genome.fa.s212.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  45  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9186930--9186996	33	2.0	33	97	0	125	53	5	10	29	1.59
9188529--9188607	25	3.2	25	82	5	108	32	2	8	55	1.44
9189070--9189244	30	5.9	29	86	7	124	34	26	9	29	1.88
9189071--9189244	60	2.9	58	80	10	190	34	27	9	28	1.88
9192159--9192233	34	2.2	32	77	9	78	30	8	1	60	1.34
9192771--9192802	3	10.7	3	93	0	55	65	0	3	31	1.08
9192818--9192852	16	2.1	18	89	10	56	77	2	2	17	1.02
9195440--9195479	15	2.5	17	84	12	57	25	10	2	62	1.39
9195678--9195711	14	2.5	14	85	4	52	23	0	5	70	1.09
9196124--9196156	14	2.4	14	94	0	57	63	3	0	33	1.10
9202045--9202086	21	2.0	22	85	4	59	26	2	7	64	1.32
9202861--9202912	19	2.9	18	82	5	61	65	0	1	32	1.04
9204738--9204767	15	2.0	15	93	0	51	33	0	3	63	1.11
9207032--9207082	10	5.2	10	77	11	52	66	3	1	27	1.20
9207045--9207096	19	2.8	19	88	5	72	67	0	1	30	1.02
9213366--9213647	146	1.9	146	90	2	451	39	7	18	35	1.79
9221847--9221876	15	2.0	15	100	0	60	46	20	20	13	1.83
9222286--9222406	59	2.1	59	88	0	179	37	12	15	34	1.85
9227225--9227262	3	12.7	3	100	0	76	68	0	0	31	0.90
9230091--9230167	38	2.0	38	92	5	129	32	31	7	28	1.85
9236821--9236887	34	1.9	34	82	14	84	56	1	7	34	1.36
9236978--9237011	16	2.1	16	88	0	50	61	11	8	17	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9237526--9237577	20	2.6	20	87	0	77	46	17	9	26	1.79
9237786--9238163	143	2.6	144	80	7	369	32	8	14	44	1.75
9239780--9239836	19	3.1	18	82	9	62	36	38	8	15	1.79
9239827--9239877	19	2.6	19	78	3	57	49	33	3	13	1.61
9239908--9239938	15	2.1	14	94	5	53	45	25	0	29	1.54
9239908--9239938	7	4.3	7	92	8	53	45	25	0	29	1.54
9239945--9239984	20	2.0	20	95	0	71	47	35	0	17	1.48
9240385--9240426	21	1.9	23	85	9	61	40	9	9	40	1.70
9243981--9244016	17	2.3	15	90	9	54	2	36	0	61	1.11
9244654--9244712	23	2.5	22	86	10	73	20	0	3	76	0.93
9246286--9246337	17	3.1	17	72	10	54	42	0	0	57	0.98
9254591--9254638	24	2.0	23	84	4	60	56	0	4	39	1.19
9255502--9255574	24	3.0	24	71	16	69	60	0	5	34	1.20
9256365--9256426	22	2.8	21	80	7	61	61	0	1	37	1.06
9263254--9263658	145	2.8	143	78	5	447	41	11	13	33	1.80
9264086--9264160	7	10.7	7	72	23	61	2	1	13	82	0.84
9264089--9264162	31	2.3	33	84	6	91	4	1	13	81	0.91
9264102--9264159	18	3.2	19	85	9	77	1	1	15	81	0.86
9264084--9264160	17	4.3	18	73	16	70	2	1	12	83	0.82
9264497--9264551	22	2.5	22	82	8	67	30	9	23	36	1.86
9264525--9264806	44	6.4	44	74	7	207	31	13	22	32	1.93
9264630--9264756	22	5.8	22	83	0	164	32	14	22	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9264630--9264802	66	2.6	66	80	5	190	30	15	23	30	1.95
9264627--9264813	22	8.5	22	73	13	109	31	14	23	31	1.94
9264767--9264819	22	2.4	22	90	0	88	33	16	20	28	1.95
9265191--9265237	18	2.6	18	93	0	76	40	14	21	23	1.90
9265422--9265537	61	1.9	61	80	3	135	33	12	15	37	1.86
9267501--9267540	16	2.6	16	84	7	57	32	7	5	55	1.50
9277075--9277108	16	2.1	16	88	0	50	29	0	0	70	0.87
9277461--9277502	3	14.0	3	100	0	84	33	0	0	66	0.92
9283937--9283990	22	2.5	22	93	0	90	33	11	16	38	1.84
9288013--9288040	9	3.1	9	100	0	56	10	25	32	32	1.90
9298772--9298810	16	2.4	16	82	0	51	28	0	2	69	1.02
9299481--9299513	16	2.0	17	88	5	50	54	6	6	33	1.50
9311983--9312069	22	3.8	22	76	20	81	3	1	13	81	0.88
9311986--9312069	8	10.4	8	77	16	66	3	1	13	82	0.86
9312405--9312446	22	1.9	22	90	0	66	28	11	23	35	1.91
9312411--9312457	22	2.1	22	84	7	60	27	10	23	38	1.88
9312426--9312683	66	3.9	64	73	9	193	32	12	21	33	1.91
9312454--9312569	44	2.6	44	77	10	112	32	10	20	36	1.87
9312499--9312687	22	8.6	22	75	6	109	31	13	23	32	1.93
9312497--9312599	44	2.3	43	86	3	134	30	11	22	35	1.90
9312518--9312723	44	4.7	44	77	7	150	32	14	21	31	1.93
9314056--9314346	130	2.2	129	81	6	309	18	18	9	53	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9322124--9322161	16	2.4	16	82	4	51	68	18	5	7	1.34
9325375--9325409	3	11.7	3	93	0	61	34	2	0	62	1.10
9327077--9327404	143	2.3	143	81	4	374	40	13	13	32	1.82
9333847--9333877	6	5.0	6	96	4	53	80	0	0	19	0.71
9341871--9341910	16	2.5	16	91	0	62	35	2	22	40	1.68
9345459--9345492	16	2.2	15	89	5	50	32	0	2	64	1.08
9355512--9355698	97	1.9	99	81	2	225	39	9	9	41	1.69
9356808--9356843	2	18.0	2	100	0	72	50	0	0	50	1.00
9356835--9356913	37	2.1	38	97	2	151	43	18	5	32	1.72
9358597--9358645	10	4.7	10	82	9	62	57	0	2	40	1.10
9359726--9359771	18	2.5	19	75	10	51	52	6	8	32	1.58
9360343--9360419	29	2.6	28	79	20	79	57	3	3	35	1.36
9360601--9360780	60	3.0	60	95	1	326	46	11	8	33	1.70
9361005--9361109	38	2.8	38	92	1	158	30	32	18	19	1.95
9361994--9362022	3	9.7	3	100	0	58	68	0	0	31	0.89
9362027--9362068	22	1.9	22	85	0	57	59	4	14	21	1.53
9362774--9362808	17	2.0	18	94	5	63	40	5	14	40	1.69
9367970--9368009	21	1.9	21	84	0	53	60	2	2	35	1.24
9369574--9369612	11	3.5	11	89	3	51	56	2	0	41	1.13
9371681--9371721	22	1.9	22	85	5	57	68	4	17	9	1.35
9382460--9382506	24	2.0	24	83	8	60	19	25	2	53	1.56
9394054--9394085	11	2.8	12	90	9	50	81	0	15	3	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9396849--9396966	48	2.5	49	76	5	125	27	9	20	43	1.82
9405083--9405119	2	19.0	2	88	5	58	51	0	2	45	1.15
9405895--9405926	3	10.3	3	93	6	55	34	0	31	34	1.58
9406548--9406611	32	2.0	32	96	0	119	43	4	6	45	1.50
9411542--9411948	144	2.8	142	82	3	442	28	14	14	41	1.86
9411607--9411948	142	2.4	144	82	3	404	29	14	14	41	1.86
9417582--9417631	25	2.0	25	96	0	91	52	10	16	22	1.73
9420174--9420446	139	1.9	143	79	12	310	52	10	19	17	1.74
9422096--9422352	107	2.4	107	91	0	408	16	19	13	50	1.77
9422094--9422286	36	5.4	36	74	6	151	16	16	13	53	1.73
9422120--9422352	36	6.5	36	73	3	166	16	20	13	49	1.79
9422324--9422379	27	2.1	27	89	0	85	8	28	19	42	1.81
9422366--9422461	35	2.8	35	82	7	108	17	19	12	50	1.78
9422366--9422492	35	3.6	36	75	10	102	19	20	12	47	1.82
9422564--9422678	36	3.2	35	80	4	122	17	16	12	53	1.72
9422529--9422677	72	2.1	72	81	5	167	19	14	12	53	1.72
9422468--9422678	108	2.0	108	79	9	234	19	16	12	52	1.75
9422577--9422817	36	6.7	36	74	8	159	20	14	13	52	1.74
9422982--9423141	36	4.5	36	75	5	128	21	12	12	53	1.71
9423182--9423255	35	2.1	35	85	5	96	17	18	16	47	1.83
9423287--9423424	37	3.8	36	77	2	141	12	15	16	55	1.69
9423287--9423432	73	2.0	74	84	1	195	13	15	16	55	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9423371--9423479	53	2.0	54	84	5	141	16	12	13	56	1.67
9423427--9423583	36	4.4	36	78	4	113	17	13	12	56	1.67
9423587--9423646	13	4.8	12	80	11	66	83	11	3	1	0.84
9423586--9423646	19	3.3	18	80	14	70	83	11	3	1	0.83
9426374--9426398	13	1.9	13	100	0	50	48	16	8	28	1.74
9429540--9429618	41	1.9	41	97	0	149	40	16	17	25	1.90
9430798--9430841	16	2.7	15	83	13	52	65	4	18	11	1.40
9433278--9433347	32	2.1	35	84	12	94	67	8	1	22	1.26
9433302--9433371	29	2.4	28	83	6	95	64	7	1	27	1.28
9436705--9436740	3	12.0	3	100	0	72	66	0	0	33	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74