genome.fa.s212.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  46  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9445418--9445457	17	2.4	18	80	16	50	35	0	0	65	0.93
9445862--9445927	27	2.4	27	92	0	105	60	4	1	33	1.26
9446933--9447063	3	44.0	3	78	1	129	34	9	0	56	1.31
9457531--9457570	18	2.2	18	95	0	71	27	0	22	50	1.50
9460699--9460775	38	2.0	38	92	0	127	32	32	7	27	1.85
9467399--9467454	29	1.9	29	92	0	94	51	3	12	32	1.56
9467366--9467547	91	2.0	91	89	4	278	48	5	12	34	1.63
9470012--9470134	6	20.2	6	80	5	86	65	9	1	23	1.32
9470066--9470126	13	4.9	12	82	6	59	70	6	0	22	1.10
9470065--9470126	25	2.5	25	89	5	90	69	8	0	22	1.14
9470024--9470126	31	3.4	30	79	4	116	66	10	0	21	1.27
9470460--9470598	17	7.9	17	69	15	68	48	15	7	28	1.72
9470478--9470598	18	6.8	18	67	10	79	49	14	7	28	1.70
9470417--9470628	88	2.4	88	84	7	256	47	14	9	29	1.75
9470477--9470639	35	4.7	35	79	6	136	49	13	9	27	1.72
9470665--9470704	17	2.4	17	87	8	55	40	12	12	35	1.81
9470812--9471043	54	4.3	54	80	6	229	38	12	17	31	1.87
9470820--9471030	18	11.7	18	75	7	160	38	13	18	30	1.88
9470812--9471048	36	6.6	36	77	1	208	39	12	16	31	1.86
9471017--9471061	18	2.5	18	85	0	63	46	11	6	35	1.66
9471600--9471956	175	2.0	176	96	1	653	45	11	16	26	1.82
9472468--9472500	15	2.2	15	89	10	50	3	9	0	87	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9472468--9472511	21	2.2	20	87	4	61	4	11	0	84	0.77
9476200--9476229	16	1.9	16	93	6	53	0	20	0	80	0.72
9476197--9476252	14	4.2	13	76	14	51	3	21	0	75	0.96
9477477--9477600	51	2.5	51	78	1	142	29	11	12	47	1.75
9481140--9481178	13	3.2	12	86	13	53	46	0	0	53	1.00
9484878--9484963	42	2.0	42	97	0	163	38	13	5	41	1.69
9485005--9485044	17	2.3	18	84	16	50	45	7	2	45	1.45
9489642--9490034	101	3.9	99	82	10	431	38	10	8	42	1.70
9493919--9493966	25	1.9	25	87	8	71	31	0	0	68	0.90
9499830--9499895	27	2.4	27	79	0	78	37	34	3	24	1.71
9501775--9501834	25	2.5	24	86	7	86	23	23	13	40	1.90
9504215--9504252	18	2.1	18	85	9	51	23	10	28	36	1.88
9504582--9504615	17	2.1	17	88	5	52	32	14	0	52	1.42
9511709--9512045	96	3.5	95	75	12	273	48	4	5	42	1.44
9511609--9512090	193	2.5	187	77	12	405	51	3	4	40	1.41
9512808--9512856	4	12.2	4	91	0	80	46	24	4	24	1.69
9513947--9513997	10	4.9	10	75	15	50	27	11	3	56	1.52
9513947--9514007	31	2.0	31	84	12	81	27	13	3	55	1.53
9516002--9516044	16	2.8	15	82	6	59	34	0	4	60	1.17
9518772--9518806	3	11.7	3	100	0	70	34	0	0	65	0.93
9519015--9519063	25	2.0	25	95	0	89	38	0	14	46	1.44
9519838--9519887	21	2.3	20	80	12	55	12	2	6	80	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9519847--9519896	22	2.3	22	89	6	75	16	2	2	80	0.91
9519847--9519896	11	4.5	11	82	7	66	16	2	2	80	0.91
9525316--9525357	9	4.4	9	88	8	57	78	0	11	9	0.96
9526667--9526713	23	1.9	26	87	12	73	31	19	6	42	1.76
9526670--9526725	23	2.3	24	77	22	64	30	17	7	44	1.76
9527474--9527538	10	6.6	10	76	18	57	21	4	1	72	1.11
9527480--9527547	28	2.6	26	86	11	86	23	4	0	72	1.03
9528524--9528564	8	5.1	8	87	0	64	17	0	9	73	1.09
9528513--9528562	12	4.2	12	81	0	64	18	0	6	76	0.99
9528508--9528548	20	2.0	20	90	0	64	14	0	9	75	1.04
9530868--9530911	23	1.9	23	86	9	63	77	2	18	2	0.98
9536791--9536825	17	2.1	17	89	10	54	34	0	2	62	1.10
9538190--9538432	127	1.9	128	80	7	289	40	11	13	34	1.81
9538470--9538764	126	2.3	124	79	11	291	35	12	16	35	1.87
9538200--9538831	305	2.1	305	83	4	792	37	12	14	35	1.84
9538847--9538918	35	2.1	35	83	0	90	34	11	18	36	1.86
9542975--9543584	238	2.6	236	84	4	782	42	12	10	34	1.76
9543481--9543708	123	1.8	124	87	0	341	41	14	10	33	1.80
9543244--9543940	361	1.9	359	86	3	979	41	12	11	35	1.79
9548985--9549020	15	2.4	15	90	0	54	30	30	2	36	1.72
9554255--9554297	17	2.6	16	85	7	59	6	0	25	67	1.15
9559453--9559497	16	2.6	17	83	13	56	77	2	13	6	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9563109--9563187	28	2.6	32	76	21	96	34	1	12	51	1.48
9563122--9563180	28	2.1	28	100	0	118	33	0	13	52	1.41
9566892--9566924	17	1.9	17	88	11	50	27	9	3	60	1.42
9567122--9567782	333	2.0	333	88	4	976	41	9	6	41	1.64
9568072--9568118	13	3.7	13	82	5	60	25	6	0	68	1.13
9568139--9568171	12	2.8	12	86	4	50	60	0	0	39	0.97
9568601--9568641	20	2.0	21	85	4	57	34	2	0	63	1.08
9568759--9568823	25	2.6	25	78	7	60	40	15	7	36	1.76
9569101--9569150	4	12.5	4	83	8	57	20	4	4	72	1.18
9569894--9569927	16	2.2	15	89	5	50	17	2	0	79	0.86
9569993--9570185	59	3.3	59	76	7	178	48	6	8	36	1.61
9570000--9570288	114	2.5	112	79	6	292	49	6	9	34	1.60
9582238--9582287	4	12.8	4	87	8	68	24	0	2	74	0.93
9582239--9582306	35	1.9	35	84	0	91	29	0	2	67	1.05
9582354--9582641	61	4.7	61	83	3	348	48	5	6	39	1.51
9582473--9582522	16	2.9	17	91	5	75	52	2	0	46	1.12
9582354--9582637	123	2.3	123	89	3	425	49	5	5	39	1.49
9582604--9582638	16	2.1	17	89	5	54	48	0	0	51	1.00
9582354--9582955	123	5.1	120	77	12	403	47	5	9	38	1.59
9582441--9582956	57	8.7	56	76	14	344	45	5	10	38	1.60
9592954--9593036	19	4.3	18	72	10	58	78	0	12	9	0.97
9592965--9593009	10	4.4	10	84	13	56	75	0	15	8	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9593613--9593659	24	2.0	23	95	0	67	34	12	19	34	1.89
9593740--9593770	16	1.9	16	93	0	53	22	16	19	41	1.89
9594096--9594331	44	5.3	43	77	4	211	23	11	18	46	1.82
9594092--9594315	88	2.5	87	81	5	234	23	12	17	46	1.81
9595275--9595306	13	2.5	13	94	0	55	15	31	34	18	1.93
9595504--9595938	60	7.3	58	77	11	319	47	6	9	36	1.62
9595548--9595987	57	7.5	58	78	8	354	46	6	10	36	1.64
9596498--9596865	118	3.2	113	82	10	420	45	5	11	38	1.63
9596498--9596865	57	6.3	58	84	7	419	45	5	11	38	1.63
9596726--9596818	32	3.1	32	65	24	85	48	5	10	35	1.61
9595607--9597339	872	2.0	860	87	4	2456	38	10	14	36	1.81
9597659--9597870	43	5.0	42	78	9	189	26	12	17	43	1.84
9597653--9597870	85	2.6	83	80	6	240	27	11	17	43	1.84
9598905--9598975	12	5.3	13	77	16	58	29	4	1	64	1.20
9598918--9598952	3	11.7	3	93	0	61	31	2	0	65	1.07
9599030--9599447	60	7.1	58	83	7	483	51	4	8	35	1.51
9599054--9599447	116	3.4	116	85	5	510	51	4	9	35	1.54
9600076--9600279	111	1.8	110	82	7	261	43	15	3	37	1.65
9602852--9602908	9	6.3	9	75	6	53	57	1	1	38	1.19
9603099--9603129	12	2.7	11	90	9	53	38	3	0	58	1.15
9616577--9616609	13	2.5	14	85	14	52	39	0	3	57	1.14
9627988--9628017	15	1.9	16	93	6	53	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9631104--9631239	59	2.3	59	89	1	211	29	7	12	50	1.67
9631104--9631268	59	2.8	59	86	1	190	31	7	12	49	1.67
9631227--9631304	40	2.0	40	87	5	113	39	5	8	46	1.58
9635666--9635720	24	2.2	24	93	3	92	61	9	10	18	1.54
9640199--9640227	3	9.7	3	100	0	58	65	0	0	34	0.93
9640843--9640881	11	3.5	11	85	3	51	71	0	5	23	1.05
9641201--9641233	13	2.5	13	95	0	57	21	0	3	75	0.93
9645303--9645327	13	1.9	13	100	0	50	84	0	16	0	0.63
9645776--9645800	13	1.9	13	100	0	50	88	0	0	12	0.53
9647460--9647602	42	3.4	42	77	8	121	28	8	19	43	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74