genome.fa.s212.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  16  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4259475--4259786	170	1.8	170	82	2	403	33	16	12	38	1.86
4258871--4259928	526	2.0	526	85	2	1448	33	15	12	38	1.85
4259398--4259990	294	2.0	294	83	4	759	32	15	13	38	1.87
4259655--4259910	124	2.1	124	84	4	329	32	15	12	39	1.85
4260787--4261046	80	3.3	80	88	1	380	23	8	26	42	1.82
4265511--4265577	18	3.7	18	76	7	64	37	26	7	28	1.84
4268281--4268328	24	2.0	24	87	4	69	43	4	10	41	1.58
4274027--4274072	20	2.2	20	88	11	67	28	4	4	63	1.33
4276772--4276822	21	2.4	21	83	0	66	33	3	3	58	1.35
4276819--4277030	98	2.2	98	100	0	424	41	7	4	46	1.53
4277340--4277435	49	1.9	51	87	6	144	27	4	5	63	1.34
4278199--4278313	39	2.9	39	66	23	105	48	1	2	46	1.26
4279519--4279577	27	2.1	28	93	3	102	52	30	1	15	1.52
4287373--4287405	16	2.1	16	88	5	50	66	3	6	24	1.28
4290773--4291020	86	2.8	87	83	5	286	22	23	16	36	1.94
4291399--4291447	23	2.1	23	100	0	98	24	40	8	26	1.83
4294365--4294406	22	1.9	22	90	0	66	28	9	14	47	1.75
4298263--4298305	22	2.0	22	90	0	68	34	11	9	44	1.73
4312031--4312067	2	18.5	2	94	0	65	54	0	45	0	1.00
4312029--4312071	10	4.5	10	85	11	63	58	0	41	0	0.98
4316855--4317175	159	2.0	156	85	7	428	47	19	7	25	1.75
4325376--4325405	2	15.0	2	92	0	51	3	46	0	50	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4329461--4329493	2	16.5	2	100	0	66	48	0	0	51	1.00
4335219--4335264	4	11.8	4	86	4	67	26	2	0	71	0.97
4335682--4335728	20	2.3	20	81	0	58	29	23	6	40	1.79
4335948--4336244	133	2.2	136	83	7	376	28	10	12	48	1.73
4336366--4336394	2	14.5	2	100	0	58	48	0	0	51	1.00
4339119--4339384	44	6.0	43	70	13	139	40	7	14	37	1.74
4339172--4339384	89	2.4	88	77	6	223	40	7	14	37	1.74
4339119--4339393	45	6.2	45	73	7	188	40	7	14	38	1.73
4339488--4339552	22	2.9	23	67	15	55	41	4	12	41	1.63
4339500--4339639	75	1.9	76	81	1	174	38	6	10	44	1.65
4339431--4339824	46	8.5	44	68	14	152	36	5	13	44	1.69
4339689--4339822	22	5.8	22	66	7	70	34	2	17	46	1.60
4339806--4339962	79	2.0	80	83	6	203	35	8	12	43	1.73
4339888--4339973	44	2.0	43	83	2	109	36	9	12	41	1.75
4340113--4340162	18	2.9	17	82	5	64	40	16	8	36	1.77
4343971--4343995	2	12.5	2	100	0	50	0	0	48	52	1.00
4347091--4347138	25	1.9	25	91	0	78	33	12	18	35	1.89
4347179--4348029	294	3.0	287	84	7	1001	26	15	21	36	1.93
4355928--4355974	13	3.5	14	77	16	55	68	2	0	29	1.02
4355925--4355984	25	2.4	24	78	10	66	61	1	0	36	1.06
4356514--4356553	20	2.0	20	85	5	53	80	0	10	10	0.92
4359881--4359988	24	4.2	26	84	5	116	63	10	1	24	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4359930--4359988	24	2.5	24	100	0	118	67	3	0	28	1.06
4360611--4360691	18	4.4	18	73	18	69	33	2	1	62	1.16
4360675--4360713	21	1.9	19	85	10	51	41	2	0	56	1.13
4362637--4362691	17	3.2	17	80	15	60	56	0	0	43	0.99
4362650--4362728	38	2.1	38	81	15	92	56	0	1	41	1.07
4363342--4363495	79	1.9	80	90	1	247	58	5	9	25	1.52
4368140--4368236	51	2.0	51	89	6	155	30	13	14	41	1.84
4383803--4383833	2	15.5	2	100	0	62	48	0	0	51	1.00
4389012--4389041	15	2.1	15	93	6	53	36	6	0	56	1.26
4388985--4389758	219	3.5	216	82	5	901	24	9	9	55	1.62
4390188--4390311	35	3.5	35	83	3	149	51	13	4	30	1.60
4390398--4390509	24	5.0	24	78	13	94	54	8	5	32	1.52
4394712--4394767	22	2.5	22	72	16	53	48	5	5	41	1.49
4395979--4396019	21	2.0	21	90	0	64	36	14	4	43	1.67
4396476--4396521	22	2.1	22	87	0	65	39	6	8	45	1.61
4396429--4396610	66	2.8	65	79	5	159	37	7	9	45	1.65
4396549--4396627	22	3.5	22	69	10	61	40	6	8	44	1.61
4396515--4396612	33	3.0	32	71	11	81	37	6	8	47	1.58
4396630--4396703	22	3.4	22	73	0	67	44	10	4	40	1.58
4396848--4396889	22	1.9	22	85	0	57	28	7	11	52	1.64
4397034--4397093	21	2.8	22	82	5	86	33	3	8	55	1.47
4397398--4397633	22	10.8	22	77	5	129	38	4	8	47	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4397379--4397516	44	3.2	44	83	5	138	42	4	6	46	1.49
4397426--4397507	11	7.5	11	71	8	69	43	4	3	47	1.42
4397413--4397535	22	5.7	21	83	8	131	42	4	4	48	1.43
4397398--4397535	43	3.2	43	84	5	152	41	4	6	47	1.49
4397639--4398037	22	18.5	22	69	10	135	36	9	5	48	1.59
4397704--4397743	19	2.1	19	90	0	62	40	7	0	52	1.30
4397637--4397836	84	2.3	85	81	9	212	33	6	6	54	1.51
4397736--4397819	43	2.0	41	86	9	116	28	4	4	61	1.36
4397858--4398009	64	2.4	65	79	3	164	40	12	3	42	1.61
4398074--4398134	22	2.8	22	80	7	72	44	6	4	44	1.51
4398572--4398636	34	1.9	34	93	6	114	46	12	3	38	1.57
4400371--4400424	17	3.2	17	75	0	54	40	1	3	53	1.29
4402982--4403073	31	3.0	30	76	6	94	34	6	9	48	1.62
4403164--4403251	29	3.0	28	74	14	79	48	4	0	46	1.22
4408030--4408064	2	18.0	2	94	5	63	51	0	0	48	1.00
4409784--4410048	57	4.7	56	83	4	300	35	10	6	46	1.66
4409785--4410050	114	2.3	115	87	3	360	35	10	6	46	1.65
4409902--4409989	30	3.1	29	65	21	76	37	13	3	45	1.61
4411115--4411176	6	10.5	6	91	5	92	82	0	1	16	0.75
4411418--4411606	44	4.4	44	85	7	221	42	18	14	23	1.88
4411395--4411606	88	2.4	88	84	5	254	42	17	14	25	1.87
4411851--4411945	42	2.3	42	81	7	104	33	14	12	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4411851--4411959	42	2.6	41	77	8	103	33	16	11	38	1.85
4411867--4411959	42	2.2	43	82	5	118	30	16	13	39	1.87
4411968--4412297	79	4.2	79	89	1	464	34	17	10	37	1.83
4412084--4412480	21	19.8	20	68	13	138	36	16	9	38	1.80
4412084--4412139	20	2.7	21	88	2	87	39	16	7	37	1.76
4412174--4412218	20	2.2	21	84	4	56	37	15	8	37	1.79
4412174--4412413	100	2.4	100	90	2	358	35	17	10	36	1.84
4412241--4412464	21	10.9	21	75	9	160	37	15	8	37	1.78
4412503--4412588	21	3.9	21	73	11	73	32	16	10	40	1.82
4412531--4412615	25	3.6	25	80	13	108	32	12	11	42	1.80
4412553--4412615	13	5.3	13	68	27	59	36	14	11	38	1.81
4412506--4412615	46	2.4	46	90	0	166	34	13	10	40	1.80
4412927--4413087	78	2.1	79	80	1	180	29	18	8	44	1.78
4413707--4413751	18	2.5	17	76	13	54	6	11	0	82	0.84
4413712--4413772	29	2.0	29	84	6	77	9	18	0	72	1.11
4413718--4413754	19	1.9	19	94	0	65	10	13	0	75	1.04
4413712--4413769	30	1.9	31	85	3	82	8	17	0	74	1.06
4414136--4414198	13	4.8	13	80	14	60	1	17	3	77	0.97
4414143--4414190	9	5.4	8	79	20	51	0	16	4	79	0.89
4417676--4417882	78	2.7	74	80	10	215	37	9	6	45	1.63
4418923--4418968	16	2.8	17	80	9	60	78	2	2	17	0.96
4418923--4418976	25	2.1	25	86	6	72	77	3	1	16	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4419269--4419311	21	2.1	20	86	4	59	2	16	0	81	0.79
4419327--4419390	21	3.0	20	77	8	65	31	23	0	45	1.53
4420048--4420103	21	2.8	21	83	5	71	55	1	16	26	1.51
4420048--4420111	21	3.0	21	82	8	69	53	1	17	28	1.53
4423274--4423335	19	3.3	19	73	8	63	61	8	1	29	1.34
4425410--4425573	77	2.1	77	82	5	188	45	15	4	34	1.67
4425943--4425977	2	17.5	2	100	0	70	0	51	0	48	1.00
4426067--4426115	25	2.0	25	84	7	66	8	10	14	67	1.42
4429795--4429860	26	2.6	25	79	15	80	51	1	1	45	1.19
4429793--4429865	25	2.9	25	80	8	85	50	1	1	46	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74