genome.fa.s212.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  61  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12065569--12065801	99	2.3	101	76	9	235	36	13	13	36	1.85
12065542--12065980	50	8.8	51	73	11	229	35	13	14	35	1.86
12065584--12065839	49	5.1	50	75	11	177	36	12	14	35	1.85
12065662--12065976	101	3.1	97	75	5	254	36	14	14	33	1.87
12066832--12066860	8	3.6	8	100	0	58	10	0	0	89	0.48
12072013--12072062	24	2.2	24	82	13	61	68	0	22	10	1.19
12074790--12075014	60	3.7	59	75	9	193	33	4	22	39	1.74
12075144--12075261	60	1.9	61	84	3	157	39	3	19	37	1.68
12075240--12075301	31	2.0	31	90	6	99	40	3	16	40	1.64
12076233--12076267	16	2.2	16	90	5	54	37	8	0	54	1.31
12076513--12076537	13	1.9	13	100	0	50	20	0	0	80	0.72
12079077--12079231	43	3.6	43	81	5	186	37	14	15	32	1.88
12079349--12079635	100	2.9	100	83	6	307	37	18	13	31	1.89
12079301--12079641	50	6.8	50	75	9	243	37	17	14	31	1.89
12079301--12079641	100	3.4	101	81	7	295	37	17	14	31	1.89
12086224--12086253	12	2.5	12	88	0	51	16	0	10	73	1.09
12087798--12087849	26	2.0	26	85	10	72	38	7	17	36	1.78
12087813--12088030	61	3.6	58	76	10	179	34	3	22	39	1.72
12088151--12088282	60	2.2	60	82	9	160	39	5	17	37	1.72
12088251--12088313	31	2.0	31	85	11	85	46	6	11	36	1.65
12090958--12090986	14	2.1	14	93	6	51	75	0	0	24	0.80
12092186--12092293	43	2.5	44	83	7	123	41	14	12	31	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12092404--12092821	51	8.3	50	76	10	343	38	15	13	32	1.87
12092450--12092814	50	7.3	51	77	10	247	38	15	13	32	1.86
12092421--12092814	100	3.9	100	77	10	324	38	15	14	30	1.88
12095163--12095206	21	2.2	20	83	4	52	63	11	6	18	1.48
12099378--12099635	103	2.6	104	78	5	255	43	9	8	38	1.68
12103425--12103487	19	3.3	19	70	16	51	9	4	3	82	0.92
12103426--12103485	30	1.9	31	83	12	79	10	5	3	81	0.95
12104503--12104546	20	2.3	19	96	4	79	47	0	0	52	1.00
12105575--12105610	18	2.0	18	100	0	72	38	5	22	33	1.77
12105838--12105933	29	3.2	30	81	12	110	47	3	8	40	1.49
12105848--12105968	29	4.2	28	81	9	111	55	3	5	35	1.40
12108374--12108507	60	2.2	61	78	5	155	36	2	20	40	1.68
12108476--12108538	31	2.0	31	90	6	101	41	3	17	38	1.65
12110201--12110236	16	2.3	15	90	4	54	16	2	2	77	1.00
12110461--12110493	17	2.0	16	94	5	57	24	0	3	72	0.98
12112329--12112412	44	1.9	44	85	2	116	41	21	10	26	1.85
12112346--12112497	42	3.5	43	78	9	114	40	17	13	28	1.87
12112570--12112988	100	4.2	101	78	7	291	38	15	12	33	1.85
12112720--12112980	50	5.2	49	75	8	213	39	14	13	31	1.85
12115927--12116098	99	1.8	90	82	10	218	41	9	9	38	1.72
12121488--12121521	2	17.5	2	93	6	61	50	0	50	0	1.00
12123295--12123387	46	2.0	46	100	0	186	47	12	4	35	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12125430--12125514	30	2.9	29	81	11	93	48	4	9	37	1.57
12125419--12125542	29	4.2	28	79	12	99	49	4	8	37	1.53
12125430--12125542	30	3.9	29	78	13	90	51	4	7	36	1.51
12133757--12133818	31	2.0	31	87	3	90	40	4	14	40	1.67
12144406--12144460	21	2.6	21	74	8	58	20	21	30	27	1.98
12146121--12146166	13	3.4	14	77	22	53	21	4	0	73	1.00
12146121--12146173	28	1.9	27	85	11	72	22	5	0	71	1.06
12147097--12147133	3	12.3	3	88	0	56	35	0	2	62	1.10
12147705--12148301	51	11.8	51	81	6	588	39	15	13	31	1.86
12147799--12148301	153	3.3	153	89	4	702	39	15	13	31	1.87
12147705--12148301	100	5.9	101	82	6	577	39	15	13	31	1.86
12149145--12149184	18	2.2	18	95	0	71	10	7	0	82	0.84
12150733--12150773	21	2.0	21	90	4	66	60	12	4	21	1.50
12153573--12153647	39	1.9	39	91	0	123	41	24	12	22	1.87
12155698--12155735	16	2.4	16	86	8	51	26	10	5	57	1.53
12157446--12157474	10	2.7	11	94	5	51	72	0	24	3	1.00
12159298--12159332	16	2.2	16	94	0	61	17	0	8	74	1.06
12159303--12159344	4	10.8	4	80	14	52	21	0	4	73	1.01
12159294--12159344	20	2.6	19	85	11	68	19	0	5	74	1.02
12160331--12160392	20	3.0	20	85	2	88	50	3	1	45	1.27
12161651--12161746	29	3.2	30	83	4	131	47	5	6	40	1.51
12167545--12167593	15	3.4	15	77	8	57	30	20	8	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12167554--12167609	28	2.0	28	85	0	76	33	21	8	35	1.85
12168352--12168438	42	2.0	42	82	4	102	35	10	12	41	1.77
12168495--12168623	18	7.4	17	70	14	66	29	18	10	41	1.85
12168477--12168611	35	3.9	35	73	9	105	29	17	10	42	1.83
12168626--12168687	18	3.4	18	86	8	81	27	12	9	50	1.72
12168679--12168783	36	2.9	36	69	12	97	30	12	8	48	1.71
12168751--12168801	17	2.9	17	82	2	57	31	11	7	49	1.68
12168898--12169002	22	4.9	22	67	6	56	36	7	11	44	1.69
12168898--12169014	21	5.5	21	70	8	85	35	7	11	44	1.70
12170006--12170232	94	2.4	93	80	7	237	42	9	10	37	1.72
12175023--12175099	21	3.9	21	72	16	74	29	22	12	35	1.91
12175042--12175083	16	2.7	15	79	13	57	26	23	14	35	1.93
12175754--12175783	10	3.0	10	95	0	51	56	3	10	30	1.48
12176644--12176720	21	3.9	21	68	22	67	35	12	20	31	1.91
12189170--12189212	20	2.0	20	86	8	59	16	4	4	74	1.16
12189672--12189717	3	15.3	3	100	0	92	67	0	0	32	0.91
12190570--12190601	3	10.7	3	100	0	64	34	0	0	65	0.93
12193221--12193285	34	1.9	34	84	9	89	67	3	3	26	1.20
12193268--12193292	13	1.9	13	100	0	50	56	4	0	40	1.18
12198170--12198354	91	2.1	88	80	9	207	46	7	6	40	1.57
12203256--12203291	2	18.0	2	100	0	72	50	0	0	50	1.00
12205723--12205807	41	2.0	44	82	13	106	43	4	7	44	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12206718--12206752	16	2.2	16	90	5	54	37	8	0	54	1.31
12210071--12210117	21	2.3	22	82	14	64	48	2	4	44	1.34
12213245--12213269	12	2.1	12	100	0	50	60	8	0	32	1.26
12217288--12217383	30	3.2	31	80	4	90	43	6	13	36	1.69
12217310--12217404	30	3.2	30	83	4	95	43	5	12	38	1.65
12218188--12218227	20	2.1	19	86	9	55	30	10	0	60	1.30
12220382--12220412	15	2.0	16	93	6	55	0	25	0	74	0.82
12222595--12222667	30	2.4	31	84	9	96	42	5	17	34	1.73
12222595--12222683	30	2.9	30	80	5	81	41	4	16	37	1.69
12224627--12224744	60	2.0	61	86	1	166	41	2	17	38	1.63
12226676--12226787	55	2.0	55	89	0	170	34	14	11	39	1.82
12233282--12233322	14	2.9	14	85	3	55	24	0	4	70	1.06
12233420--12233476	30	1.9	30	82	13	73	28	7	1	63	1.30
12233732--12233852	61	2.0	62	85	4	165	27	5	13	53	1.62
12239339--12239429	30	3.0	31	75	15	91	39	4	20	35	1.73
12241399--12241525	60	2.1	61	85	2	166	40	3	17	39	1.65
12243462--12243573	55	2.0	55	96	0	206	33	14	12	39	1.83
12250511--12250631	61	2.0	62	85	4	165	27	5	13	53	1.62
12256115--12256205	30	3.0	31	75	15	91	39	4	20	35	1.73
12258179--12258305	60	2.1	61	86	2	175	40	2	17	39	1.62
12260235--12260410	55	3.0	55	83	13	235	33	13	13	39	1.83
12260248--12260376	64	2.0	64	95	0	231	31	12	14	41	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12273626--12273655	15	2.0	15	93	0	51	43	6	0	50	1.28
12276799--12276825	5	5.4	5	100	0	54	81	0	18	0	0.69
12278077--12278194	60	2.0	61	86	1	166	43	2	16	38	1.61
12279519--12279558	15	2.9	14	85	7	55	25	0	5	70	1.08
12279650--12279712	16	3.9	16	72	19	60	33	6	0	60	1.22
12279680--12279712	15	2.3	15	89	5	50	30	0	0	69	0.88
12280244--12280381	68	2.0	68	98	0	267	32	10	24	31	1.90
12286870--12286930	27	2.3	27	97	0	113	39	16	6	37	1.75
12293716--12294037	160	2.0	160	90	1	511	40	12	9	36	1.76
12316483--12316570	44	2.0	44	90	0	140	36	14	18	30	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74