genome.fa.s212.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  59  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11719568--11719643	24	3.2	24	78	10	86	47	10	0	42	1.38
11719586--11719620	18	1.9	18	100	0	70	45	8	0	45	1.34
11719779--11719825	21	2.2	21	88	0	67	68	2	6	23	1.24
11719874--11719944	14	5.0	14	76	10	56	43	0	0	56	0.99
11719849--11719933	20	4.3	19	70	20	59	47	0	0	52	1.00
11719918--11719979	16	4.0	15	79	6	70	46	1	3	48	1.28
11719917--11719977	31	2.0	31	87	6	88	49	1	3	45	1.28
11719997--11720046	24	2.1	24	100	0	100	58	4	8	30	1.45
11720081--11720107	12	2.2	12	100	0	54	44	0	14	40	1.46
11720113--11720152	10	4.0	10	96	0	71	40	2	0	57	1.12
11720135--11720175	15	2.7	15	92	0	64	43	2	4	48	1.37
11720642--11720727	7	12.4	7	76	19	58	33	0	1	65	1.01
11720636--11720672	14	2.6	14	91	4	56	27	0	2	70	1.01
11720659--11720725	18	3.9	18	83	13	97	37	0	0	62	0.95
11720654--11720719	9	7.8	9	75	14	61	36	0	0	63	0.95
11720666--11720719	11	4.9	11	74	0	54	38	0	0	61	0.96
11720738--11720771	16	2.1	16	100	0	68	50	11	0	38	1.39
11724007--11724041	16	2.2	16	100	0	70	54	11	11	22	1.68
11728584--11728634	10	5.5	10	74	25	58	43	9	1	45	1.48
11728683--11728808	23	5.3	23	69	18	64	30	0	1	66	1.06
11728720--11728773	23	2.6	19	79	20	72	20	0	3	75	0.95
11728720--11728774	9	6.4	9	76	16	55	21	0	3	74	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11728720--11728794	5	15.0	5	71	18	50	25	0	2	72	0.98
11728741--11728789	18	2.7	18	79	17	57	26	0	2	71	0.97
11728733--11728803	23	3.2	23	86	6	92	28	1	1	69	1.06
11728756--11728822	25	2.8	24	82	8	66	32	1	1	64	1.12
11728682--11728877	8	25.2	8	67	19	62	33	1	3	62	1.20
11728803--11728869	15	4.5	15	96	1	109	34	2	5	56	1.39
11728900--11728949	19	2.7	19	90	9	77	42	2	0	56	1.11
11728919--11728990	25	2.7	27	73	16	71	48	0	0	51	1.00
11728999--11729071	32	2.3	32	85	4	94	45	0	5	49	1.25
11729025--11729085	13	5.2	13	74	25	73	39	0	6	54	1.27
11729038--11729081	19	2.4	19	92	3	72	40	0	4	54	1.21
11729019--11729082	32	2.0	32	100	0	128	40	0	6	53	1.26
11729091--11729138	8	6.1	8	79	11	55	43	0	2	54	1.12
11742196--11742271	21	3.9	21	68	19	56	44	0	0	55	0.99
11742271--11742310	13	3.2	13	82	17	57	67	0	0	32	0.91
11742902--11742980	18	4.3	18	71	6	61	59	1	1	37	1.14
11742904--11742984	19	4.3	20	69	12	57	60	1	1	37	1.13
11743303--11743349	14	3.3	14	77	14	51	68	0	0	31	0.90
11746480--11746517	1	38.0	1	100	0	76	100	0	0	0	0.00
11748036--11748081	2	23.0	2	82	8	58	45	2	4	47	1.34
11748215--11748242	2	14.0	2	100	0	56	50	0	0	50	1.00
11752857--11752957	41	2.5	42	76	14	102	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11752857--11752914	27	2.1	28	81	12	77	55	0	0	44	0.99
11752858--11752924	27	2.7	24	73	26	59	58	0	0	41	0.98
11754424--11754464	21	2.0	21	85	9	57	31	24	9	34	1.88
11758786--11758821	18	2.0	18	89	10	56	41	2	0	55	1.14
11759088--11759132	19	2.2	21	80	7	58	51	6	0	42	1.28
11765611--11765695	34	2.5	33	75	11	82	48	8	7	36	1.60
11768037--11768079	16	2.6	17	85	14	63	69	2	0	27	1.00
11768023--11768110	35	2.5	34	78	8	97	65	2	2	29	1.16
11768348--11768393	19	2.3	20	81	7	58	54	4	0	41	1.20
11769934--11770325	105	3.7	105	80	5	313	38	11	10	38	1.77
11770043--11770325	105	2.7	104	83	2	334	39	11	9	38	1.75
11773325--11773388	30	2.1	30	85	5	85	48	14	3	34	1.59
11773556--11773639	42	2.0	42	80	0	96	34	9	15	40	1.80
11773553--11774113	132	4.3	129	77	8	447	38	7	10	43	1.69
11774226--11774271	22	2.0	22	83	4	56	58	0	6	34	1.24
11775633--11775669	11	3.3	11	85	7	56	70	8	5	16	1.30
11777172--11777295	56	2.2	56	84	2	153	50	15	12	22	1.77
11777639--11777672	7	4.6	7	89	10	50	20	0	0	79	0.73
11779804--11779858	11	4.9	11	90	2	83	40	0	14	45	1.45
11788020--11788081	24	2.6	23	82	12	72	46	12	1	38	1.52
11789551--11789599	20	2.4	21	82	3	64	16	4	2	77	1.01
11790084--11790112	7	4.3	7	95	4	51	0	0	10	89	0.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11790074--11790113	17	2.3	18	86	4	55	0	2	12	85	0.71
11790074--11790112	14	2.8	13	85	14	51	0	2	10	87	0.65
11790138--11790336	46	4.3	46	74	6	161	40	15	10	33	1.82
11790541--11790707	49	3.4	47	81	6	165	47	11	8	31	1.70
11791309--11791456	44	3.3	45	79	5	149	49	10	6	33	1.62
11791365--11791438	23	3.3	21	73	19	60	52	12	5	29	1.60
11791512--11791765	21	12.5	21	68	15	113	45	14	6	33	1.71
11791456--11791748	44	7.0	44	77	10	223	45	13	7	33	1.72
11791563--11791673	36	3.1	35	84	3	134	43	13	5	37	1.67
11791644--11791714	23	3.2	22	76	11	83	49	12	4	33	1.60
11791635--11791748	43	2.6	44	86	5	144	46	15	4	33	1.66
11797217--11797258	22	2.0	22	85	4	59	30	9	2	57	1.44
11797223--11797266	22	2.0	22	86	0	61	31	9	4	54	1.52
11801848--11801900	22	2.4	22	93	6	90	49	0	0	50	1.00
11802937--11802969	2	17.0	2	93	6	59	51	0	0	48	1.00
11803992--11804023	2	16.0	2	100	0	64	50	0	0	50	1.00
11806578--11806620	22	2.0	22	86	9	61	60	0	0	39	0.97
11807529--11807560	16	1.9	17	93	6	57	31	0	0	68	0.90
11809019--11809051	8	4.1	8	100	0	66	39	24	0	36	1.56
11815762--11815831	21	3.8	18	85	14	90	72	0	17	10	1.10
11815762--11815819	19	3.0	20	90	9	93	74	0	15	10	1.08
11815762--11815816	7	8.1	7	74	22	55	72	0	16	10	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11815795--11815841	16	2.9	16	87	3	58	74	0	19	6	1.03
11816621--11816798	79	2.3	79	80	5	200	38	7	22	32	1.82
11817286--11817557	46	6.0	46	83	6	263	43	9	11	35	1.74
11817286--11817543	92	2.8	92	85	4	328	43	9	12	35	1.74
11817411--11817453	14	3.3	13	81	18	54	46	6	9	37	1.63
11817297--11817759	21	20.8	22	76	12	257	42	9	11	36	1.74
11817390--11817755	65	5.5	65	75	10	224	41	9	11	37	1.74
11817435--11817759	43	7.4	42	77	9	231	41	9	11	38	1.73
11819299--11819342	23	1.9	23	100	0	88	20	0	9	70	1.14
11821671--11821695	2	12.5	2	100	0	50	52	0	0	48	1.00
11821844--11822707	234	3.7	231	81	5	880	47	9	8	34	1.67
11823529--11823614	30	2.9	30	82	0	100	37	11	3	47	1.57
11824594--11824658	23	2.8	23	77	9	78	38	6	15	40	1.72
11824768--11825276	271	1.9	272	84	4	684	40	8	7	43	1.64
11827199--11827279	24	3.5	24	74	6	94	18	30	7	43	1.78
11827221--11827293	22	3.2	22	73	7	83	15	28	6	49	1.70
11827199--11827293	46	2.1	46	100	0	190	16	29	6	47	1.71
11831153--11831206	19	2.8	19	80	8	65	11	11	1	75	1.11
11832443--11832499	23	2.5	21	76	23	53	50	0	1	47	1.11
11832466--11832553	17	5.1	19	73	21	77	55	0	1	43	1.07
11832466--11832521	18	3.1	19	82	7	73	58	0	0	41	0.98
11832474--11832533	18	3.2	19	78	7	68	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11833533--11834025	264	1.9	264	98	0	959	20	18	19	42	1.89
11834047--11834180	66	2.0	66	95	0	241	19	19	15	45	1.85
11834215--11834262	2	24.0	2	91	0	78	45	0	4	50	1.21
11840566--11840607	16	2.6	16	84	0	57	14	2	23	59	1.47
11843259--11843493	118	2.0	118	83	1	292	25	28	15	29	1.96
11847425--11847474	3	16.0	3	84	12	57	38	2	0	60	1.09
11848248--11848293	17	2.6	18	86	3	58	15	4	0	80	0.86
11848391--11848445	24	2.3	24	84	6	67	76	0	5	18	0.97
11848392--11848443	22	2.3	22	83	9	61	75	0	5	19	1.01
11848391--11848445	25	2.2	24	83	3	65	76	0	5	18	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74