genome.fa.s212.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  52  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10464594--10464637	22	2.0	22	90	0	70	45	11	11	31	1.76
10468742--10468785	22	2.0	22	95	0	79	43	13	11	31	1.80
10470316--10470376	25	2.4	25	97	0	113	11	29	11	47	1.75
10472640--10472683	22	2.0	22	95	0	79	43	13	11	31	1.80
10472643--10472695	22	2.4	22	84	6	54	49	9	11	30	1.70
10473890--10474015	62	2.0	62	98	0	243	23	16	20	39	1.92
10475883--10475939	30	1.9	30	85	0	78	52	1	0	45	1.11
10475900--10475966	26	2.7	24	75	8	62	61	1	0	37	1.05
10476502--10476538	17	2.1	19	85	10	51	29	5	2	62	1.31
10478377--10478453	31	2.5	31	84	2	91	51	1	0	46	1.09
10478409--10478500	37	2.5	39	77	12	104	53	4	1	41	1.28
10479741--10479773	14	2.3	15	89	5	50	60	9	0	30	1.27
10480553--10480601	15	3.3	14	83	16	55	10	0	12	77	0.99
10480553--10480596	22	2.0	22	87	12	65	9	0	11	79	0.93
10481306--10481354	15	3.3	15	73	0	53	34	0	2	63	1.06
10481679--10481742	27	2.3	28	82	15	80	48	1	0	50	1.10
10481679--10481768	29	3.2	27	73	13	67	47	1	1	50	1.15
10481824--10481857	12	2.8	12	90	4	50	41	5	0	52	1.25
10482954--10482995	21	2.0	21	90	0	66	28	2	40	28	1.69
10489121--10489164	19	2.2	20	88	4	63	13	0	63	22	1.29
10489694--10489742	25	1.9	26	91	4	82	46	2	10	40	1.49
10493460--10493586	18	7.1	18	69	16	93	35	30	3	29	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10493465--10493507	21	2.0	21	90	0	68	30	37	2	30	1.70
10496829--10497037	53	3.9	53	78	10	171	33	9	8	48	1.65
10497305--10497348	19	2.4	18	81	7	52	45	36	0	18	1.49
10497460--10497497	18	2.1	19	90	5	60	44	31	0	23	1.54
10499241--10499273	6	5.7	6	89	3	50	87	9	0	3	0.63
10499241--10499294	25	2.2	25	83	6	65	83	7	5	3	0.91
10499271--10499308	14	2.8	14	88	4	51	76	2	15	5	1.08
10499380--10499420	19	2.1	20	86	4	57	0	4	14	80	0.87
10504256--10504358	52	2.0	52	84	3	138	29	18	6	45	1.75
10506209--10506247	18	2.1	19	90	4	62	51	0	0	48	1.00
10512213--10512242	3	10.0	3	100	0	60	33	0	0	66	0.92
10515453--10515497	21	2.1	21	95	0	81	35	8	20	35	1.84
10517224--10517260	12	3.5	11	82	17	51	16	0	8	75	1.02
10517234--10517289	12	4.4	12	78	14	51	21	0	8	69	1.15
10517465--10517507	19	2.4	18	81	11	52	67	0	6	25	1.15
10517673--10517701	13	2.1	14	93	6	51	75	6	3	13	1.13
10534396--10534425	3	10.0	3	100	0	60	33	0	0	66	0.92
10537633--10537675	21	2.0	21	95	0	77	34	9	20	34	1.85
10539412--10539478	12	5.6	12	75	19	52	20	0	7	71	1.10
10539656--10539698	19	2.4	18	81	11	52	67	0	6	25	1.15
10552066--10552340	40	6.9	40	79	3	250	25	14	19	40	1.90
10552066--10552340	120	2.3	118	81	3	318	25	14	19	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10552505--10552541	6	6.2	6	87	0	56	45	0	2	51	1.15
10553443--10553495	3	17.7	3	96	0	97	32	0	1	66	1.03
10553684--10553733	19	2.7	18	75	19	50	70	0	6	24	1.10
10554692--10554839	50	2.9	50	86	6	174	27	10	17	44	1.82
10555430--10555475	24	1.9	24	95	0	83	23	26	8	41	1.83
10555730--10555868	42	3.3	41	76	8	136	33	7	11	47	1.69
10555764--10556244	42	11.6	42	71	10	267	32	9	12	45	1.75
10555706--10556038	170	2.0	170	83	7	426	31	9	12	46	1.74
10556014--10556079	35	1.9	35	84	3	89	34	12	9	43	1.73
10559154--10559197	18	2.6	16	80	13	52	52	2	0	45	1.13
10559165--10559197	16	2.0	17	88	5	50	57	3	0	39	1.14
10567234--10567358	49	2.4	52	79	9	130	38	8	6	47	1.59
10567241--10567466	53	4.3	52	76	9	167	34	7	7	50	1.61
10567758--10567804	18	2.6	18	82	3	58	48	29	0	21	1.50
10567837--10567964	7	19.4	7	67	19	62	40	32	1	25	1.65
10567900--10567958	26	2.3	26	85	5	75	42	32	0	25	1.55
10567876--10567952	19	4.1	19	73	15	70	40	33	1	24	1.64
10567911--10567986	33	2.3	32	84	4	89	42	35	0	22	1.54
10569690--10569729	21	2.0	21	90	5	64	80	5	10	5	1.02
10569690--10569748	19	3.0	19	80	9	64	76	3	13	6	1.12
10569702--10569745	16	2.9	15	83	9	54	72	2	18	6	1.17
10569813--10569851	19	2.0	21	90	10	64	0	5	12	82	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10577945--10577994	22	2.3	21	86	6	64	18	0	12	70	1.17
10578001--10578034	3	11.3	3	87	0	50	26	0	5	67	1.13
10578001--10578034	15	2.3	15	100	0	68	26	0	5	67	1.13
10578215--10578264	19	2.7	18	75	19	50	70	0	6	24	1.10
10578622--10578648	4	6.8	4	100	0	54	48	0	0	51	1.00
10590339--10590425	40	2.2	40	85	6	115	25	18	17	39	1.92
10590517--10590582	33	2.0	33	90	0	105	24	15	22	37	1.92
10590549--10590731	40	4.6	40	86	3	226	24	15	20	39	1.92
10590549--10590746	80	2.5	81	84	3	265	24	15	20	39	1.91
10591847--10591899	3	17.7	3	96	0	97	32	0	1	66	1.03
10592093--10592142	19	2.7	18	75	19	50	70	0	6	24	1.10
10592300--10592339	14	3.0	13	89	7	62	75	2	2	20	1.04
10593217--10593395	58	3.1	57	75	10	168	41	11	4	41	1.61
10594389--10594415	14	1.9	14	100	0	54	33	0	0	66	0.92
10595862--10595997	50	2.7	50	83	2	157	27	13	16	41	1.86
10596703--10596803	44	2.3	44	80	0	112	25	6	9	57	1.56
10596931--10597069	42	3.3	40	73	11	118	33	8	11	46	1.70
10596955--10597396	42	10.6	42	70	12	146	32	10	11	45	1.74
10596965--10597396	84	5.2	83	73	11	262	32	10	11	45	1.74
10596912--10597240	171	1.9	170	83	4	421	32	9	11	45	1.74
10597146--10597365	119	1.8	119	84	9	306	32	9	11	47	1.71
10600362--10600405	18	2.6	16	80	13	52	52	2	0	45	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10600373--10600405	16	2.0	17	88	5	50	57	3	0	39	1.14
10603742--10603774	3	11.0	3	100	0	66	66	0	0	33	0.92
10604473--10604573	10	10.4	10	73	11	68	48	5	0	45	1.26
10604473--10604567	9	10.0	9	76	10	64	47	5	0	47	1.24
10604474--10604567	19	5.0	19	80	1	91	46	5	0	47	1.25
10604521--10604583	20	3.2	20	88	2	83	57	11	0	31	1.34
10604521--10604605	19	4.5	18	78	8	80	56	10	0	32	1.34
10604521--10604585	19	3.4	19	89	4	94	55	10	0	33	1.35
10604648--10604702	20	3.0	18	71	21	51	56	7	0	36	1.27
10604767--10604810	22	2.0	21	83	12	54	50	6	0	43	1.29
10604871--10604924	24	2.3	23	78	15	56	53	1	1	42	1.22
10610373--10610598	53	4.3	52	76	10	160	34	8	7	49	1.62
10610967--10611094	7	19.4	7	67	19	53	40	32	1	25	1.65
10611030--10611088	26	2.3	26	82	11	68	42	33	0	23	1.55
10611006--10611082	19	4.1	19	75	9	77	40	35	1	23	1.63
10611003--10611076	38	1.9	38	91	0	121	39	37	1	21	1.62
10612805--10612852	20	2.3	22	82	13	57	83	6	6	4	0.91
10612816--10612870	21	2.7	20	80	5	65	80	3	12	3	0.98
10612829--10612872	16	2.9	15	83	9	54	72	2	18	6	1.17
10612940--10612978	19	2.0	21	90	10	64	0	5	12	82	0.83
10616680--10616707	14	2.0	14	100	0	56	57	7	14	21	1.61
10617368--10617503	62	2.2	62	84	2	166	33	13	16	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10629917--10629966	22	2.3	22	83	13	59	18	0	12	70	1.17
10629928--10629998	21	3.4	21	75	14	51	22	0	9	67	1.20
10642515--10642580	33	2.0	33	84	0	87	28	15	19	36	1.92
10642547--10642757	40	5.3	40	80	4	203	25	15	19	39	1.91
10642547--10642784	80	3.0	79	82	5	228	25	15	19	39	1.91
10642950--10642986	6	6.2	6	87	0	56	45	0	2	51	1.15
10643901--10643947	3	15.7	3	95	0	85	31	0	2	65	1.04
10644136--10644185	17	2.9	17	77	14	50	70	0	8	22	1.13
10644142--10644198	17	3.4	17	73	9	53	64	0	7	28	1.19
10645159--10645306	50	2.9	50	87	6	183	27	11	17	43	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74