genome.fa.s212.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  62  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12320874--12320927	20	2.7	19	75	8	54	40	0	3	55	1.17
12322043--12322086	19	2.4	18	82	10	54	77	11	11	0	1.00
12322681--12322720	17	2.4	17	86	0	53	20	0	2	77	0.88
12323307--12323346	20	2.0	20	100	0	80	30	10	25	35	1.88
12323724--12323758	17	2.0	18	94	5	63	25	0	0	74	0.82
12323881--12323985	52	2.0	52	83	7	133	42	7	23	25	1.80
12324150--12324324	90	1.9	90	97	0	332	24	6	30	38	1.80
12328447--12328487	2	20.5	2	100	0	82	48	0	0	51	1.00
12333473--12333542	22	3.2	22	76	11	72	34	10	7	48	1.64
12333992--12334140	22	6.8	22	81	0	127	40	5	3	51	1.41
12333970--12334074	44	2.4	44	80	0	102	41	8	2	46	1.49
12334176--12334309	22	6.2	22	69	8	69	37	9	5	47	1.61
12334305--12334369	22	3.2	20	84	6	69	30	1	3	64	1.18
12334318--12334369	19	2.7	19	80	13	61	30	1	0	67	1.02
12334448--12334498	22	2.3	22	82	0	66	39	9	0	50	1.35
12334577--12334663	22	4.0	22	69	11	61	37	13	3	44	1.61
12334776--12334808	15	2.3	15	89	5	50	45	12	3	39	1.57
12336721--12336778	30	1.9	30	86	6	82	37	3	15	43	1.64
12337901--12337964	32	2.0	33	96	3	121	31	9	3	56	1.47
12339669--12339719	26	2.0	26	84	0	66	31	0	11	56	1.35
12344498--12344577	34	2.4	33	87	8	108	15	0	16	68	1.21
12346585--12346652	25	3.0	23	78	8	68	4	17	1	76	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12352094--12352140	14	3.4	14	82	8	51	74	2	2	21	1.03
12352187--12352224	12	3.1	12	88	7	58	26	2	7	63	1.35
12358537--12358584	24	2.0	24	92	8	80	81	0	16	2	0.79
12359065--12359140	14	5.6	14	72	20	63	76	0	17	6	0.99
12359054--12359141	28	3.3	25	72	21	72	77	1	15	5	1.02
12359053--12359137	15	5.7	15	69	13	50	76	1	16	5	1.04
12360011--12360123	22	5.1	22	77	8	97	37	20	16	25	1.93
12360407--12360555	33	4.5	33	80	6	124	35	19	11	33	1.88
12360372--12360555	65	2.8	65	78	4	156	36	17	11	34	1.86
12360432--12360617	32	5.7	33	80	3	182	39	16	12	31	1.85
12360370--12360616	98	2.5	97	79	6	257	39	16	11	32	1.84
12361758--12361790	17	1.9	17	93	0	57	75	0	6	18	1.00
12362031--12362111	38	2.1	38	83	0	99	50	20	6	22	1.70
12362340--12362396	30	1.9	30	85	0	78	45	0	1	52	1.11
12362369--12362421	21	2.6	21	94	5	92	49	0	0	50	1.00
12362769--12362806	7	5.4	7	87	9	51	73	0	10	15	1.09
12366906--12366957	20	2.6	20	87	0	77	50	9	9	30	1.67
12366951--12367034	20	4.2	20	80	4	91	44	14	5	35	1.69
12370189--12370240	19	2.7	19	78	0	59	50	0	0	50	1.00
12371452--12371587	53	2.6	53	75	5	141	38	6	5	48	1.54
12371557--12371660	54	1.9	54	80	3	120	36	11	2	49	1.54
12371647--12371684	16	2.3	17	81	9	51	26	10	5	57	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12373136--12373173	12	3.2	12	85	11	51	47	2	0	50	1.15
12374733--12374790	29	2.0	30	83	10	75	58	5	1	34	1.30
12375041--12375147	53	2.0	53	90	0	169	41	5	2	50	1.40
12380695--12380857	81	2.0	81	98	0	317	28	12	16	42	1.84
12390386--12390411	2	13.0	2	100	0	52	50	0	0	50	1.00
12396050--12396078	15	2.0	15	93	6	51	34	6	17	41	1.76
12402083--12402158	39	1.9	40	82	12	95	36	21	7	34	1.82
12403387--12403902	160	3.2	160	80	4	522	32	8	17	42	1.79
12403387--12403987	158	3.8	156	78	7	509	33	7	17	41	1.78
12404938--12404985	15	3.2	15	79	5	53	39	6	14	39	1.71
12406088--12406127	20	2.0	20	85	9	55	47	0	2	50	1.14
12406475--12406511	19	1.9	19	88	0	56	59	2	13	24	1.47
12411725--12411769	3	15.0	3	100	0	90	33	0	0	66	0.92
12414508--12414542	16	2.2	16	89	0	52	42	8	14	34	1.76
12421715--12421764	17	2.8	17	90	6	73	40	6	4	50	1.46
12422358--12422383	11	2.4	11	100	0	52	76	7	0	15	0.99
12422337--12422389	18	2.8	19	77	13	56	73	3	3	18	1.14
12422376--12422400	11	2.3	11	100	0	50	84	0	0	16	0.63
12423193--12423284	3	32.0	3	80	8	57	59	0	11	28	1.33
12423620--12423730	37	3.0	37	77	7	109	43	15	23	18	1.87
12423914--12424271	121	3.0	120	77	6	382	46	13	20	19	1.84
12431031--12431099	3	24.0	3	91	8	117	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12431040--12431276	18	12.7	19	69	22	87	52	6	1	39	1.37
12432305--12432401	48	2.0	48	84	4	124	24	30	9	35	1.87
12432054--12434399	870	2.7	868	80	4	2588	34	23	8	33	1.85
12434537--12434580	2	22.0	2	85	0	52	45	4	2	47	1.35
12440142--12440423	141	2.0	141	95	0	510	32	15	12	39	1.86
12441109--12441162	27	2.1	25	89	6	81	9	18	38	33	1.83
12442157--12442202	16	2.8	16	86	3	65	4	4	6	84	0.85
12442369--12443083	147	4.9	144	90	3	965	31	24	12	30	1.93
12442369--12443083	48	14.7	48	86	6	888	31	24	12	30	1.93
12442369--12443083	195	3.7	191	87	5	981	31	24	12	30	1.93
12451439--12451481	18	2.4	18	80	3	52	51	0	0	48	1.00
12451738--12452018	140	2.0	141	95	0	501	33	16	12	38	1.85
12453723--12453757	5	7.0	5	93	0	52	0	0	14	85	0.59
12453703--12453757	28	2.1	27	86	10	78	1	1	12	83	0.80
12454528--12454560	2	16.5	2	100	0	66	48	0	0	51	1.00
12457681--12457737	16	3.7	16	69	9	55	43	36	1	17	1.60
12457719--12457803	29	2.8	29	71	8	73	54	27	1	17	1.51
12459606--12459643	17	2.2	17	86	9	51	21	7	0	71	1.11
12463799--12463829	16	1.9	16	93	0	53	48	3	25	22	1.66
12470671--12470765	35	2.8	34	75	9	95	17	14	12	54	1.70
12470934--12471169	35	6.7	35	75	7	111	22	21	9	46	1.79
12471012--12471228	106	2.0	106	82	5	260	23	22	8	46	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12470969--12471169	71	2.9	72	78	6	216	23	21	7	46	1.78
12471145--12471222	36	2.2	36	81	2	86	21	17	8	51	1.73
12471349--12471481	71	1.9	67	83	6	167	21	18	12	48	1.80
12471634--12471821	69	2.7	67	78	2	196	21	19	11	47	1.81
12471767--12472110	35	9.9	35	74	7	173	21	20	9	49	1.76
12471767--12471957	105	1.8	107	82	2	251	21	19	7	51	1.72
12471878--12472143	69	3.8	69	78	6	261	19	19	10	49	1.77
12471914--12472179	138	1.9	138	83	6	342	19	20	11	48	1.80
12472148--12472216	34	2.0	34	83	5	86	18	24	14	42	1.88
12472325--12472439	34	3.4	34	72	6	97	17	20	10	52	1.73
12472172--12472486	103	3.1	102	76	7	262	20	20	9	49	1.77
12472326--12472476	68	2.2	68	80	4	162	19	20	8	51	1.72
12473826--12473864	20	1.9	21	89	5	62	20	0	5	74	1.01
12474092--12474117	3	8.7	3	100	0	52	69	0	0	30	0.89
12474120--12474153	16	2.1	17	88	5	52	70	5	2	20	1.21
12474249--12474304	18	3.2	17	73	16	51	73	3	3	19	1.13
12474536--12474573	16	2.4	16	86	8	51	55	21	0	23	1.44
12476953--12476992	14	2.7	15	84	3	55	65	2	0	32	1.06
12476983--12477028	20	2.2	21	84	3	58	60	15	2	21	1.45
12481056--12481101	24	1.9	24	86	0	65	63	2	10	23	1.38
12480857--12481128	136	2.0	136	94	0	483	49	9	6	34	1.62
12482216--12482641	207	2.0	209	91	3	685	46	14	8	30	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12484863--12484907	23	2.0	23	90	0	72	33	22	13	31	1.92
12487383--12487487	52	2.0	52	83	3	131	47	9	16	26	1.77
12488276--12488318	11	3.9	11	85	11	61	25	0	23	51	1.49
12488277--12488331	22	2.5	22	91	2	85	23	0	23	52	1.47
12490256--12490309	15	3.6	14	79	20	65	74	1	0	24	0.92
12490711--12490843	37	3.5	37	69	5	95	65	15	8	11	1.46
12492037--12492096	3	20.0	3	96	0	111	65	1	0	33	1.03
12492302--12492385	14	6.2	14	71	8	66	52	20	3	23	1.62
12492304--12492393	26	3.4	27	84	4	112	51	21	5	22	1.68
12492324--12492372	12	3.8	12	79	12	53	53	20	4	22	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74