genome.fa.s212.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  47  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9647682--9647963	57	4.9	56	78	8	248	22	13	19	44	1.86
9647683--9647963	114	2.5	115	80	7	279	22	13	19	44	1.86
9647821--9647989	57	2.9	58	83	2	162	21	15	18	44	1.86
9652346--9652422	27	3.1	26	72	22	76	45	1	1	51	1.17
9654090--9654130	21	1.9	22	90	5	66	7	4	34	53	1.50
9659704--9659931	112	2.0	116	85	9	315	53	3	10	31	1.53
9664464--9664602	57	2.4	58	89	4	178	39	7	7	45	1.61
9668004--9668068	16	4.2	16	71	9	55	30	6	9	53	1.57
9668045--9668137	20	4.6	20	83	1	96	33	5	9	51	1.57
9668157--9668283	52	2.3	55	86	5	170	33	4	5	56	1.43
9668161--9668283	56	2.3	52	85	5	156	33	4	5	56	1.44
9668196--9668314	56	2.1	56	81	1	132	31	7	6	54	1.54
9668333--9668414	32	2.5	33	79	13	82	29	3	7	59	1.41
9668394--9668459	33	2.1	31	83	11	80	31	1	6	60	1.30
9668424--9668566	20	7.0	20	74	10	128	31	5	12	50	1.63
9668454--9668567	41	2.8	41	89	0	174	31	7	13	48	1.69
9668577--9668637	32	1.9	32	86	0	86	27	1	9	60	1.38
9668795--9668850	20	2.8	20	73	10	60	37	3	7	51	1.47
9675702--9675753	20	2.8	18	81	13	70	30	7	9	51	1.62
9675724--9675786	32	2.0	33	84	6	85	31	7	7	52	1.59
9675774--9675866	20	4.6	20	87	1	123	32	5	10	51	1.59
9675889--9676204	56	5.7	54	73	13	207	29	5	10	54	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9675958--9676021	20	3.0	20	77	16	65	34	6	7	51	1.56
9675897--9676222	171	1.9	171	80	6	383	29	5	10	54	1.56
9676248--9676314	33	2.1	32	88	2	98	26	2	10	59	1.45
9676292--9676353	21	3.0	21	75	13	74	30	6	9	53	1.59
9676293--9676351	20	2.9	19	76	11	64	32	6	8	52	1.58
9676362--9676432	32	2.3	32	88	9	103	29	2	9	57	1.45
9676585--9676653	18	3.7	19	79	11	81	37	5	10	46	1.62
9677768--9677808	21	2.0	21	85	4	57	26	17	7	48	1.73
9679817--9679853	8	4.6	8	96	0	65	24	32	13	29	1.93
9685557--9685649	29	3.2	30	63	27	72	38	15	6	39	1.73
9685447--9685714	58	4.6	58	85	6	348	37	14	5	42	1.69
9687717--9688023	44	7.0	44	80	3	307	41	18	13	26	1.88
9687717--9688023	132	2.3	131	82	5	361	41	18	13	26	1.88
9688655--9688713	22	2.7	21	81	5	64	33	18	8	38	1.81
9689844--9689923	8	10.7	7	75	16	56	7	15	0	77	0.98
9689837--9689923	9	10.2	8	72	17	52	8	14	0	77	0.99
9689837--9689923	17	5.2	16	75	13	77	8	14	0	77	0.99
9689859--9689915	28	2.0	28	90	6	89	8	14	0	77	0.99
9693952--9693995	19	2.3	19	100	0	88	45	11	9	34	1.72
9696971--9697007	12	3.1	12	100	0	74	48	8	0	43	1.32
9697398--9697439	21	2.0	20	90	4	66	47	0	0	52	1.00
9697401--9697445	21	2.3	19	85	11	63	51	2	0	46	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9698173--9698197	7	3.6	7	100	0	50	64	0	12	24	1.27
9703926--9703973	16	3.1	16	76	14	55	50	2	0	47	1.12
9705432--9705465	6	5.7	6	92	0	59	20	11	0	67	1.21
9705432--9705469	12	3.2	12	92	0	67	21	10	0	68	1.19
9706566--9706598	13	2.5	13	95	0	57	39	24	12	24	1.89
9707875--9707916	14	2.9	14	82	3	57	4	2	9	83	0.88
9707875--9707920	22	2.1	21	84	15	58	4	4	8	82	0.93
9709360--9709470	29	3.7	29	79	4	105	33	7	10	48	1.65
9709385--9709468	30	2.8	30	85	3	98	33	8	9	48	1.66
9709493--9709565	29	2.5	31	75	20	84	49	10	8	31	1.67
9709503--9709566	29	2.2	30	80	8	87	50	10	9	29	1.69
9710354--9710488	60	2.2	60	83	8	159	42	12	5	38	1.67
9710398--9710512	60	1.9	60	80	3	133	46	9	7	35	1.65
9714868--9714929	28	2.3	27	84	13	76	74	11	1	12	1.15
9714893--9714948	23	2.4	24	85	8	71	78	10	0	10	0.96
9715203--9715240	14	2.8	13	84	15	51	84	10	2	2	0.83
9715204--9715239	13	2.8	12	91	8	54	83	11	2	2	0.86
9715847--9715871	13	1.9	13	100	0	50	32	48	20	0	1.50
9715846--9715884	18	2.2	18	86	9	53	33	46	17	2	1.62
9716328--9716357	13	2.3	13	100	0	60	50	26	0	23	1.50
9717194--9717239	23	2.0	23	100	0	92	26	13	8	52	1.69
9727709--9727778	9	7.9	9	78	9	81	84	4	0	11	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9727711--9727794	14	5.7	14	75	13	71	83	3	2	10	0.86
9728797--9728975	35	5.0	35	71	11	112	19	23	13	43	1.87
9728844--9728969	37	3.5	35	71	16	87	20	23	13	42	1.88
9728871--9729558	34	19.5	34	64	19	155	21	22	13	43	1.86
9728961--9729058	36	2.7	35	73	13	92	21	27	11	39	1.87
9728800--9729636	145	5.9	143	83	8	933	21	22	13	43	1.86
9728800--9729636	73	11.8	72	84	8	968	21	22	13	43	1.86
9729101--9729492	34	11.3	33	68	15	165	21	21	12	43	1.86
9730071--9730129	10	5.5	11	72	23	54	77	8	0	13	0.97
9730055--9730107	26	2.0	26	85	0	70	71	11	1	15	1.22
9733155--9733186	3	10.7	3	93	0	55	31	3	0	65	1.08
9733487--9733853	198	1.9	196	85	7	512	35	11	7	45	1.69
9734634--9734667	12	2.7	13	86	4	52	70	2	0	26	1.01
9735374--9735413	15	2.5	17	80	19	50	55	0	15	30	1.41
9736677--9737208	73	7.3	73	84	3	646	20	21	13	43	1.87
9736677--9737208	219	2.5	215	88	2	735	20	21	13	43	1.87
9737664--9737715	22	2.4	22	84	12	63	76	9	0	13	1.01
9737665--9737715	25	2.1	24	82	10	59	78	7	0	13	0.96
9739964--9740016	22	2.4	21	84	12	63	26	11	9	52	1.67
9739974--9740018	22	2.0	23	95	4	83	24	13	8	53	1.68
9746392--9746453	25	2.5	25	82	10	74	50	1	0	48	1.10
9746427--9746477	23	2.3	23	83	6	61	52	3	0	43	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9746508--9746652	73	2.0	73	98	0	281	33	11	12	42	1.78
9749203--9749354	82	1.9	81	81	4	189	34	7	14	43	1.73
9749894--9749944	25	2.1	25	89	10	79	29	1	15	52	1.54
9751744--9751781	20	1.9	20	84	10	51	55	7	7	28	1.57
9753594--9753629	17	2.2	17	90	5	56	63	0	5	30	1.17
9760979--9761028	25	2.0	25	88	11	77	30	2	16	52	1.55
9764679--9764720	17	2.6	16	81	7	57	61	0	4	33	1.17
9770384--9770442	2	29.5	2	92	0	100	54	0	45	0	0.99
9771047--9771085	19	2.1	19	95	0	69	35	20	17	25	1.95
9771911--9771998	22	4.0	22	71	12	65	38	6	11	43	1.67
9772219--9772273	22	2.5	22	85	8	76	34	3	20	41	1.69
9772446--9772551	42	2.5	43	75	9	108	38	6	12	42	1.68
9773728--9773994	144	1.9	138	79	11	299	31	13	15	39	1.85
9775981--9776012	10	3.2	10	90	0	55	87	0	9	3	0.64
9775944--9776060	62	1.9	60	87	5	171	50	0	12	35	1.47
9776044--9776081	20	1.9	20	94	0	67	81	0	13	5	0.85
9776678--9776722	23	1.9	24	90	4	74	82	6	2	8	0.93
9787716--9787852	47	3.0	46	82	2	157	29	13	10	45	1.77
9787733--9787864	46	2.8	46	83	1	147	31	15	10	43	1.80
9787767--9787880	46	2.5	46	83	1	138	34	15	9	40	1.80
9788434--9788471	19	2.0	19	89	0	58	52	21	5	21	1.66
9788461--9788505	21	2.1	21	88	8	65	42	15	13	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9790584--9790642	13	4.5	13	74	17	50	47	38	0	13	1.43
9790584--9790672	7	13.3	7	76	8	78	43	38	0	17	1.50
9790594--9790642	20	2.5	20	100	0	98	46	38	0	14	1.44
9790594--9790669	20	3.8	20	85	0	89	44	35	0	19	1.51
9790717--9790759	22	2.0	22	81	9	52	30	13	6	48	1.69
9796601--9796660	19	3.3	18	80	13	54	51	0	1	46	1.10
9797237--9797284	24	2.0	23	88	11	71	58	2	0	39	1.10
9797637--9797665	8	3.6	8	100	0	58	10	10	51	27	1.68
9797912--9797944	7	4.9	7	92	3	50	0	12	0	87	0.53
9798099--9798128	16	1.9	16	93	6	53	50	6	3	40	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74