genome.fa.s212.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  37  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7890857--7890919	27	2.3	26	81	10	72	25	0	25	49	1.51
7890790--7890927	20	6.9	20	71	11	90	24	0	30	44	1.54
7892057--7892093	11	3.5	11	89	10	51	2	10	0	86	0.67
7892495--7892759	145	1.8	143	86	3	388	43	9	9	37	1.70
7892482--7892808	144	2.3	145	82	6	389	45	9	10	35	1.70
7892996--7893052	28	2.1	27	81	15	64	63	1	1	33	1.15
7904520--7904586	29	2.3	29	79	5	73	46	8	8	35	1.67
7904786--7904819	2	17.0	2	100	0	68	50	0	0	50	1.00
7912494--7912519	7	3.7	7	100	0	52	0	0	11	88	0.52
7918295--7918353	31	1.9	31	85	0	82	42	10	15	32	1.80
7920283--7920348	30	2.3	30	85	14	95	34	3	0	62	1.11
7920405--7920496	30	3.1	29	72	12	78	45	8	9	35	1.68
7922466--7922540	21	3.5	22	78	8	75	48	9	6	36	1.62
7922512--7922559	21	2.3	21	88	0	78	50	8	6	35	1.58
7922584--7922638	24	2.2	25	83	3	67	54	10	3	30	1.52
7922717--7922741	13	1.9	13	100	0	50	88	0	0	12	0.53
7922698--7922755	19	3.1	18	82	7	71	84	1	5	8	0.83
7923865--7923930	3	22.0	3	96	0	123	65	0	1	33	1.02
7924489--7924528	14	2.9	14	88	3	55	50	5	2	42	1.37
7925341--7925568	40	5.8	40	71	17	149	38	15	17	28	1.90
7925742--7925811	36	1.9	36	85	5	97	37	20	17	25	1.94
7929327--7929375	20	2.5	20	93	0	80	46	16	22	14	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7929973--7930007	17	2.1	16	89	5	52	22	2	11	62	1.41
7930797--7930839	19	2.1	20	83	12	52	53	0	16	30	1.43
7933985--7934113	3	43.3	3	74	14	90	25	3	1	69	1.11
7934040--7934111	13	5.0	14	70	26	53	27	1	0	70	0.95
7933980--7934113	53	2.5	53	76	11	139	25	2	1	70	1.10
7934578--7934620	22	2.0	22	86	13	63	69	0	30	0	0.88
7934578--7934619	20	2.0	20	86	13	59	69	0	30	0	0.89
7941579--7941611	12	2.8	12	95	0	57	81	0	15	3	0.80
7941580--7941686	16	6.9	15	74	16	69	78	0	10	10	1.01
7941577--7941678	22	4.9	21	71	19	79	78	0	9	10	1.02
7943117--7943385	89	3.1	87	82	8	284	24	11	18	44	1.83
7943113--7943385	44	6.3	43	83	7	306	24	11	19	44	1.83
7943274--7943409	41	3.3	40	83	6	157	25	12	22	40	1.88
7943397--7943593	44	4.5	43	79	4	207	22	15	20	41	1.90
7943416--7943589	86	2.0	88	86	5	246	22	14	20	41	1.89
7943784--7943898	3	39.3	3	74	14	71	22	2	3	71	1.14
7948779--7948813	17	2.1	16	89	5	52	22	2	11	62	1.41
7958459--7958527	21	3.1	22	78	12	70	23	2	2	71	1.14
7959008--7959034	3	9.0	3	100	0	54	66	0	0	33	0.92
7959048--7959082	17	2.0	18	88	5	54	77	11	0	11	1.00
7959063--7959092	12	2.5	12	94	0	51	70	10	0	20	1.16
7961908--7961947	21	1.9	21	84	0	53	27	30	35	7	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7966499--7966528	12	2.5	12	88	0	51	73	10	0	16	1.09
7966594--7967070	120	3.9	120	90	3	683	38	11	6	44	1.66
7967105--7967183	5	15.4	5	74	17	65	79	1	5	13	0.95
7967102--7967176	22	3.2	24	71	27	72	80	1	4	14	0.93
7967130--7967198	27	2.6	26	82	13	79	78	0	7	14	0.96
7968117--7968159	19	2.1	21	83	8	54	69	0	4	25	1.07
7968074--7968301	22	10.3	22	69	19	109	69	2	4	23	1.19
7968116--7968211	46	2.0	48	82	7	117	68	1	5	25	1.16
7968269--7968339	25	2.8	26	81	6	76	66	2	4	26	1.24
7968328--7968378	11	4.5	11	76	11	50	76	3	1	17	1.03
7968564--7968944	41	9.1	43	88	4	516	35	22	17	24	1.95
7968564--7968944	83	4.6	83	86	3	507	35	22	17	24	1.95
7968564--7968944	124	3.0	124	86	3	532	35	22	17	24	1.95
7970197--7970258	30	2.1	28	82	5	70	9	14	0	75	1.03
7970213--7970258	14	3.2	15	78	9	51	8	15	0	76	1.02
7974182--7974208	14	1.9	14	100	0	54	29	0	11	59	1.32
7974199--7974604	58	6.9	58	86	5	489	35	12	7	44	1.70
7974632--7974712	5	15.4	5	74	16	67	79	2	4	13	1.01
7974740--7974770	13	2.5	13	94	5	55	83	6	0	9	0.79
7975613--7975716	24	4.6	23	73	17	76	65	1	6	25	1.28
7975724--7975870	6	23.2	6	67	19	50	72	2	3	21	1.11
7975626--7975791	24	7.0	24	67	17	82	68	2	4	24	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7975759--7975829	25	2.8	26	81	6	76	66	2	4	26	1.24
7975760--7975843	25	3.3	25	78	8	73	67	3	3	25	1.22
7975832--7975888	20	2.8	20	89	5	87	77	7	1	14	1.06
7975818--7975870	11	4.9	11	81	11	65	77	3	0	18	0.92
7976052--7976105	19	2.9	18	75	20	58	22	11	14	51	1.73
7983423--7983463	19	2.2	19	86	8	57	46	17	14	21	1.84
7984343--7984377	16	2.2	16	89	0	52	37	14	17	31	1.89
7984805--7985046	22	10.9	22	72	11	181	36	14	9	39	1.79
7984808--7984983	47	3.8	47	77	10	152	37	12	10	39	1.77
7984805--7985040	43	5.3	43	73	12	156	36	15	9	38	1.79
7984899--7985093	21	8.8	21	69	15	90	37	13	9	38	1.78
7989639--7989686	24	2.0	24	87	4	69	35	8	4	52	1.51
7992821--7992931	53	2.1	53	80	6	127	29	14	27	28	1.95
8002968--8003009	22	2.0	21	85	4	57	71	2	0	26	0.98
8003632--8003688	3	19.0	3	100	0	114	66	0	0	33	0.92
8014806--8014892	41	2.1	41	91	0	138	20	11	20	47	1.81
8014986--8015585	39	15.3	39	74	7	455	25	11	20	42	1.85
8014985--8015514	78	6.8	78	83	6	597	25	11	20	42	1.85
8014987--8015512	157	3.4	157	89	2	738	25	11	20	42	1.85
8015015--8015585	78	7.3	78	80	7	561	25	10	20	43	1.84
8016153--8016195	19	2.3	19	84	8	52	16	0	9	74	1.06
8016126--8016191	25	2.6	25	78	7	62	15	3	9	72	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8016207--8016245	19	2.1	18	90	4	60	25	0	7	66	1.18
8029817--8029844	1	28.0	1	100	0	56	0	0	100	0	0.00
8032258--8032329	35	2.1	34	87	7	101	43	9	8	38	1.68
8034508--8034559	13	4.2	13	75	9	54	51	1	0	46	1.12
8035383--8035464	27	2.9	28	82	15	89	51	0	2	46	1.14
8035375--8035464	31	3.0	29	81	15	96	52	0	2	45	1.13
8035375--8035435	21	3.0	20	72	20	56	57	0	0	42	0.98
8038739--8038786	2	24.0	2	95	0	78	50	4	0	45	1.21
8038883--8038987	3	34.7	3	76	17	85	28	2	0	67	1.11
8038881--8038995	24	4.7	23	80	15	117	27	3	0	67	1.12
8038880--8038995	49	2.4	50	89	4	184	28	3	0	67	1.13
8047415--8047459	22	2.0	22	100	0	90	42	13	8	35	1.75
8050138--8050300	42	3.8	40	73	13	121	26	14	19	39	1.90
8050185--8050403	44	5.0	44	76	5	167	24	15	18	42	1.88
8050619--8050746	3	41.3	3	77	16	111	28	3	1	66	1.16
8050619--8050752	24	5.5	25	81	10	154	29	2	1	66	1.15
8053648--8053678	14	2.2	14	94	0	53	51	0	3	45	1.17
8054724--8054810	38	2.2	39	80	11	90	57	2	0	40	1.11
8055922--8055947	13	2.0	13	100	0	52	30	7	0	61	1.24
8056030--8056055	2	13.0	2	100	0	52	50	0	0	50	1.00
8056693--8056727	2	18.0	2	94	5	63	48	0	0	51	1.00
8058282--8058308	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8058554--8058583	9	3.3	9	95	0	51	66	10	16	6	1.41
8059091--8059117	12	2.2	12	100	0	54	0	7	0	92	0.38
8059137--8059190	13	3.8	14	83	11	65	14	1	11	72	1.21
8059192--8059222	9	3.4	9	90	0	53	25	0	6	67	1.14
8059404--8059446	18	2.4	18	84	3	52	74	0	2	23	0.93
8071639--8071716	40	2.0	40	89	0	120	26	11	19	42	1.85
8071854--8072355	39	13.1	39	80	4	459	24	12	22	40	1.88
8072048--8072113	33	2.0	33	90	0	105	24	16	21	37	1.93
8071892--8072267	188	2.0	189	82	2	461	24	12	22	40	1.88
8071853--8072393	116	4.8	114	81	6	577	25	12	21	40	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74