genome.fa.s212.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  64  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12682601--12682638	20	1.9	20	94	0	67	44	0	7	47	1.32
12682601--12682652	20	2.6	20	81	6	61	46	1	5	46	1.38
12682632--12682661	12	2.4	13	94	5	53	43	3	0	53	1.17
12688297--12688340	19	2.2	20	84	11	56	9	20	2	68	1.28
12694147--12694185	20	2.0	20	89	0	60	46	2	2	48	1.29
12695211--12695549	92	3.7	92	96	0	615	35	17	10	36	1.84
12695211--12695685	197	2.5	189	91	4	762	35	17	9	36	1.83
12695533--12695562	13	2.3	13	100	0	60	33	20	16	30	1.94
12695441--12695654	105	2.0	105	96	0	392	35	18	10	35	1.85
12699178--12699221	22	2.0	22	95	0	79	43	13	11	31	1.80
12703105--12703148	22	2.0	22	95	0	79	43	13	11	31	1.80
12704462--12704503	21	2.0	22	90	4	68	2	23	9	64	1.35
12710847--12711622	387	2.0	387	100	0	1552	27	21	19	31	1.97
12719654--12719681	1	28.0	1	100	0	56	0	0	0	100	0.00
12721908--12721986	31	2.5	31	91	2	122	39	7	6	46	1.58
12722414--12722440	14	1.9	14	100	0	54	51	0	7	40	1.30
12722430--12722517	37	2.3	38	92	3	151	54	5	4	35	1.45
12722497--12722553	28	2.0	29	89	3	89	52	3	3	40	1.35
12722745--12722788	21	2.0	21	86	4	61	29	4	9	56	1.50
12723336--12723398	19	3.3	19	76	14	58	14	1	7	76	1.08
12723514--12723542	11	2.5	12	88	11	51	31	0	0	68	0.89
12725003--12725047	7	5.9	8	80	19	51	80	0	11	8	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12725002--12725045	23	2.0	22	86	4	61	81	0	9	9	0.87
12725162--12725207	19	2.4	20	85	7	60	58	4	0	36	1.18
12725165--12725209	20	2.2	21	80	11	58	55	4	0	40	1.20
12725260--12725319	32	1.9	32	83	10	79	68	1	26	3	1.15
12725307--12725354	24	2.0	24	88	8	71	77	0	14	8	0.99
12725728--12725766	20	2.0	20	89	0	60	51	0	0	48	1.00
12731652--12731683	13	2.3	15	89	10	50	9	6	12	71	1.29
12733384--12733416	2	16.5	2	93	0	57	0	51	0	48	1.00
12734764--12734811	19	2.5	19	96	0	87	43	4	27	25	1.72
12741726--12741753	14	2.0	14	100	0	56	35	14	35	14	1.86
12745515--12745576	25	2.6	25	76	5	74	43	12	22	20	1.86
12749779--12749813	16	2.2	16	100	0	70	37	0	11	51	1.38
12750417--12750443	12	2.2	12	100	0	54	33	18	14	33	1.92
12750549--12750932	197	2.0	189	92	4	642	38	9	9	42	1.71
12750998--12751045	21	2.3	21	92	0	78	64	0	8	27	1.22
12751222--12751291	35	2.0	35	91	0	113	52	4	8	34	1.51
12751795--12751846	25	2.1	25	100	0	104	26	11	7	53	1.63
12758022--12758064	21	2.0	21	90	0	68	79	2	18	0	0.85
12758835--12758881	18	2.6	19	83	10	62	76	4	12	6	1.12
12759013--12759047	18	1.9	18	88	11	54	74	2	2	20	1.08
12759011--12759055	17	2.5	17	79	13	54	71	2	2	24	1.09
12759280--12759318	21	2.0	20	85	10	53	58	2	5	33	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12759487--12759521	18	1.9	18	88	11	54	57	2	0	40	1.14
12759533--12759567	17	2.1	17	88	0	52	85	5	8	0	0.73
12763842--12763885	17	2.5	17	85	3	52	20	2	2	75	1.03
12764792--12764828	16	2.3	16	90	0	56	10	8	2	78	1.06
12765116--12765163	14	3.3	14	85	11	53	22	2	10	64	1.35
12765591--12765629	17	2.2	18	86	4	53	48	10	5	35	1.59
12769019--12769059	3	13.7	3	89	0	64	39	0	29	31	1.57
12769020--12769059	12	3.3	12	96	0	71	40	0	27	32	1.57
12771920--12772374	59	7.7	58	73	13	320	36	11	5	46	1.63
12771919--12772382	60	7.8	57	70	17	282	37	10	5	46	1.63
12772384--12772441	29	2.1	26	87	9	80	77	0	3	18	0.91
12772382--12772442	24	2.6	22	79	18	70	78	0	3	18	0.88
12772378--12772442	10	6.5	10	72	18	55	78	0	3	18	0.88
12773327--12773406	22	3.7	22	81	8	85	63	2	5	28	1.28
12773329--12773416	21	4.2	21	78	11	74	62	2	4	30	1.27
12773355--12773420	11	5.8	12	71	18	52	60	0	4	34	1.17
12773363--12773514	6	21.0	7	68	20	59	62	1	5	30	1.25
12773363--12773514	15	10.5	14	65	24	59	62	1	5	30	1.25
12773532--12773595	7	8.9	7	84	6	74	78	1	1	18	0.92
12773529--12773601	8	8.8	8	70	19	51	78	1	2	17	0.95
12773533--12773601	15	4.7	15	83	3	77	78	1	2	17	0.95
12773519--12773601	29	2.8	28	75	15	78	77	1	2	19	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12773788--12773891	42	2.4	44	87	4	140	37	21	16	25	1.93
12773821--12773921	42	2.4	41	85	9	125	32	20	19	26	1.97
12774037--12774125	44	2.0	44	91	4	144	42	15	13	28	1.85
12775102--12775158	29	2.0	28	83	13	71	12	14	0	73	1.09
12785671--12785948	60	4.6	59	81	7	303	37	12	5	44	1.66
12785671--12785958	121	2.4	120	86	2	382	38	11	5	44	1.65
12785954--12786013	17	3.3	17	73	19	50	80	0	3	16	0.85
12785956--12786011	21	2.7	20	83	8	69	78	0	3	17	0.89
12785955--12786064	21	5.3	20	67	22	59	73	1	2	21	1.05
12786318--12786370	26	2.0	26	85	7	70	0	43	0	56	0.99
12786944--12787026	22	3.8	22	76	19	75	61	7	4	26	1.42
12786969--12787033	22	3.0	22	73	15	62	60	4	4	30	1.37
12787077--12787159	6	12.0	7	73	22	61	68	1	3	26	1.13
12787088--12787162	15	5.3	15	71	19	63	70	1	2	25	1.08
12787106--12787160	29	1.9	29	88	3	85	72	1	1	23	1.04
12789231--12789257	3	9.0	3	100	0	54	66	0	0	33	0.92
12789256--12789307	3	17.0	3	96	4	95	34	0	0	65	0.93
12789708--12789757	25	2.1	22	82	10	55	30	12	8	50	1.68
12797382--12797415	11	3.4	10	88	11	52	35	0	0	64	0.94
12804778--12804802	2	12.5	2	100	0	50	48	0	0	52	1.00
12806158--12806243	12	7.6	11	74	13	68	29	2	6	61	1.34
12806158--12806237	6	13.8	6	70	16	53	28	2	7	61	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12806276--12806354	35	2.2	37	84	6	99	75	3	17	2	1.06
12807259--12807308	14	3.8	13	80	12	57	18	0	2	80	0.82
12807259--12807318	28	2.2	27	82	14	70	18	0	1	80	0.80
12807265--12807319	20	2.6	21	88	5	76	18	0	3	78	0.90
12807404--12807457	24	2.2	24	90	6	83	31	3	11	53	1.53
12807392--12807437	19	2.4	19	85	3	56	30	4	10	54	1.55
12807465--12807518	24	2.2	25	80	3	65	35	7	7	50	1.59
12807638--12807688	19	2.6	19	90	3	75	31	5	11	50	1.62
12812512--12812536	11	2.3	11	100	0	50	84	0	8	8	0.79
12813600--12813631	16	2.0	16	100	0	64	43	6	6	43	1.54
12814104--12814143	18	2.3	18	91	4	64	40	10	15	35	1.80
12814115--12814148	18	1.9	18	88	5	52	35	14	11	38	1.83
12814134--12814167	17	2.0	17	88	0	50	26	20	20	32	1.97
12814163--12814237	18	4.1	19	79	8	75	34	14	12	38	1.83
12814268--12814320	28	1.9	28	85	11	74	28	11	9	50	1.69
12814730--12814789	17	3.5	17	80	10	70	25	0	8	66	1.19
12814731--12814790	23	2.7	23	82	7	70	25	0	8	66	1.19
12814821--12814871	24	2.2	23	89	6	77	68	5	11	13	1.37
12814843--12814889	21	2.2	21	77	7	51	68	8	10	12	1.40
12815942--12816071	24	5.5	24	72	18	78	31	5	8	54	1.53
12816035--12816104	21	3.5	21	75	13	67	31	2	11	54	1.51
12816219--12816273	19	2.8	19	88	2	74	36	3	10	49	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12816702--12816753	20	2.6	19	81	6	50	46	0	3	50	1.20
12831336--12831475	61	2.3	61	79	11	137	39	4	1	55	1.29
12841566--12841606	22	1.9	22	90	5	66	73	0	2	24	0.96
12842625--12842649	2	12.5	2	100	0	50	52	0	0	48	1.00
12843930--12844008	27	3.3	23	72	16	72	17	8	2	70	1.24
12843929--12844032	19	5.5	18	67	16	50	16	6	2	74	1.16
12843915--12844037	39	3.3	36	76	13	106	15	6	3	74	1.15
12844005--12844034	13	2.3	13	94	0	51	10	0	3	86	0.67
12844963--12844997	18	1.9	18	88	11	54	5	14	0	80	0.89
12847552--12847599	21	2.3	21	83	16	64	81	2	8	8	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74