genome.fa.s212.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  65  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12848951--12849001	21	2.5	21	83	3	68	50	13	5	29	1.65
12849071--12849106	19	1.9	18	88	5	54	47	16	13	22	1.82
12849093--12849295	19	10.9	19	68	10	62	48	9	12	28	1.73
12849122--12849349	19	12.4	19	71	11	91	49	12	10	27	1.73
12849106--12849221	38	3.1	36	73	16	112	48	11	10	30	1.72
12849122--12849348	92	2.5	91	82	5	269	49	12	10	27	1.73
12849176--12849361	18	10.2	18	73	8	99	48	11	11	27	1.75
12850461--12850709	58	4.3	58	75	8	211	21	2	28	47	1.62
12850461--12850708	29	8.5	29	72	12	161	21	2	29	47	1.62
12850967--12851044	22	3.6	22	72	13	63	26	6	3	62	1.37
12851117--12851177	30	2.1	29	84	3	77	75	4	0	19	0.98
12851123--12851176	6	9.0	6	76	8	56	75	5	0	18	0.98
12852581--12852861	44	6.3	44	74	12	202	43	12	8	34	1.73
12852869--12853101	68	3.5	67	81	2	227	39	12	9	38	1.75
12852992--12853094	23	4.7	23	67	13	72	37	12	11	37	1.80
12854533--12854595	28	2.2	30	77	13	69	7	19	0	73	1.08
12858136--12858171	18	2.0	18	88	0	54	27	22	8	41	1.82
12860862--12860916	10	5.2	11	77	14	53	45	1	0	52	1.11
12860859--12860908	22	2.3	21	80	12	57	42	2	0	56	1.11
12861060--12861097	2	19.0	2	88	0	58	50	0	5	44	1.24
12861851--12861875	12	2.1	12	100	0	50	64	8	0	28	1.22
12865929--12865979	9	5.4	9	73	17	50	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12871808--12871841	16	2.1	16	88	0	50	29	20	5	44	1.75
12872611--12872716	32	3.3	33	77	6	92	55	7	5	31	1.51
12873071--12873103	16	2.1	16	88	11	50	60	3	0	36	1.12
12881856--12881956	50	2.0	50	88	0	148	44	15	15	23	1.85
12890317--12890352	8	4.4	8	89	6	54	69	0	0	30	0.89
12890317--12890352	17	2.2	16	90	5	54	69	0	0	30	0.89
12894366--12894390	13	1.9	13	100	0	50	20	0	0	80	0.72
12897822--12897862	18	2.3	18	87	4	57	75	2	7	14	1.12
12903083--12903142	6	10.2	6	78	10	70	16	0	43	40	1.48
12903046--12903101	29	1.9	29	85	7	78	19	7	39	33	1.79
12903046--12903130	29	2.9	29	81	6	75	18	4	41	35	1.72
12905156--12905291	67	2.0	67	97	0	254	22	13	16	47	1.82
12908174--12908203	15	1.9	16	93	6	53	73	0	0	26	0.84
12908168--12908206	8	4.9	8	84	9	53	71	2	0	25	0.98
12914340--12914385	24	1.9	24	86	8	67	39	0	2	58	1.10
12917742--12917783	17	2.4	18	88	8	68	38	19	0	42	1.51
12919877--12920210	165	2.0	165	95	0	605	36	10	9	42	1.73
12921250--12921307	29	2.0	29	83	6	73	27	3	32	36	1.74
12926150--12926195	22	2.1	22	84	8	58	80	2	8	8	0.99
12929786--12929834	17	2.8	17	81	12	55	36	2	22	38	1.66
12929883--12929931	18	2.7	18	78	12	64	14	2	36	46	1.56
12929882--12929983	34	2.9	34	80	9	91	19	1	36	42	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12929919--12929997	34	2.2	36	82	8	92	18	1	39	40	1.59
12930197--12930238	23	1.9	21	90	9	66	23	7	26	42	1.80
12931991--12933105	129	8.7	128	76	8	707	38	7	7	46	1.62
12932308--12932528	115	1.9	114	84	5	293	42	6	5	45	1.53
12932174--12932658	245	2.0	247	83	3	629	39	6	7	46	1.57
12932509--12933047	131	4.1	128	78	6	467	38	7	7	46	1.61
12932501--12932985	260	1.9	261	81	3	600	38	7	7	46	1.61
12932962--12932988	14	1.9	14	100	0	54	51	7	0	40	1.30
12933425--12933559	66	2.0	66	100	0	270	50	7	8	33	1.62
12933882--12933924	9	4.7	9	85	5	50	81	4	0	13	0.84
12933881--12933917	9	3.9	10	86	10	51	83	5	0	10	0.79
12933891--12933929	16	2.4	16	91	8	62	82	2	0	15	0.79
12933881--12933917	19	1.9	19	88	0	56	83	5	0	10	0.79
12940129--12940181	18	2.8	19	80	8	56	45	0	0	54	0.99
12940716--12940742	2	13.5	2	100	0	54	48	0	0	51	1.00
12944702--12944746	10	4.0	12	75	16	51	68	0	0	31	0.89
12945062--12945178	8	14.2	8	68	21	55	47	29	1	21	1.60
12945053--12945170	25	5.2	24	68	20	74	47	26	2	23	1.64
12945062--12945227	15	10.4	16	69	11	65	47	28	1	22	1.59
12945152--12945186	17	2.2	15	90	10	52	57	34	0	8	1.29
12945184--12945227	15	2.9	15	86	0	70	47	22	0	29	1.51
12945184--12945246	30	2.1	30	84	0	81	46	23	3	26	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12952250--12952299	21	2.5	20	83	3	64	16	10	10	64	1.50
12956056--12956128	21	3.5	21	67	0	65	27	20	19	32	1.97
12956048--12956148	42	2.4	42	94	0	175	24	22	19	32	1.97
12959510--12959549	20	2.0	20	85	0	53	15	5	7	72	1.24
12960420--12960506	31	2.9	30	87	3	129	57	0	2	40	1.11
12962897--12962933	2	19.0	2	88	5	58	48	0	2	48	1.15
12975627--12975661	18	1.9	18	94	0	61	31	0	5	62	1.18
12975667--12975716	19	2.5	20	87	3	66	54	4	0	42	1.19
12975753--12975788	18	1.9	19	88	5	56	41	0	5	52	1.24
12976354--12976422	27	2.5	27	92	2	111	46	10	5	37	1.62
12982254--12982298	2	22.0	2	82	13	56	46	6	0	46	1.29
12982253--12982298	11	4.0	11	81	10	56	45	6	0	47	1.28
12982254--12982298	13	3.7	12	82	11	56	46	6	0	46	1.29
12986138--12986182	23	2.0	23	81	0	54	62	4	4	28	1.34
12986497--12986531	18	1.9	18	94	0	61	31	0	5	62	1.18
12986535--12986586	19	2.7	19	90	3	77	57	3	0	38	1.17
12986623--12986658	18	1.9	19	88	5	56	41	0	5	52	1.24
12987224--12987292	27	2.5	27	88	2	93	43	10	8	37	1.69
12993129--12993168	2	20.0	2	94	0	71	50	2	0	47	1.14
12996609--12996634	12	2.2	12	100	0	52	65	15	0	19	1.27
12996982--12997011	16	1.9	16	93	6	53	66	6	0	26	1.16
13007526--13007598	29	2.6	27	81	12	69	50	1	2	45	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13007689--13007744	29	1.9	29	82	7	69	46	5	0	48	1.25
13009942--13010038	45	2.2	45	96	0	176	38	21	10	29	1.87
13014694--13014736	13	3.1	14	81	15	54	25	6	4	62	1.40
13015116--13015158	9	5.1	9	83	16	65	55	0	0	44	0.99
13015114--13015157	2	23.5	2	86	13	67	54	0	0	45	0.99
13015271--13015349	38	2.1	38	97	0	149	43	16	13	26	1.86
13015600--13015644	21	2.1	21	84	8	56	55	4	2	37	1.32
13020547--13020616	35	2.0	35	97	0	131	35	0	18	45	1.50
13023131--13023166	12	3.0	12	87	0	54	38	0	5	55	1.23
13029431--13029537	55	1.9	55	90	5	171	23	5	14	57	1.58
13030447--13030529	36	2.3	36	79	6	89	20	8	15	55	1.66
13041750--13041803	27	2.0	27	88	0	81	35	33	5	25	1.80
13048693--13048736	19	2.2	20	88	4	63	31	2	0	65	1.05
13048814--13048840	7	3.9	7	100	0	54	74	0	0	25	0.83
13048674--13049279	303	2.0	292	89	4	926	50	6	4	38	1.49
13050622--13050668	24	1.9	25	95	4	87	46	14	6	31	1.70
13055395--13055429	3	11.7	3	87	0	52	2	60	34	2	1.26
13055380--13055430	9	5.7	9	85	0	57	1	52	33	11	1.49
13059773--13062829	339	9.0	339	94	0	5308	28	22	13	35	1.92
13065509--13065552	23	2.0	23	90	4	72	63	9	11	15	1.51
13071208--13071253	21	2.3	19	85	10	65	65	0	0	34	0.93
13072570--13072608	12	3.0	13	78	14	53	58	0	5	35	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13072794--13072818	10	2.5	10	100	0	50	8	0	0	92	0.40
13079622--13079657	14	2.6	15	87	12	51	63	13	2	19	1.41
13079924--13079977	3	18.0	3	100	0	108	66	0	0	33	0.92
13086186--13086237	22	2.4	21	81	9	59	17	0	5	76	0.97
13089687--13089733	16	2.8	17	83	9	60	78	8	4	8	1.07
13090203--13090281	9	8.2	10	72	17	60	49	2	0	48	1.14
13090152--13090223	11	6.2	12	75	21	66	48	0	1	50	1.09
13090212--13090291	19	4.3	19	68	15	58	50	3	0	46	1.19
13090658--13090704	23	2.0	24	84	12	62	27	53	0	19	1.45
13093507--13093542	12	3.0	12	95	0	63	41	2	55	0	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74