genome.fa.s212.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  58  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11535077--11535122	23	2.0	23	83	12	58	52	4	4	39	1.41
11535187--11535230	18	2.4	19	80	3	54	61	4	0	34	1.16
11535435--11535488	20	2.7	20	94	0	90	37	18	14	29	1.91
11537220--11537278	22	2.7	22	78	0	64	25	10	25	38	1.87
11546635--11546700	21	3.1	21	71	0	60	30	18	25	25	1.98
11557224--11557283	31	1.9	31	93	0	102	28	16	11	43	1.83
11581170--11581244	34	2.5	27	74	25	87	57	13	0	29	1.37
11581183--11581265	34	2.4	34	97	0	157	53	14	0	32	1.42
11584486--11584514	14	2.0	15	93	6	51	75	0	6	17	1.01
11584597--11584629	16	2.0	17	88	5	50	75	6	6	12	1.16
11585176--11585227	3	17.3	3	100	0	104	67	0	0	32	0.91
11586033--11586093	19	3.2	19	75	13	63	18	3	6	72	1.21
11586007--11586057	22	2.3	23	83	10	61	5	5	9	78	1.08
11586122--11586264	46	3.1	46	81	7	130	39	11	8	40	1.72
11586155--11586265	47	2.4	46	85	7	136	40	9	9	40	1.70
11586198--11586301	46	2.2	47	83	5	122	40	13	8	37	1.75
11587143--11587197	22	2.5	22	78	0	65	16	16	30	36	1.91
11587185--11587314	52	2.5	51	77	5	143	39	18	14	27	1.90
11593656--11593801	78	1.9	78	89	0	229	45	10	6	38	1.63
11594316--11594384	31	2.2	32	94	2	122	69	10	5	14	1.34
11595924--11595974	22	2.2	23	86	6	68	19	7	0	72	1.08
11597708--11597755	20	2.6	18	78	15	53	56	8	8	27	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11601310--11601334	12	2.1	12	100	0	50	84	16	0	0	0.63
11604791--11604954	7	24.9	7	75	15	109	45	32	1	20	1.59
11604792--11604954	14	12.4	13	74	15	122	46	32	1	20	1.59
11604849--11604938	26	3.5	26	80	7	85	45	35	2	16	1.60
11604843--11604954	19	5.9	18	74	14	75	45	34	1	17	1.59
11604902--11604991	36	2.4	36	82	12	103	44	36	1	17	1.57
11615344--11615390	3	16.0	3	91	4	78	63	0	0	36	0.94
11619996--11620257	58	4.7	57	79	12	276	43	4	12	38	1.64
11620049--11620142	48	2.0	48	95	0	170	40	4	13	41	1.64
11623989--11624035	20	2.2	21	81	11	60	34	4	0	61	1.15
11624185--11624226	13	3.0	14	83	16	52	47	0	2	50	1.14
11624412--11624442	16	1.9	16	100	0	62	38	6	3	51	1.44
11625268--11625323	15	3.4	16	85	14	78	62	5	0	32	1.18
11625242--11625329	18	5.0	18	72	23	64	60	5	1	32	1.28
11625703--11625760	20	2.8	20	79	7	64	48	0	5	46	1.24
11631838--11631943	32	3.5	32	74	14	98	40	3	1	53	1.30
11631906--11632064	80	2.0	79	87	3	230	47	5	3	44	1.40
11633267--11633296	2	15.0	2	92	0	51	46	3	0	50	1.18
11638736--11638765	15	2.0	15	93	0	51	16	0	13	70	1.18
11642460--11642497	11	3.5	11	85	7	51	55	5	2	36	1.37
11642454--11642559	21	5.1	21	74	12	67	49	7	5	37	1.55
11642515--11642602	21	4.1	21	77	11	81	44	3	12	39	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11642543--11642614	23	3.2	23	82	7	78	45	1	13	38	1.53
11642563--11642626	23	2.9	21	81	11	65	45	1	10	42	1.49
11642715--11642778	22	2.9	23	73	13	62	50	6	7	35	1.57
11642760--11642820	22	2.8	21	78	9	59	54	3	4	37	1.39
11642789--11642840	22	2.4	22	87	6	70	44	1	11	42	1.51
11642852--11643123	22	12.5	22	67	12	78	49	6	8	35	1.58
11642933--11643034	44	2.4	43	81	3	125	51	11	3	32	1.56
11643063--11643151	44	2.0	45	82	2	108	55	4	6	33	1.47
11643189--11643239	22	2.3	22	79	0	57	54	11	3	29	1.54
11643224--11643275	22	2.4	21	83	6	59	48	3	7	40	1.50
11643323--11643504	22	8.4	21	71	12	95	46	8	7	37	1.61
11643323--11643512	86	2.2	89	78	8	203	46	8	6	38	1.61
11643788--11643861	22	3.4	22	88	0	76	50	2	8	39	1.46
11643799--11643865	22	3.0	22	91	0	98	49	1	10	38	1.46
11644112--11644162	22	2.3	22	83	12	61	54	9	9	25	1.63
11644280--11644442	22	7.5	22	76	6	107	49	10	4	36	1.57
11644272--11644420	44	3.4	44	74	5	122	48	11	4	36	1.58
11644364--11644470	22	5.0	22	78	15	82	44	5	9	40	1.60
11644791--11644928	21	6.6	21	72	8	102	47	10	5	36	1.61
11644995--11645031	3	12.3	3	100	0	74	32	0	0	67	0.91
11650520--11650560	17	2.3	18	80	20	59	56	0	0	43	0.99
11650525--11650560	17	2.2	17	95	5	65	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11653683--11653728	24	2.0	23	91	8	76	47	8	17	26	1.76
11655818--11655883	27	2.4	29	72	10	66	50	6	7	36	1.56
11656888--11656950	20	3.2	20	78	14	78	42	0	0	57	0.99
11658575--11658757	101	1.8	100	91	3	305	50	3	8	37	1.51
11662752--11662834	22	3.8	22	79	7	89	32	3	13	50	1.58
11662752--11662853	22	4.7	22	78	9	86	31	3	12	51	1.58
11662815--11662893	22	3.6	22	75	10	72	35	7	6	50	1.56
11662902--11662953	22	2.4	22	87	6	70	42	11	1	44	1.51
11663110--11663171	22	2.8	21	73	9	52	40	9	1	48	1.46
11663144--11663203	22	2.7	22	81	0	66	36	11	1	50	1.49
11663148--11663202	11	5.0	11	79	0	56	38	9	1	50	1.45
11663110--11663202	44	2.1	44	79	0	105	39	9	2	48	1.48
11663243--11663295	22	2.4	22	80	0	61	35	1	7	54	1.40
11663864--11664149	149	1.9	148	79	5	317	32	12	7	47	1.69
11666972--11667001	15	2.0	15	93	0	51	70	13	0	16	1.18
11672467--11672500	2	17.0	2	93	0	59	50	0	2	47	1.16
11673719--11673947	78	3.0	78	81	6	229	50	1	4	43	1.32
11676105--11676145	21	2.0	20	85	4	55	51	9	7	31	1.62
11679633--11679690	20	2.8	20	73	2	53	46	5	0	48	1.24
11680962--11680992	16	1.9	16	93	0	53	54	3	3	38	1.32
11681163--11681222	32	1.9	31	83	10	77	43	3	1	51	1.28
11681198--11681239	16	3.0	14	83	16	52	50	2	0	47	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11681400--11681433	10	3.4	10	87	0	50	64	0	0	35	0.94
11685529--11685868	59	5.7	58	82	7	432	35	12	7	44	1.70
11685529--11685868	120	2.9	119	86	4	490	35	12	7	44	1.70
11685916--11686028	4	28.0	4	71	19	67	74	5	0	19	1.06
11685885--11685952	30	2.3	29	82	10	75	76	2	5	14	1.09
11685880--11686041	34	4.8	33	71	14	102	74	4	3	18	1.12
11685934--11686007	18	4.4	17	73	13	73	74	6	0	18	1.04
11685916--11686041	16	7.8	16	71	15	80	75	4	0	19	1.03
11686864--11686924	22	2.8	21	82	9	61	67	4	4	22	1.30
11687058--11687100	17	2.5	18	85	11	63	72	9	0	18	1.11
11687078--11687121	24	1.9	24	90	9	74	72	6	2	18	1.17
11694707--11694751	22	2.0	22	95	0	81	37	0	2	60	1.09
11705129--11705225	50	2.0	49	81	2	113	50	8	11	29	1.67
11705115--11705349	114	2.1	114	85	5	316	55	7	12	25	1.62
11705239--11705393	49	3.1	49	72	12	118	52	9	10	27	1.66
11709366--11709433	20	3.1	22	83	12	77	77	0	13	8	0.98
11709379--11709476	9	11.0	9	80	11	105	77	0	12	10	0.99
11709379--11709476	17	5.5	17	80	10	99	77	0	12	10	0.99
11709384--11709442	20	3.0	20	87	9	95	81	0	8	10	0.88
11709366--11709476	46	2.5	42	75	16	107	75	0	14	9	1.04
11709379--11709472	20	5.1	19	79	18	92	77	0	11	10	0.99
11711097--11711426	42	8.0	42	84	4	348	25	13	20	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11711097--11711426	83	4.0	83	82	3	378	25	13	20	41	1.88
11711096--11711426	125	2.7	126	81	4	370	25	13	20	41	1.88
11712409--11712463	24	2.2	26	78	18	62	49	3	5	41	1.43
11712569--11712778	57	3.8	56	80	9	231	56	7	11	24	1.59
11712580--11712818	53	4.4	53	78	11	220	53	8	12	25	1.67
11712580--11712802	105	2.1	109	85	9	307	55	8	11	25	1.62
11717375--11717418	21	2.1	21	91	8	72	22	11	0	65	1.24
11717871--11717900	15	2.1	14	93	6	51	50	16	0	33	1.46
11719240--11719289	16	3.0	17	94	5	93	40	6	0	54	1.25
11719443--11719484	17	2.5	17	96	0	75	57	0	0	42	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74