genome.fa.s212.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  4  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
710874--710937	24	2.7	22	79	11	65	23	6	12	57	1.57
711096--711150	24	2.3	23	75	9	56	50	7	3	38	1.48
716596--716635	2	20.0	2	100	0	80	0	50	0	50	1.00
739927--739965	2	19.5	2	94	0	69	48	0	0	51	1.00
757216--757251	17	2.1	17	100	0	72	61	0	11	27	1.30
758235--758277	13	3.4	13	87	12	63	39	0	0	60	0.97
759505--759550	20	2.3	20	84	0	65	30	0	0	69	0.89
759510--759572	12	5.3	12	81	11	69	31	0	0	68	0.90
764517--764564	25	2.0	24	88	12	71	16	2	8	72	1.18
764936--764969	2	17.0	2	87	0	50	44	0	0	55	0.99
772894--772957	14	4.6	14	68	14	51	32	9	0	57	1.30
772887--772970	42	2.0	42	100	0	168	35	9	0	54	1.33
772903--772971	19	3.5	19	67	28	54	33	10	0	56	1.33
781648--781712	33	2.1	33	86	13	93	46	3	1	49	1.27
783479--783536	29	2.0	29	86	6	82	53	1	3	41	1.28
786408--786444	17	2.2	17	100	0	74	43	18	16	21	1.88
807993--808072	41	2.0	41	84	0	106	30	8	17	43	1.79
821193--821227	9	3.7	9	85	14	52	31	0	0	68	0.90
821193--821226	11	3.4	10	88	11	52	29	0	0	70	0.87
821672--821745	32	2.2	32	81	9	87	48	5	0	45	1.25
824439--824499	30	2.0	30	93	0	104	47	3	19	29	1.65
824965--825340	185	2.0	188	93	3	643	42	12	9	36	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
825694--825728	17	2.0	18	88	5	54	74	0	0	25	0.82
837205--837512	154	2.0	154	100	0	616	48	13	22	15	1.80
838831--838868	5	7.6	5	100	0	76	0	57	0	42	0.98
839286--839332	24	2.0	23	88	12	69	40	6	12	40	1.69
840376--840414	21	1.9	20	89	5	60	35	5	2	56	1.35
840663--840690	2	14.0	2	100	0	56	50	0	0	50	1.00
858661--859344	228	3.0	228	79	0	652	21	24	23	29	1.99
863913--863940	2	14.0	2	100	0	56	0	50	0	50	1.00
863940--863969	2	15.0	2	100	0	60	50	0	0	50	1.00
864833--864885	26	2.0	26	100	0	106	30	18	11	39	1.86
864942--864977	12	3.0	12	95	0	63	38	8	8	44	1.65
874421--874469	20	2.5	20	83	6	64	42	6	0	51	1.27
885562--885638	16	4.9	15	79	17	68	27	2	20	49	1.62
885574--885638	32	2.0	32	85	5	87	29	3	21	46	1.67
885496--885644	8	19.2	8	67	13	55	25	3	23	47	1.67
890277--890329	8	6.4	8	77	14	54	33	0	1	64	1.05
890272--890320	25	2.0	24	84	11	64	36	0	0	63	0.95
890282--890329	24	2.0	24	84	15	64	33	0	2	64	1.05
890510--890626	42	3.0	38	74	14	103	43	2	1	52	1.25
890773--890814	17	2.7	15	86	13	66	52	0	2	45	1.13
890916--890992	17	4.9	16	76	14	63	44	1	2	51	1.23
890892--891008	16	7.2	16	67	18	55	47	1	2	48	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
890986--891037	26	2.0	27	92	3	88	50	3	1	44	1.31
891164--891200	16	2.2	17	90	4	58	51	0	0	48	1.00
891308--891397	43	2.1	43	95	0	162	41	4	4	50	1.43
895191--895242	8	6.9	8	72	27	51	1	40	0	57	1.10
895276--895339	20	3.2	20	81	0	65	56	14	10	18	1.67
895815--895856	4	10.5	4	89	0	66	71	4	0	23	1.05
896069--896410	43	8.0	43	73	8	214	42	16	12	28	1.84
896619--896689	33	2.2	33	89	0	106	36	21	15	26	1.93
905069--905111	14	3.2	13	81	12	50	9	6	0	83	0.80
905072--905112	9	4.4	9	84	6	55	9	4	0	85	0.73
912358--912411	25	2.2	25	93	0	90	35	14	16	33	1.90
916128--916159	3	10.3	3	93	6	55	34	0	0	65	0.93
916373--916420	4	11.5	4	82	12	53	75	2	0	22	0.91
916372--916420	21	2.3	20	83	10	62	75	2	0	22	0.90
916370--916420	17	2.9	18	80	13	63	74	1	0	23	0.92
917227--917269	21	2.0	21	82	8	52	74	6	4	13	1.19
917237--917313	28	2.9	27	78	7	86	72	7	2	16	1.19
919859--919889	4	7.8	4	100	0	62	25	0	25	48	1.52
920219--920256	14	2.7	14	84	12	51	42	0	2	55	1.14
920419--920447	14	2.1	14	100	0	58	51	13	0	34	1.42
923214--923273	30	2.0	30	87	6	86	18	21	15	45	1.86
925811--925843	2	16.5	2	93	0	57	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
933794--933830	2	18.5	2	100	0	74	0	48	0	51	1.00
936055--936097	12	3.4	12	90	6	59	46	2	2	48	1.27
936155--936194	13	3.0	13	82	7	53	40	5	0	55	1.22
942934--942984	26	1.9	27	92	4	86	35	7	3	52	1.49
943313--943357	21	2.1	22	84	12	58	40	0	0	60	0.97
945949--945987	20	1.9	21	85	15	55	53	2	0	43	1.14
946638--946675	20	1.9	20	84	10	51	50	2	0	47	1.15
946889--946937	21	2.3	21	85	0	62	38	6	0	55	1.25
946901--946946	21	2.2	21	92	0	74	36	2	0	60	1.09
946930--946964	18	1.9	18	88	0	52	28	2	0	68	1.04
949220--949281	16	4.1	16	72	16	51	46	1	0	51	1.10
949487--949526	21	1.9	21	89	0	62	37	22	5	35	1.76
951115--951220	55	1.9	55	86	3	151	31	31	6	31	1.83
950547--952273	883	2.0	881	80	4	1985	34	20	8	35	1.84
954110--954152	17	2.6	16	78	7	50	13	23	2	60	1.45
970983--971017	2	17.5	2	100	0	70	0	48	0	51	1.00
975495--975538	21	2.1	21	95	0	79	34	20	9	36	1.84
1002803--1002861	14	4.8	11	77	18	55	54	3	0	42	1.17
1002892--1002923	14	2.3	14	94	0	55	28	0	0	71	0.86
1012433--1012477	22	2.0	23	91	4	74	28	33	8	28	1.87
1021207--1021236	15	2.0	15	93	0	51	76	0	3	20	0.92
1029664--1029744	40	2.0	40	97	0	153	37	12	13	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1030769--1030815	24	2.0	24	95	0	85	14	6	12	65	1.44
1033338--1033391	27	1.9	28	81	7	65	14	5	5	74	1.19
1033971--1034061	34	2.7	34	77	0	83	32	8	17	40	1.80
1034369--1034427	29	2.0	29	84	12	77	74	1	1	22	1.00
1034362--1034427	15	4.7	14	73	14	55	74	1	1	22	0.99
1035914--1035967	26	2.1	26	93	6	92	48	5	0	46	1.25
1036344--1036402	17	3.5	16	76	4	55	11	1	6	79	0.99
1036342--1036399	23	2.5	23	80	2	71	13	1	5	79	0.98
1037699--1037723	13	1.9	13	100	0	50	72	0	0	28	0.86
1038841--1038884	15	2.9	15	86	10	54	61	2	0	36	1.09
1038952--1038985	11	3.1	11	86	0	50	70	2	2	23	1.15
1042783--1042825	19	2.3	19	95	0	77	46	0	0	53	1.00
1042810--1042859	8	6.4	8	79	4	57	60	0	0	40	0.97
1047678--1047710	14	2.3	15	89	5	50	66	0	3	30	1.06
1048102--1048352	108	2.4	105	75	9	240	31	8	5	54	1.53
1053350--1053390	18	2.3	18	95	0	73	48	0	0	51	1.00
1053375--1053432	30	1.9	31	85	3	82	63	0	0	36	0.94
1062295--1062322	11	2.5	11	100	0	56	67	10	14	7	1.40
1062726--1062751	5	5.2	5	100	0	52	19	0	0	80	0.71
1089928--1089952	12	2.1	12	100	0	50	0	8	0	92	0.40
1089924--1089953	13	2.2	14	94	5	53	0	10	0	90	0.47
1092419--1092487	33	2.1	33	100	0	138	26	5	17	50	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1099032--1099081	18	2.8	19	79	8	52	38	0	2	60	1.09
1099210--1099271	31	2.0	30	84	12	81	54	8	1	35	1.39
1107569--1107604	16	2.2	17	85	14	58	44	0	2	52	1.15
1107621--1107678	20	2.9	19	73	19	55	51	6	1	39	1.39
1107892--1107948	24	2.3	26	79	14	66	35	0	1	63	1.05
1107892--1107947	25	2.2	25	81	12	62	35	0	1	62	1.06
1109553--1109581	2	14.5	2	100	0	58	48	0	0	51	1.00
1114001--1114044	17	2.5	18	77	7	54	0	36	0	63	0.95
1115062--1115325	108	2.4	108	82	5	327	37	17	11	34	1.85
1115401--1115675	24	11.5	24	86	1	345	38	17	4	40	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74