genome.fa.s212.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  67  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13257394--13257576	22	7.4	24	72	21	112	39	2	0	57	1.15
13257365--13257550	78	2.4	77	74	15	181	40	2	1	55	1.19
13257365--13257581	76	2.8	77	72	18	177	40	1	0	57	1.16
13258265--13258329	22	3.0	22	80	6	62	63	0	3	33	1.10
13259929--13259986	28	2.1	28	100	0	116	48	6	3	41	1.47
13260079--13260109	14	2.1	15	94	5	55	67	0	0	32	0.91
13260270--13260473	50	4.1	50	86	5	268	30	12	7	49	1.68
13260270--13260465	100	2.0	100	89	3	304	30	12	7	49	1.68
13261797--13261857	27	2.3	27	80	8	72	42	4	3	49	1.40
13262718--13262760	14	3.1	14	74	12	52	53	2	0	44	1.13
13264462--13264503	15	2.7	15	85	7	57	54	0	0	45	0.99
13264462--13264504	16	2.6	17	82	10	63	55	0	0	44	0.99
13264626--13264712	17	4.9	17	64	17	52	45	1	1	51	1.16
13264643--13264690	15	3.2	15	85	5	62	52	0	0	47	1.00
13264668--13264709	17	2.7	15	82	13	57	45	2	2	50	1.27
13264847--13264903	19	2.9	20	75	15	64	42	3	5	49	1.42
13264861--13264921	25	2.6	24	80	10	72	44	1	4	49	1.33
13264842--13264907	20	3.3	20	73	14	73	42	3	4	50	1.38
13265618--13265662	20	2.3	19	85	11	56	26	6	0	66	1.16
13265632--13265679	24	2.0	24	87	0	69	29	4	2	64	1.23
13265884--13265923	3	13.7	3	94	5	73	32	0	0	67	0.91
13277682--13277717	2	18.0	2	100	0	72	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13280453--13280488	17	2.1	17	94	0	63	38	16	8	36	1.79
13288916--13288953	15	2.5	15	87	8	51	36	0	7	55	1.29
13292751--13292775	5	5.0	5	100	0	50	80	0	20	0	0.72
13293339--13293531	100	1.9	101	90	1	307	38	7	11	42	1.70
13294318--13294391	32	2.4	31	81	2	76	60	10	2	25	1.43
13294362--13294394	17	1.9	17	93	0	57	57	12	0	30	1.35
13298302--13298341	19	2.2	19	90	4	64	62	7	0	30	1.23
13298302--13298341	9	4.3	9	84	6	53	62	7	0	30	1.23
13298329--13298367	20	1.9	21	85	15	55	43	2	2	51	1.29
13298379--13298441	32	1.9	34	83	6	85	65	3	4	26	1.28
13298467--13298505	18	2.2	18	85	0	51	69	2	5	23	1.21
13298659--13298738	30	2.8	28	76	12	83	32	2	3	61	1.27
13298763--13298833	19	3.8	19	75	7	74	35	2	5	56	1.38
13298906--13298945	20	2.0	21	85	5	55	22	2	7	67	1.28
13298933--13299009	28	2.8	25	72	18	64	36	3	2	57	1.31
13299096--13299141	24	1.9	24	86	0	65	23	0	4	71	1.03
13308366--13308450	42	2.0	42	97	0	161	35	4	22	37	1.75
13308442--13308500	30	2.0	30	89	0	91	50	1	20	27	1.57
13308453--13308515	30	2.1	30	84	0	81	47	6	22	23	1.74
13310442--13310475	2	17.0	2	100	0	68	50	0	0	50	1.00
13313107--13313140	18	1.9	18	88	5	52	26	0	23	50	1.50
13314391--13314429	4	9.8	4	100	0	78	25	0	23	51	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13316772--13316856	41	2.1	41	93	0	143	27	21	10	41	1.85
13320340--13320366	2	13.5	2	100	0	54	48	0	0	51	1.00
13328504--13328536	2	16.5	2	100	0	66	51	0	0	48	1.00
13336907--13336941	17	2.1	17	89	10	54	25	0	14	60	1.35
13339300--13339337	19	2.0	20	90	10	62	57	2	7	31	1.41
13343776--13344006	119	1.9	119	97	0	435	29	12	13	45	1.79
13350014--13350108	35	2.7	36	78	15	101	41	4	12	42	1.62
13350480--13350853	186	2.0	188	83	4	477	22	8	24	44	1.79
13352300--13352324	12	2.1	12	100	0	50	52	0	0	48	1.00
13354032--13354094	29	2.2	29	79	0	72	63	4	0	31	1.15
13354024--13354087	10	6.6	10	73	18	55	57	6	0	35	1.24
13354032--13354094	10	6.5	10	80	10	60	63	4	0	31	1.15
13354024--13354087	19	3.3	20	76	4	69	57	6	0	35	1.24
13354570--13354614	18	2.5	18	85	7	65	57	4	2	35	1.31
13354564--13354653	20	4.6	20	75	16	64	54	10	2	33	1.46
13354954--13355003	17	2.9	17	79	5	57	22	8	4	66	1.35
13354939--13355028	34	2.5	35	75	13	85	26	6	2	64	1.30
13355052--13355092	17	2.4	17	87	0	55	36	2	2	58	1.24
13355174--13355206	16	2.0	17	88	5	50	33	3	0	63	1.10
13357019--13357045	12	2.2	12	100	0	54	29	18	0	51	1.46
13357027--13357159	52	2.5	52	80	1	131	27	15	6	51	1.66
13357183--13357215	11	2.9	12	86	13	52	51	24	0	24	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13357630--13357680	16	3.3	15	83	8	66	39	1	5	52	1.37
13361355--13361398	3	14.3	3	95	4	79	31	0	0	68	0.90
13361353--13361406	25	2.2	25	90	6	83	31	0	1	66	1.02
13361480--13361512	2	16.5	2	93	0	57	51	0	0	48	1.00
13364380--13364445	31	2.2	30	86	2	87	56	3	4	36	1.35
13366073--13366342	84	3.2	84	82	3	335	35	20	12	31	1.90
13372973--13373028	21	2.6	22	83	11	71	50	0	0	50	1.00
13372974--13373028	24	2.4	22	88	11	76	49	0	0	50	1.00
13373017--13373051	18	1.9	18	88	0	52	62	0	0	37	0.95
13379033--13379086	28	2.0	27	81	3	63	33	3	3	59	1.33
13380297--13380334	18	2.1	18	85	9	51	7	0	23	68	1.16
13383522--13383569	24	2.0	24	91	0	78	22	14	10	52	1.72
13384668--13384702	13	2.7	13	100	0	70	37	0	5	57	1.23
13389918--13389951	13	2.6	13	90	0	50	14	0	5	79	0.91
13390697--13390932	121	1.9	123	92	3	397	25	15	11	48	1.78
13393741--13393975	116	2.0	117	83	6	298	23	9	28	38	1.86
13397882--13397909	3	9.3	3	100	0	56	67	0	0	32	0.91
13398414--13398446	12	2.8	12	90	4	50	12	0	3	84	0.72
13398519--13398577	8	7.0	8	76	16	57	45	0	1	52	1.10
13398520--13398601	8	9.9	9	70	29	51	42	0	1	56	1.07
13398521--13398571	18	2.8	18	82	8	68	43	0	1	54	1.11
13406479--13406515	8	4.6	8	86	0	56	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13406479--13406533	16	3.6	16	80	11	62	47	0	0	52	1.00
13406505--13406578	22	3.5	22	96	3	134	50	0	0	50	1.00
13407259--13407298	21	1.9	21	85	10	55	47	5	5	42	1.47
13407533--13407573	16	2.8	15	78	14	50	58	2	0	39	1.11
13407404--13407827	220	1.9	221	90	2	676	46	3	4	45	1.39
13407800--13407857	15	3.7	15	75	15	55	53	1	1	43	1.21
13411460--13411494	16	2.2	16	89	0	52	28	0	5	65	1.15
13415013--13415043	15	2.1	15	100	0	62	45	22	0	32	1.53
13421049--13421105	27	2.2	25	81	15	62	43	0	5	50	1.24
13421182--13421238	16	3.4	17	80	9	64	42	0	0	57	0.98
13422323--13422394	37	1.9	37	97	0	135	56	1	8	33	1.38
13422867--13422896	9	3.2	9	95	4	51	63	0	0	36	0.95
13422869--13422898	10	3.1	10	95	4	53	63	0	0	36	0.95
13431219--13431277	29	2.0	30	87	6	86	15	0	35	49	1.45
13431730--13431758	3	10.0	3	92	7	51	31	0	0	68	0.89
13432910--13432959	7	7.1	7	74	17	50	30	0	2	68	1.01
13432910--13432959	15	3.6	13	79	12	55	30	0	2	68	1.01
13445152--13445389	117	2.0	117	87	3	343	34	9	16	40	1.80
13446616--13446660	21	2.1	21	83	0	54	42	8	28	20	1.82
13448397--13448430	2	17.0	2	93	0	59	50	2	0	47	1.16
13449322--13449370	16	3.2	15	77	11	55	34	0	0	65	0.93
13449853--13449921	23	3.0	22	79	12	68	40	2	1	55	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13450070--13450108	15	2.4	16	87	8	53	23	0	5	71	1.05
13450198--13450249	26	2.0	25	92	3	86	28	9	9	51	1.66
13450786--13450890	47	2.3	47	86	6	144	34	2	7	55	1.43
13450767--13450941	24	7.8	23	73	18	129	33	4	9	53	1.53
13450940--13450985	22	2.2	20	88	11	65	28	4	10	56	1.53
13450899--13451161	55	4.8	55	85	3	345	30	6	10	53	1.60
13451000--13451042	23	1.9	23	95	4	79	32	6	9	51	1.61
13450899--13451156	110	2.4	108	90	2	392	30	5	10	53	1.57
13451050--13451111	20	3.0	20	79	6	70	27	4	9	58	1.50
13451053--13451097	21	2.1	21	87	4	63	22	4	11	62	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74