--6481378	59	4.8	58	78	11	234	19	1	31	47	1.59
6481183--6481380	51	3.8	51	72	17	145	19	1	32	46	1.57
6481321--6481381	30	2.0	30	93	0	104	24	0	29	45	1.53
6481676--6481738	3	21.0	3	100	0	126	33	0	0	66	0.92
6481773--6481810	20	2.0	20	89	5	60	23	2	5	68	1.23
6481881--6481917	19	1.9	19	94	0	65	27	2	2	67	1.17
6481882--6481923	19	2.2	19	86	0	57	30	2	2	64	1.19
6481985--6482018	4	8.8	4	87	6	52	79	2	0	17	0.86
6482630--6482654	9	2.8	9	100	0	50	8	0	0	92	0.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6483373--6483599	74	3.1	70	75	11	199	51	16	16	16	1.77
6483370--6483571	37	5.5	36	71	8	138	51	15	15	17	1.77
6483667--6483736	33	2.2	32	81	2	86	45	15	11	27	1.80
6483641--6483847	98	2.1	98	81	5	240	36	12	16	33	1.87
6483676--6483851	33	5.4	32	68	9	115	36	13	16	33	1.87
6483860--6483947	31	2.9	30	78	11	106	35	12	17	35	1.87
6484104--6484166	23	2.8	21	76	11	63	25	17	19	38	1.93
6485205--6485273	12	6.3	11	75	12	54	4	15	0	79	0.88
6485201--6485266	32	2.1	32	85	0	87	6	16	0	77	0.96
6485609--6485645	15	2.3	17	86	9	51	13	8	10	67	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74