genome.fa.s212.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  39  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8200059--8200192	63	2.1	65	78	9	141	44	14	12	28	1.82
8200122--8200307	33	5.7	33	68	10	96	41	17	15	25	1.88
8200079--8200336	64	4.1	63	77	8	236	42	17	13	26	1.86
8200079--8200336	127	2.0	126	82	3	311	42	17	13	26	1.86
8202148--8202199	13	4.0	13	85	12	63	36	3	1	57	1.28
8202829--8202875	24	2.0	24	91	0	76	34	0	2	63	1.06
8202825--8202882	21	2.7	21	76	10	57	36	0	1	62	1.06
8202970--8203003	16	2.2	15	89	5	50	29	0	0	70	0.87
8203326--8203354	3	9.7	3	100	0	58	31	0	0	68	0.89
8206089--8206615	144	3.7	143	78	8	455	32	11	13	42	1.80
8213217--8213279	26	2.4	26	81	0	72	34	12	25	26	1.92
8213443--8213486	20	2.2	20	88	8	63	61	6	4	27	1.41
8216122--8216171	20	2.5	20	77	6	57	68	2	2	28	1.12
8219014--8219050	15	2.4	16	90	4	58	16	10	0	72	1.10
8223752--8223835	14	5.7	14	70	10	60	19	0	27	53	1.45
8223700--8224036	30	11.6	30	75	10	183	19	0	30	48	1.54
8223855--8224008	56	2.7	56	78	13	163	18	0	34	46	1.50
8223901--8224008	56	1.9	56	88	5	164	18	0	33	48	1.49
8223990--8224043	14	3.8	14	79	18	58	20	0	20	59	1.38
8223988--8224134	15	10.0	15	68	17	60	26	0	20	52	1.51
8224376--8224416	21	2.0	21	90	0	64	29	0	4	65	1.13
8225665--8225756	36	2.6	36	80	0	112	45	17	17	19	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8225764--8226078	109	2.9	109	81	7	309	39	16	19	24	1.91
8225975--8226166	88	2.2	88	83	3	244	40	18	17	23	1.91
8226151--8226217	22	3.0	23	82	6	84	29	17	23	28	1.97
8226063--8226452	132	3.0	132	83	5	457	36	17	20	25	1.94
8226311--8226671	110	3.3	110	80	4	415	37	15	21	25	1.93
8226635--8226694	22	2.7	23	75	12	63	28	16	25	30	1.97
8226555--8226920	132	2.8	131	85	3	468	37	17	21	24	1.94
8226774--8226826	22	2.4	22	87	0	70	32	16	24	26	1.97
8227570--8227655	41	2.1	41	82	4	102	31	17	22	29	1.96
8229095--8229145	16	3.4	16	80	17	56	7	3	3	84	0.86
8229095--8229145	7	6.9	7	81	16	50	7	3	3	84	0.86
8236640--8236673	9	3.9	9	96	3	61	35	11	0	52	1.38
8238905--8239258	187	1.9	185	83	6	457	35	10	7	47	1.66
8239238--8239264	8	3.4	8	100	0	54	11	0	0	88	0.50
8239237--8239273	14	2.7	14	80	19	51	16	0	0	83	0.64
8239555--8239593	19	2.1	19	90	9	62	2	20	17	58	1.50
8240066--8240310	41	6.0	41	85	3	325	41	15	19	24	1.90
8240066--8240340	41	6.8	41	84	4	305	41	15	18	24	1.89
8240066--8240310	83	3.0	82	86	3	334	41	15	19	24	1.90
8241347--8241392	12	4.0	11	80	8	56	13	13	0	73	1.09
8255966--8255995	13	2.3	13	100	0	60	66	10	0	23	1.21
8256035--8256121	43	2.0	43	88	4	131	43	8	5	42	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8257023--8257086	29	2.2	29	78	10	69	28	18	20	32	1.96
8260368--8260433	17	3.9	16	80	9	69	80	12	4	3	0.98
8260368--8260414	16	2.8	17	87	6	69	85	8	4	2	0.81
8260625--8260663	17	2.4	16	84	16	53	84	2	12	0	0.72
8260783--8260807	10	2.5	10	100	0	50	64	28	0	8	1.22
8261942--8261999	16	3.6	16	79	9	64	46	27	6	18	1.75
8262128--8262411	141	2.0	142	95	1	516	39	12	15	32	1.84
8268023--8268362	186	1.8	188	84	6	467	37	11	7	44	1.69
8268644--8268791	73	2.0	76	90	4	239	10	27	14	47	1.78
8269250--8269531	42	6.9	41	86	4	374	41	13	19	24	1.88
8269243--8269531	83	3.5	83	88	3	399	41	14	19	25	1.89
8269756--8269788	16	2.1	16	100	0	66	21	18	12	48	1.80
8270560--8270597	10	3.6	11	86	10	53	10	13	0	76	1.02
8281005--8281040	16	2.2	17	90	5	56	25	2	0	72	0.98
8285187--8285355	43	3.9	43	85	5	207	45	7	5	42	1.54
8285187--8285357	86	2.0	89	84	10	228	45	7	5	42	1.55
8286262--8286325	29	2.2	29	78	10	69	28	18	20	32	1.96
8286488--8286514	2	13.5	2	100	0	54	51	0	0	48	1.00
8287849--8287926	39	2.0	39	100	0	156	46	7	5	41	1.55
8291047--8291081	17	2.1	16	89	5	52	28	2	5	62	1.32
8291844--8291886	20	2.1	20	83	12	52	51	0	18	30	1.47
8292409--8292449	15	2.7	15	96	0	73	19	0	19	60	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8297825--8297859	17	2.1	16	89	5	52	22	2	11	62	1.41
8303416--8303470	28	2.0	28	92	0	92	29	12	3	54	1.55
8304664--8304693	10	3.1	10	95	4	53	36	0	0	63	0.95
8304655--8304694	9	4.7	9	80	20	50	32	0	0	67	0.91
8305982--8306029	2	24.0	2	86	0	69	43	4	2	50	1.33
8306392--8306438	23	2.0	23	83	0	58	14	14	27	42	1.86
8311930--8311959	14	2.1	15	93	6	53	46	0	0	53	1.00
8323176--8323200	12	2.1	12	100	0	50	28	32	16	24	1.96
8329667--8329698	2	16.5	2	93	6	57	50	0	0	50	1.00
8330231--8330262	2	16.0	2	100	0	64	50	0	0	50	1.00
8330624--8330700	40	1.9	40	89	5	120	36	2	24	36	1.70
8330816--8330864	22	2.2	22	96	0	89	10	22	6	61	1.50
8336102--8336128	3	9.0	3	100	0	54	33	0	0	66	0.92
8340570--8340843	123	2.3	122	81	7	319	50	7	7	34	1.59
8341060--8341130	30	2.3	30	83	7	90	40	11	4	43	1.60
8342392--8342423	2	16.0	2	100	0	64	50	0	0	50	1.00
8367583--8367631	26	2.0	24	84	8	62	51	8	0	40	1.32
8368979--8369018	11	3.6	11	82	0	53	25	0	22	52	1.47
8368978--8369020	22	2.0	22	95	0	77	25	0	23	51	1.49
8369045--8369201	52	3.0	52	83	1	181	40	7	25	26	1.82
8370284--8370351	33	2.1	33	85	0	91	29	27	13	29	1.94
8375040--8375514	158	3.0	159	91	3	748	39	17	14	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8375531--8375571	1	41.0	1	92	0	55	92	2	0	4	0.44
8375525--8375571	16	3.1	16	88	8	64	87	4	2	6	0.74
8375577--8375626	15	3.2	16	83	11	59	2	34	44	20	1.63
8375589--8375626	5	7.6	5	82	11	51	0	34	44	21	1.52
8375846--8375888	19	2.3	19	91	0	68	23	20	30	25	1.99
8375939--8376011	31	2.4	31	88	4	103	27	24	24	23	2.00
8376324--8376357	11	2.9	12	86	8	52	79	0	0	20	0.73
8376575--8376606	17	1.9	16	93	6	55	87	0	0	12	0.54
8376577--8376609	13	2.4	14	85	5	50	87	0	0	12	0.53
8376664--8376695	16	2.0	16	100	0	64	18	25	37	18	1.94
8376803--8376828	1	26.0	1	100	0	52	0	0	0	100	0.00
8376830--8377312	41	12.0	40	86	8	601	36	21	17	23	1.95
8376851--8377312	40	11.5	40	88	8	581	37	21	17	23	1.94
8376851--8377312	80	5.7	81	87	9	669	37	21	17	23	1.94
8378503--8378533	8	3.9	8	91	0	53	9	16	0	74	1.07
8378528--8378568	6	7.0	6	78	15	50	0	17	0	82	0.66
8378511--8378565	16	3.4	16	82	5	65	3	16	0	80	0.86
8378527--8378590	16	3.7	17	74	17	69	4	17	0	78	0.92
8378974--8378999	1	26.0	1	100	0	52	0	0	0	100	0.00
8382231--8382710	156	3.0	161	92	2	783	39	17	14	28	1.89
8382721--8382752	1	32.0	1	100	0	64	100	0	0	0	0.00
8383024--8383068	19	2.4	19	92	0	72	22	22	31	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8383130--8383202	31	2.4	31	90	4	112	27	24	26	21	2.00
8383518--8383550	11	2.9	12	86	13	52	78	0	0	21	0.75
8383845--8383903	20	3.0	20	94	0	100	22	28	30	18	1.97
8400137--8400605	242	1.9	245	96	2	872	49	13	3	33	1.61
8402105--8402319	22	9.8	22	70	10	100	42	10	4	42	1.58
8402114--8402250	44	3.1	43	80	6	125	45	9	2	42	1.51
8402316--8402374	22	2.7	22	83	0	82	40	15	1	42	1.57
8402314--8402374	11	5.5	11	72	0	50	40	14	1	42	1.56
8403020--8403070	22	2.3	22	83	6	59	31	3	11	52	1.56
8403396--8403579	22	8.4	22	69	12	92	40	8	4	46	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74