genome.fa.s212.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  41  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8539586--8539680	22	4.3	22	72	10	86	34	6	3	55	1.41
8539558--8539648	44	2.1	44	85	0	119	36	7	3	52	1.46
8539697--8539760	22	3.0	22	86	6	87	37	6	6	50	1.53
8540306--8540339	13	2.5	14	85	4	52	67	5	0	26	1.13
8546307--8546364	22	2.6	23	81	5	66	36	6	3	53	1.45
8546676--8546734	11	5.4	11	80	8	66	35	3	5	55	1.38
8546804--8546985	44	4.2	44	76	10	153	36	8	5	48	1.57
8546654--8546922	22	12.2	22	69	4	103	34	9	4	50	1.56
8546933--8546975	22	2.0	22	85	0	59	34	4	9	51	1.55
8546941--8546982	22	1.9	22	85	0	57	40	2	7	50	1.43
8553116--8553160	20	2.3	19	85	11	56	24	0	8	66	1.20
8555814--8555941	51	2.5	53	82	10	158	46	1	3	49	1.27
8556088--8556128	21	2.0	20	85	4	55	39	17	12	31	1.86
8559590--8559616	12	2.2	12	100	0	54	37	18	22	22	1.95
8564606--8564915	156	2.0	156	96	0	575	39	14	17	29	1.89
8564762--8565266	253	2.0	253	95	0	902	39	13	16	31	1.87
8566191--8566220	5	5.8	5	92	7	51	16	0	0	83	0.65
8566191--8566221	16	1.9	16	100	0	62	16	0	0	83	0.64
8566190--8566220	11	2.9	11	95	4	55	16	0	0	83	0.64
8567080--8567170	41	2.2	41	92	0	146	24	41	19	14	1.88
8567364--8567409	19	2.4	18	83	16	58	36	0	8	54	1.32
8567471--8567517	20	2.3	21	88	3	69	65	4	0	29	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8572256--8572319	30	2.1	30	88	5	94	37	17	3	42	1.65
8572356--8572406	16	3.1	16	83	8	59	70	1	0	27	0.98
8583819--8584279	243	1.9	243	95	2	845	48	14	3	33	1.62
8585054--8585086	16	2.0	17	88	5	50	63	0	18	18	1.31
8585054--8585087	17	2.0	17	88	0	50	64	0	17	17	1.29
8585774--8585876	22	4.7	22	75	2	64	43	8	4	42	1.57
8585775--8585909	44	3.1	44	76	10	132	44	8	3	42	1.53
8585835--8585909	22	3.4	22	84	0	87	45	8	4	42	1.52
8585850--8585921	22	3.3	21	77	11	74	44	8	4	43	1.53
8585986--8586069	22	3.8	22	79	0	87	38	13	2	46	1.56
8585984--8586067	11	7.6	11	73	0	60	38	13	2	46	1.56
8586852--8586886	18	1.9	18	88	0	52	40	2	5	51	1.40
8587062--8587245	22	8.4	22	71	10	90	40	7	4	47	1.54
8587093--8587245	66	2.3	66	73	6	148	40	5	5	48	1.50
8587320--8587616	22	13.8	22	66	8	110	37	8	5	47	1.58
8587685--8587747	22	2.9	22	85	0	90	38	6	3	52	1.43
8587687--8587745	11	5.4	11	79	0	64	37	5	3	54	1.39
8587839--8587925	22	4.0	22	73	7	70	35	6	4	52	1.49
8587817--8587999	44	4.2	44	75	12	130	36	7	6	50	1.54
8587852--8588005	22	7.2	21	67	17	59	34	6	7	51	1.57
8590046--8590090	16	2.7	17	79	3	56	46	2	2	48	1.26
8591113--8591483	188	2.0	188	98	0	715	25	21	19	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8594804--8594848	20	2.3	19	85	11	56	24	0	8	66	1.20
8604547--8604578	14	2.2	15	94	5	57	21	6	3	68	1.26
8609881--8610039	57	2.8	57	80	7	171	37	11	6	44	1.67
8610097--8610150	11	4.7	12	73	17	51	81	0	5	12	0.85
8610097--8610148	16	3.1	16	78	10	59	82	0	5	11	0.82
8610167--8610207	7	6.0	7	91	8	59	70	0	0	29	0.87
8610577--8610636	30	2.0	31	86	3	86	45	20	11	23	1.83
8610949--8611042	21	4.5	20	70	20	59	70	1	5	23	1.14
8610970--8611112	41	3.4	41	79	12	146	65	1	5	27	1.24
8610977--8611086	20	5.3	20	78	10	114	64	0	6	28	1.24
8611002--8611240	4	59.8	4	69	19	119	68	2	2	26	1.17
8611014--8611235	14	16.2	13	70	16	103	68	2	2	26	1.16
8611080--8611126	21	2.2	21	85	7	60	63	4	2	29	1.25
8611034--8611226	38	5.2	38	76	10	143	67	3	2	26	1.18
8611076--8611189	59	1.9	60	80	8	135	66	2	1	28	1.15
8611027--8611240	31	7.2	29	68	16	118	68	2	2	25	1.17
8611166--8611241	7	10.0	7	80	16	64	75	3	1	19	1.04
8610951--8611241	20	13.1	21	70	17	94	69	2	3	25	1.17
8611420--8611651	42	5.5	42	88	3	315	38	22	16	22	1.92
8611423--8611676	82	3.0	80	80	7	251	39	21	16	22	1.92
8612685--8612715	16	1.9	16	100	0	62	6	9	0	83	0.79
8624207--8624538	57	5.8	57	86	8	449	38	12	6	42	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8624561--8624618	16	3.7	15	77	11	62	81	1	5	12	0.94
8624637--8624670	3	11.0	3	93	6	59	67	0	0	32	0.91
8625105--8625154	19	2.6	19	83	0	73	46	18	14	22	1.84
8625497--8625711	42	5.0	42	79	11	172	65	1	4	29	1.20
8625521--8625786	4	65.8	4	70	18	121	66	3	3	26	1.22
8625533--8625805	14	19.5	13	69	19	108	67	2	3	26	1.20
8625507--8625659	62	2.3	66	78	10	154	66	1	4	28	1.20
8625559--8625711	63	2.5	60	78	16	147	66	1	2	29	1.16
8625691--8625786	41	2.3	41	100	0	192	69	6	4	19	1.27
8625521--8625808	41	7.0	42	75	15	151	67	2	3	26	1.20
8626102--8626147	23	2.0	23	86	4	65	47	4	0	47	1.21
8626117--8626153	19	1.9	19	88	0	56	48	0	0	51	1.00
8626124--8626176	19	2.9	19	83	10	58	49	0	0	50	1.00
8629679--8629713	18	1.9	18	88	0	52	40	8	11	40	1.72
8630129--8630163	5	6.8	5	87	6	52	17	0	5	77	0.96
8630859--8630888	15	2.0	15	93	0	51	56	0	40	3	1.16
8636848--8637138	149	2.0	148	86	4	408	45	7	7	40	1.59
8637328--8637366	12	3.2	12	92	3	60	71	0	0	28	0.86
8641719--8641875	52	3.0	52	89	3	210	26	25	8	39	1.85
8660858--8660886	11	2.6	11	100	0	58	34	10	6	48	1.64
8660886--8660949	11	5.8	11	71	12	51	34	0	15	50	1.45
8666297--8666758	59	7.9	58	83	9	530	34	13	7	44	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8666297--8666758	118	3.9	117	86	6	605	34	13	7	44	1.71
8666771--8666923	10	15.0	10	66	21	59	71	2	6	18	1.19
8667757--8667851	32	3.0	32	80	6	95	69	3	7	20	1.26
8667766--8667837	25	2.8	25	79	10	83	69	2	8	19	1.27
8667891--8667945	3	18.7	3	96	3	103	67	0	0	32	0.91
8675207--8675288	16	4.7	18	69	24	50	25	1	2	70	1.06
8675207--8675255	25	2.0	25	88	8	73	24	0	2	73	0.94
8675200--8675271	7	9.9	7	80	14	74	25	0	1	73	0.91
8675203--8675375	7	24.0	7	72	18	69	28	2	2	66	1.16
8675200--8675371	29	5.9	29	68	21	85	27	2	2	67	1.15
8675273--8675384	23	5.1	23	73	17	78	32	3	1	62	1.23
8676250--8676298	26	2.0	23	88	11	71	18	2	0	79	0.83
8676393--8676609	60	3.7	57	77	11	222	43	6	12	37	1.69
8680522--8680569	14	3.5	14	77	13	55	81	0	14	4	0.84
8680523--8680570	24	1.9	24	87	8	69	81	0	12	6	0.87
8680537--8680587	17	3.2	16	75	8	50	82	0	11	5	0.83
8680520--8680577	24	2.4	24	80	11	64	77	0	15	6	0.97
8682015--8682096	43	1.9	42	87	7	121	39	7	14	39	1.74
8682419--8682606	42	4.6	41	83	5	220	26	16	21	36	1.94
8682389--8682685	41	7.1	40	78	11	258	25	16	20	37	1.93
8682418--8682685	83	3.2	83	84	7	312	25	16	20	36	1.94
8682698--8682749	1	52.0	1	80	0	59	90	5	0	3	0.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8682698--8682741	17	2.5	17	88	3	70	90	6	0	2	0.51
8682698--8682750	16	3.3	16	87	7	72	88	5	0	5	0.62
8682753--8683071	43	7.4	43	84	2	399	24	14	20	40	1.90
8683275--8683373	7	14.3	7	72	9	60	23	1	2	73	0.99
8683272--8683331	11	5.4	10	81	15	57	16	0	1	81	0.77
8683274--8683370	33	2.6	37	78	14	103	22	1	2	74	0.99
8683272--8683331	20	3.1	18	79	11	66	16	0	1	81	0.77
8683272--8683423	40	3.7	40	73	16	130	24	1	1	72	1.03
8683278--8683484	4	52.5	4	67	19	55	27	2	2	67	1.18
8683277--8683479	46	4.8	42	72	17	127	27	2	2	67	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74