genome.fa.s212.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  66  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13093506--13093555	18	3.0	17	77	11	50	42	2	56	0	1.11
13093554--13093585	6	5.3	6	92	0	55	62	0	37	0	0.95
13099899--13099925	13	2.1	13	100	0	54	14	11	14	59	1.62
13100389--13100430	16	2.6	17	81	7	52	45	0	0	54	0.99
13101160--13101205	24	1.9	24	86	0	65	50	0	0	50	1.00
13101160--13101233	19	4.1	19	73	13	66	51	0	1	47	1.09
13102072--13102105	17	1.9	17	88	5	50	35	0	0	64	0.94
13110578--13110636	18	3.3	18	74	23	61	49	1	0	49	1.11
13110568--13110627	18	3.4	16	72	18	57	48	1	0	50	1.11
13112312--13112347	2	18.0	2	100	0	72	0	50	0	50	1.00
13113782--13113842	25	2.4	26	75	10	63	59	1	0	39	1.08
13115375--13115729	61	5.9	59	84	7	405	34	11	5	48	1.62
13119126--13119732	305	2.0	305	86	3	864	37	11	13	37	1.82
13123076--13123123	25	1.9	25	86	0	69	39	35	8	16	1.79
13123082--13123125	12	3.6	12	77	17	54	40	31	9	18	1.81
13123113--13123357	80	3.1	79	76	1	249	44	22	8	24	1.80
13127634--13127663	15	2.0	15	93	0	51	36	0	16	46	1.47
13134306--13134340	2	18.0	2	88	5	54	45	0	2	51	1.16
13135577--13135614	17	2.2	18	85	4	51	76	0	5	18	0.97
13135577--13135614	18	2.2	19	86	13	55	76	0	5	18	0.97
13136948--13136975	2	14.0	2	100	0	56	50	0	0	50	1.00
13137043--13137077	18	1.9	18	94	0	61	31	0	2	65	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13137113--13137158	13	3.4	14	73	14	51	58	0	0	41	0.98
13137114--13137166	26	2.0	27	85	3	72	62	0	0	37	0.96
13138233--13138277	15	2.9	15	80	3	54	42	2	4	51	1.34
13138314--13138363	13	3.7	13	82	10	64	30	0	0	70	0.88
13138320--13138373	28	1.9	28	92	0	90	31	1	1	64	1.14
13138370--13138465	20	4.9	19	73	17	65	48	1	3	46	1.24
13142881--13142916	2	18.0	2	100	0	72	50	0	0	50	1.00
13143888--13143961	29	2.6	28	75	8	69	48	2	1	47	1.24
13146766--13146807	17	2.4	18	92	8	77	33	4	9	52	1.55
13148543--13148588	4	11.5	4	82	13	51	23	4	0	71	1.03
13148647--13148956	60	5.2	60	82	11	345	50	4	9	35	1.56
13148647--13148956	123	2.6	119	87	8	425	50	4	9	35	1.56
13148681--13148996	60	5.4	56	81	6	231	48	5	10	35	1.61
13153055--13153097	19	2.2	19	87	4	59	79	0	11	9	0.95
13154090--13154488	43	9.2	43	82	1	420	24	11	20	43	1.84
13154090--13154488	130	3.1	130	85	1	505	24	11	20	43	1.84
13155793--13156115	60	5.3	61	85	7	385	47	5	9	36	1.61
13156008--13156127	28	4.2	28	68	17	86	45	5	12	36	1.66
13166973--13166999	2	13.5	2	100	0	54	48	0	0	51	1.00
13169812--13169849	19	2.0	19	89	0	58	47	10	0	42	1.38
13171694--13171735	21	2.0	21	100	0	84	33	19	9	38	1.84
13181588--13181617	14	2.1	15	93	6	53	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13187675--13187714	12	3.1	13	79	13	55	47	0	0	52	1.00
13188731--13188782	27	1.9	27	88	0	77	50	0	1	48	1.12
13190044--13190177	40	3.3	40	88	4	155	35	5	11	47	1.64
13190041--13190268	120	1.9	122	81	8	279	36	7	9	46	1.65
13190122--13190276	80	1.9	81	84	1	204	37	7	9	45	1.65
13190069--13190265	40	4.9	40	77	7	177	37	7	10	45	1.65
13190920--13191094	50	3.5	50	77	6	158	42	12	9	36	1.74
13191432--13191469	20	2.0	20	94	5	69	68	7	13	10	1.39
13191434--13191475	7	6.3	7	81	8	52	64	9	14	11	1.50
13191477--13191516	20	2.0	20	90	0	62	37	12	15	35	1.85
13194259--13194361	50	2.1	47	82	7	118	27	15	5	51	1.66
13195259--13195296	2	19.0	2	100	0	76	50	0	0	50	1.00
13197608--13197652	20	2.4	18	80	20	56	46	2	0	51	1.13
13198898--13198934	2	18.5	2	94	0	65	2	48	0	48	1.15
13200611--13200649	20	2.0	20	90	10	62	33	10	7	48	1.66
13203796--13203859	4	17.0	4	78	15	57	71	1	0	26	0.94
13203761--13203835	23	3.4	22	85	7	89	61	0	0	38	0.96
13203775--13203847	19	4.2	18	72	14	64	65	0	0	34	0.93
13203796--13203847	23	2.3	23	83	3	70	69	0	0	30	0.89
13203907--13203987	35	2.3	35	85	6	94	24	48	11	16	1.78
13204205--13204246	14	3.0	14	83	10	50	78	11	9	0	0.96
13205323--13205361	16	2.4	17	91	4	62	51	28	0	20	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13207440--13207468	15	1.9	15	100	0	58	41	20	0	37	1.53
13213880--13213950	22	3.2	22	80	4	81	28	22	16	32	1.96
13213879--13214193	133	2.4	131	82	7	377	23	19	18	38	1.93
13214033--13214291	110	2.4	109	82	6	308	23	19	17	39	1.92
13214150--13214193	22	2.0	22	82	8	54	29	20	15	34	1.94
13214252--13214312	23	2.7	24	82	10	74	27	19	18	34	1.95
13214143--13214567	132	3.2	131	82	4	496	24	18	17	39	1.91
13213921--13214400	242	2.0	242	84	4	639	23	18	17	40	1.91
13214384--13214451	23	3.0	23	76	2	66	27	22	17	32	1.96
13214395--13214456	22	2.8	22	75	2	61	27	22	16	33	1.95
13214275--13214809	242	2.2	241	83	4	689	24	19	17	39	1.92
13214524--13214566	22	2.0	22	85	0	59	27	18	18	34	1.95
13213919--13214936	374	2.7	374	84	3	1309	23	19	17	39	1.92
13214467--13214667	109	1.8	110	85	5	282	22	20	17	39	1.93
13214633--13214698	22	3.0	22	90	0	105	27	25	19	27	1.99
13214577--13215058	133	3.6	131	82	4	533	24	20	17	36	1.94
13214890--13214958	23	3.0	23	79	6	79	24	23	23	28	1.99
13215506--13215563	25	2.4	24	88	2	80	22	39	12	25	1.89
13215667--13215700	14	2.4	14	90	5	50	76	8	8	5	1.15
13215990--13216014	12	2.1	12	100	0	50	16	36	16	32	1.90
13216778--13216814	17	2.2	17	90	4	58	54	24	0	21	1.45
13219956--13219990	18	1.9	18	88	0	52	40	5	2	51	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13220029--13220213	7	24.1	7	68	19	59	38	2	1	57	1.18
13219964--13220161	26	7.7	25	72	17	113	40	3	1	55	1.24
13220040--13220230	18	10.6	18	69	22	125	39	1	1	57	1.15
13220125--13220230	43	2.4	44	85	6	135	38	0	0	60	1.03
13220145--13220230	25	3.4	24	73	16	77	37	0	1	61	1.04
13220401--13220435	14	2.3	16	90	9	56	48	0	2	48	1.16
13222847--13223094	47	5.1	50	89	4	346	29	12	8	49	1.69
13222847--13223094	97	2.5	96	85	6	338	29	12	8	49	1.69
13223994--13224025	2	16.0	2	100	0	64	50	0	0	50	1.00
13226368--13226412	20	2.4	18	80	20	56	46	2	0	51	1.13
13227626--13227671	2	23.0	2	100	0	92	0	50	0	50	1.00
13227984--13228055	20	3.5	20	78	14	85	34	1	8	55	1.39
13230792--13230951	50	3.2	50	71	7	128	38	6	14	40	1.73
13234337--13234370	9	3.8	9	84	0	50	50	0	0	50	1.00
13234344--13234384	18	2.2	19	86	4	57	60	0	0	39	0.96
13234395--13234437	8	5.0	8	78	15	50	81	2	0	16	0.79
13234514--13234543	3	10.0	3	92	0	51	63	3	0	33	1.11
13234521--13234571	17	3.2	16	77	5	50	66	0	0	33	0.92
13234638--13234679	12	3.6	12	83	3	50	11	54	16	16	1.70
13236137--13236169	15	2.1	16	88	5	50	69	0	6	24	1.10
13247321--13247357	10	3.2	12	81	18	51	83	2	5	8	0.88
13248457--13248605	35	4.2	35	73	7	129	22	21	11	44	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13248398--13248752	74	4.8	73	82	2	354	19	23	14	42	1.88
13248487--13248751	147	1.8	146	86	1	352	20	22	13	43	1.87
13248974--13249014	12	3.2	12	86	10	55	56	2	0	41	1.13
13250172--13250231	28	2.1	28	81	12	68	66	1	1	30	1.11
13251672--13251720	25	2.0	25	95	0	89	28	42	8	20	1.80
13252950--13252998	16	3.0	16	79	5	53	51	24	0	24	1.49
13257101--13257161	26	2.4	26	91	2	97	52	0	1	45	1.10
13257263--13257569	15	19.3	15	65	20	81	40	2	0	55	1.21
13257249--13257580	18	16.4	20	69	22	137	39	3	0	56	1.21
13257298--13257548	131	2.0	123	80	9	281	41	3	1	54	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74