genome.fa.s212.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  17  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4429829--4429946	16	7.0	16	70	16	69	53	0	1	44	1.16
4429959--4430073	18	7.2	17	69	25	90	40	0	1	56	1.15
4429959--4430073	45	2.5	45	83	11	126	40	0	1	56	1.15
4430637--4430662	13	2.0	13	100	0	52	76	0	7	15	0.99
4431133--4431170	20	1.9	19	89	5	58	63	10	0	26	1.27
4431146--4431199	27	1.9	28	85	7	74	57	7	0	35	1.27
4431525--4431560	14	2.5	15	90	4	56	13	5	8	72	1.27
4436289--4436320	16	2.0	16	93	0	55	84	0	15	0	0.63
4438010--4438048	2	19.5	2	100	0	78	51	0	0	48	1.00
4450369--4450410	19	2.2	19	95	0	75	38	19	2	40	1.64
4455918--4456037	11	10.7	11	71	13	77	48	0	1	49	1.17
4455918--4455985	6	11.3	6	71	22	54	50	0	1	48	1.10
4455914--4456035	21	6.1	19	69	21	63	48	0	1	49	1.16
4455931--4456016	37	2.5	34	81	10	104	48	1	2	47	1.22
4455919--4456037	32	3.6	32	69	23	84	47	0	1	49	1.17
4456047--4456094	18	2.5	19	76	6	53	41	0	0	58	0.98
4456115--4456173	25	2.4	25	82	5	75	50	0	0	49	1.00
4456920--4456964	20	2.3	19	84	3	63	60	0	2	37	1.09
4456925--4456977	27	2.0	27	85	7	72	58	0	3	37	1.16
4466556--4466585	13	2.3	13	94	0	51	26	0	20	53	1.46
4466921--4466955	13	2.7	13	90	0	52	34	2	11	51	1.53
4468491--4468611	28	4.6	28	81	11	132	20	5	27	46	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4468555--4468611	12	4.7	12	86	4	78	21	8	28	42	1.82
4470257--4470301	21	2.1	21	84	8	56	31	2	4	62	1.27
4471062--4471140	26	3.0	26	98	0	149	32	7	10	49	1.65
4471820--4472060	125	1.9	128	81	9	298	35	13	11	39	1.81
4472142--4472177	14	2.7	14	91	8	58	52	22	0	25	1.47
4480561--4481316	201	3.8	200	79	7	716	43	11	11	34	1.76
4481559--4481585	12	2.2	12	100	0	54	22	7	7	62	1.46
4483726--4484183	119	3.9	114	81	10	462	43	7	12	36	1.71
4483728--4484183	57	7.8	58	80	9	466	42	7	12	37	1.71
4483728--4484164	233	1.9	234	83	7	573	42	7	12	37	1.71
4488127--4488221	18	5.3	19	70	24	55	77	0	13	8	0.97
4488137--4488211	31	2.4	31	80	10	82	80	0	12	8	0.92
4488748--4488786	20	2.0	19	85	5	51	48	2	23	25	1.63
4489947--4490098	42	3.7	41	79	5	164	25	12	20	42	1.87
4490207--4490241	11	3.3	11	92	4	54	82	0	0	17	0.66
4490355--4490446	43	2.1	43	82	4	105	26	15	17	41	1.88
4490391--4490556	88	1.9	88	85	5	228	36	11	14	37	1.82
4490459--4490661	103	2.0	104	88	1	302	39	11	15	32	1.84
4492948--4493359	61	6.8	60	80	6	415	42	7	12	36	1.72
4495383--4495416	6	5.7	6	100	0	68	35	0	14	50	1.44
4495374--4495414	18	2.3	18	91	0	64	34	4	14	46	1.66
4495383--4495423	18	2.3	18	91	0	64	36	2	12	48	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4498294--4498462	87	1.9	87	95	0	302	37	15	8	37	1.79
4499069--4500004	236	4.0	234	80	5	985	46	11	9	33	1.71
4502634--4502913	140	2.0	141	85	2	375	40	21	12	25	1.88
4508342--4508587	129	1.9	129	88	1	377	36	15	18	29	1.92
4509476--4509510	7	5.0	7	92	0	52	37	28	20	14	1.91
4509903--4509952	22	2.3	22	86	6	66	10	4	6	80	1.02
4511078--4511117	13	3.1	14	86	10	50	25	0	0	75	0.81
4511350--4511397	17	3.0	15	82	14	60	70	0	2	27	0.98
4511522--4511575	15	3.7	15	77	20	60	61	0	1	37	1.07
4511679--4511718	7	5.7	7	84	0	53	50	35	0	15	1.44
4514007--4514047	21	2.0	21	85	0	55	29	14	4	51	1.63
4516222--4516329	55	2.0	55	96	0	198	36	10	10	43	1.72
4520303--4520353	26	2.0	26	84	7	68	39	9	15	35	1.81
4520546--4520589	18	2.4	18	84	0	52	27	18	11	43	1.84
4520979--4521031	22	2.4	22	83	3	70	35	11	13	39	1.80
4520871--4521123	105	2.4	107	82	4	309	34	13	15	37	1.86
4521083--4521141	22	2.7	22	89	0	82	32	22	13	32	1.92
4521192--4521249	22	2.6	22	81	5	64	27	25	20	25	1.99
4521313--4521371	22	2.7	21	85	12	75	27	22	16	33	1.95
4523531--4523813	44	6.5	44	78	7	274	48	17	9	24	1.76
4524850--4524883	10	3.6	10	84	15	54	26	0	0	73	0.83
4527357--4527440	6	14.0	6	77	8	73	25	1	0	73	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4527427--4527474	20	2.3	20	82	10	53	16	8	2	72	1.18
4527390--4527507	34	3.6	32	76	15	98	22	6	0	70	1.16
4527425--4527494	17	4.2	16	82	10	88	18	8	1	71	1.19
4527896--4527979	11	7.5	12	76	18	83	16	5	0	77	0.96
4527895--4527989	17	5.6	16	80	13	93	16	5	0	77	0.94
4527895--4527989	6	17.8	5	80	19	88	16	5	0	77	0.94
4527912--4527993	16	5.1	16	72	19	64	15	6	0	78	0.95
4528014--4528279	56	4.6	57	79	9	247	41	7	12	39	1.70
4532186--4532233	11	4.5	11	84	2	62	81	0	12	6	0.87
4532195--4532269	13	5.8	12	73	17	53	80	0	14	5	0.89
4532196--4532269	22	3.4	20	78	12	67	79	0	14	5	0.90
4532209--4532251	18	2.3	19	92	4	70	83	0	16	0	0.64
4532196--4532269	8	10.1	7	71	17	53	79	0	14	5	0.90
4532198--4532267	18	3.7	18	71	25	54	80	0	14	5	0.89
4533394--4533440	22	2.1	22	84	7	60	44	6	19	29	1.75
4533616--4533696	42	1.9	42	85	9	112	39	9	14	35	1.80
4533987--4534421	41	10.5	42	83	5	469	25	16	21	36	1.94
4533987--4534448	83	5.6	82	81	6	463	25	16	21	35	1.95
4533987--4534659	42	16.1	41	80	8	420	25	16	21	37	1.93
4534356--4534704	167	2.1	171	85	5	478	25	16	20	37	1.93
4534356--4534704	83	4.1	83	83	5	398	25	16	20	37	1.93
4534409--4534708	42	7.0	43	81	9	176	24	16	20	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4534988--4535032	23	2.0	23	81	0	54	28	6	0	64	1.19
4535015--4535056	16	2.7	16	85	3	59	23	4	0	71	1.05
4535016--4535060	23	2.0	23	86	8	65	22	4	0	73	1.01
4535491--4535579	9	9.7	9	76	12	83	15	4	0	79	0.88
4535571--4535806	57	4.1	58	80	8	234	42	6	11	38	1.67
4535591--4535806	61	3.7	57	83	7	256	43	6	12	37	1.68
4540143--4540242	48	2.1	47	85	7	130	23	12	6	59	1.55
4540496--4540559	26	2.5	27	78	12	73	42	10	3	43	1.55
4540496--4540571	24	3.0	26	75	16	70	42	9	3	44	1.55
4542392--4542472	24	3.4	24	82	0	90	33	37	13	16	1.87
4550296--4550346	23	2.1	23	89	7	75	76	3	11	7	1.13
4550278--4550346	18	4.0	17	74	12	61	75	2	14	7	1.13
4551796--4551832	10	3.7	10	88	0	56	13	0	10	75	1.04
4552221--4552325	52	2.0	54	90	5	171	57	6	11	24	1.58
4552222--4552347	52	2.4	51	83	9	148	56	6	10	26	1.57
4556938--4556970	2	16.5	2	100	0	66	51	0	0	48	1.00
4557446--4557477	2	16.0	2	100	0	64	50	0	0	50	1.00
4558481--4558527	15	2.7	17	84	15	53	53	2	0	44	1.12
4558528--4558566	20	2.0	19	85	5	51	56	0	5	38	1.22
4560791--4560823	2	16.5	2	100	0	66	48	0	0	51	1.00
4561879--4561923	2	22.5	2	90	0	54	42	0	8	48	1.34
4570139--4570203	30	2.2	30	82	0	76	56	1	0	41	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4570183--4570223	20	2.0	20	86	13	57	65	0	0	34	0.93
4575906--4575945	20	2.0	20	85	14	55	52	0	5	42	1.23
4577662--4577705	19	2.3	20	84	11	65	63	4	0	31	1.14
4580200--4580241	16	2.5	17	80	11	50	52	0	0	47	1.00
4588180--4588241	27	2.4	26	84	12	76	51	1	1	45	1.20
4590009--4590051	22	2.0	22	90	0	68	44	9	11	34	1.73
4593747--4593804	25	2.3	25	87	0	80	32	15	31	20	1.94
4593769--4593829	26	2.4	25	83	8	70	40	14	27	16	1.88
4593874--4593922	25	2.0	25	88	8	73	57	6	16	20	1.60
4594065--4594108	22	2.0	22	90	0	70	43	11	11	34	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74