genome.fa.s212.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  36  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7793142--7793203	32	1.9	33	86	3	90	53	24	0	22	1.46
7793227--7793284	19	3.1	19	90	5	91	39	34	5	20	1.75
7793280--7793319	12	3.4	12	86	6	64	47	40	2	10	1.50
7793278--7793315	11	3.4	11	85	7	58	50	39	2	7	1.46
7793461--7793493	12	2.8	12	90	9	50	51	30	0	18	1.46
7793503--7793543	21	2.0	21	85	0	55	53	19	2	24	1.57
7796777--7796819	1	43.0	1	80	0	50	90	4	4	0	0.54
7796724--7796783	32	1.9	32	86	3	86	71	0	21	6	1.08
7796777--7796813	10	3.8	10	92	3	58	91	5	2	0	0.48
7796771--7796819	10	4.7	10	80	16	55	87	4	8	0	0.65
7796758--7796830	18	4.1	18	77	12	62	82	2	13	1	0.85
7796758--7796821	15	4.1	15	78	13	67	84	3	12	0	0.74
7797753--7797956	82	2.5	79	81	7	230	31	14	13	40	1.85
7797959--7798000	18	2.3	18	84	8	50	45	4	4	45	1.45
7797914--7798113	86	2.3	86	80	3	215	32	15	11	40	1.83
7798265--7798712	120	3.7	118	76	7	357	20	22	12	43	1.86
7799037--7799083	22	2.3	19	77	19	58	29	2	6	61	1.32
7799044--7799090	22	2.1	22	100	0	94	31	4	4	59	1.36
7799616--7799686	31	2.3	31	83	9	83	29	4	19	46	1.69
7799919--7799960	19	2.3	19	91	4	68	14	2	4	78	1.01
7800114--7800232	40	3.0	40	79	6	118	52	7	5	34	1.51
7800114--7800217	40	2.7	38	85	10	140	53	5	5	34	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7801329--7801379	24	2.1	25	81	3	59	45	11	9	33	1.74
7803147--7803200	3	18.3	3	90	3	83	66	3	0	29	1.09
7803442--7803515	29	2.5	28	86	6	94	55	2	5	36	1.37
7803850--7803916	23	2.9	22	73	6	62	37	4	0	58	1.19
7805880--7805926	13	3.1	15	82	11	53	65	10	0	23	1.23
7808530--7808567	16	2.3	17	90	4	60	39	10	10	39	1.74
7815334--7815414	24	3.3	23	78	11	83	66	4	2	25	1.24
7816595--7816646	22	2.4	21	87	3	77	65	3	5	25	1.32
7818992--7819033	2	21.0	2	80	9	50	45	2	2	50	1.27
7818980--7819030	22	2.3	23	86	10	79	39	1	3	54	1.30
7822819--7822874	16	3.5	17	73	11	55	62	0	1	35	1.06
7823245--7823274	12	2.5	12	88	0	51	46	0	0	53	1.00
7823342--7823378	20	1.9	20	88	5	58	48	0	0	51	1.00
7823340--7823384	20	2.2	20	80	7	56	48	0	0	51	1.00
7823844--7823901	23	2.4	24	83	11	66	51	1	1	44	1.21
7823859--7823901	22	1.9	23	85	4	61	53	2	0	44	1.13
7823870--7823983	36	3.1	36	86	8	158	55	0	0	42	1.12
7823870--7824000	32	3.8	32	78	16	127	54	0	0	44	1.11
7825777--7825809	17	1.9	17	100	0	66	78	3	0	18	0.87
7826163--7826212	10	5.0	10	90	0	64	66	16	0	18	1.26
7826236--7826278	20	2.1	20	86	4	59	34	39	2	23	1.67
7826654--7826703	3	16.7	3	87	0	73	66	0	4	30	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7827067--7827530	114	4.1	115	76	6	405	36	14	24	24	1.93
7827881--7828161	69	4.1	70	81	3	320	38	14	19	26	1.91
7827987--7828091	34	3.1	34	70	15	90	41	12	16	29	1.84
7827887--7828187	138	2.2	139	83	4	367	38	14	19	27	1.91
7829229--7829292	28	2.3	28	83	5	85	4	4	4	85	0.81
7829229--7829295	1	67.0	1	74	0	53	4	4	4	86	0.78
7829574--7829608	13	2.8	12	87	12	52	8	2	0	88	0.61
7831960--7832002	20	2.0	21	86	8	61	39	6	25	27	1.81
7833137--7833185	18	2.9	18	76	8	50	73	6	2	18	1.14
7833517--7833553	19	1.9	19	100	0	74	43	21	5	29	1.75
7834029--7834066	3	12.7	3	100	0	76	68	0	0	31	0.90
7834265--7834298	17	2.0	17	88	0	50	32	8	23	35	1.86
7835472--7835505	9	3.8	9	88	0	50	2	26	0	70	1.01
7841203--7841232	10	3.1	10	95	4	53	63	0	0	36	0.95
7845761--7845793	14	2.2	16	89	10	52	75	6	6	12	1.16
7847964--7848309	166	2.1	170	84	4	445	39	5	5	48	1.51
7848525--7848602	34	2.3	33	82	10	95	48	2	6	42	1.42
7848634--7848674	17	2.6	16	88	7	57	51	2	2	43	1.28
7849536--7849569	15	2.2	16	94	5	61	64	0	0	35	0.94
7850159--7850211	16	3.2	16	75	21	56	62	0	0	37	0.96
7857124--7857207	38	2.2	39	80	6	91	34	3	3	58	1.33
7857252--7857289	20	2.0	20	89	5	60	47	0	2	50	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7857730--7857777	21	2.2	22	88	3	71	50	2	2	45	1.25
7857724--7857779	22	2.5	22	82	5	69	48	1	1	48	1.22
7857746--7857785	21	2.0	21	85	5	55	50	0	2	47	1.14
7857890--7857954	19	3.5	19	77	6	53	50	10	1	36	1.47
7858004--7858056	17	2.9	17	83	10	61	71	3	0	24	1.02
7858190--7858244	17	3.2	17	84	5	58	32	7	1	58	1.36
7858280--7858346	17	3.8	18	80	11	68	32	1	0	65	1.02
7858321--7858409	39	2.3	38	79	9	99	37	1	4	57	1.26
7861071--7861118	19	2.6	19	83	9	55	56	6	0	37	1.25
7862961--7862989	13	2.1	14	93	6	51	72	0	6	20	1.07
7864315--7864496	58	3.1	57	85	6	215	39	11	6	43	1.66
7864472--7864520	24	2.0	24	92	0	80	46	6	14	32	1.69
7864495--7864667	62	2.9	58	80	7	220	40	12	6	40	1.69
7864722--7864755	15	2.3	15	90	10	52	70	0	8	20	1.13
7865655--7865715	17	3.4	17	80	12	68	63	0	4	31	1.15
7865665--7865830	4	43.0	4	68	17	61	65	1	3	30	1.15
7865665--7865830	25	6.4	25	71	18	87	65	1	3	30	1.15
7865668--7865810	67	2.2	65	80	10	164	65	0	3	30	1.15
7865838--7865881	13	3.3	14	87	9	65	77	2	0	20	0.88
7865839--7865887	20	2.5	18	81	15	53	75	2	2	20	1.00
7866068--7866492	41	9.9	42	83	7	380	42	20	12	25	1.86
7866064--7866492	83	5.0	84	81	9	379	43	20	11	24	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7867496--7867555	25	2.4	25	86	8	77	8	15	0	76	1.00
7867495--7867537	12	3.5	12	78	6	50	6	13	0	79	0.93
7867507--7867554	16	2.9	16	84	3	60	4	14	0	81	0.84
7868483--7868509	9	3.0	9	100	0	54	22	11	22	44	1.84
7874783--7874814	15	2.1	15	94	0	55	46	0	25	28	1.53
7877806--7878126	158	2.0	158	96	0	588	43	14	12	28	1.82
7878157--7878437	58	4.7	58	80	11	295	38	12	7	41	1.71
7878219--7878307	28	3.1	27	67	26	67	40	12	5	41	1.66
7878157--7878430	121	2.3	121	86	6	382	39	12	7	40	1.72
7878450--7878510	11	5.5	11	77	14	54	77	0	4	18	0.95
7878450--7878510	6	10.8	6	75	10	58	77	0	4	18	0.95
7878454--7878523	5	13.4	5	73	11	52	74	0	7	18	1.04
7878451--7878510	29	2.1	28	84	3	75	78	0	5	16	0.92
7879376--7879490	42	2.8	40	82	6	131	64	0	6	29	1.17
7879376--7879486	20	5.3	20	78	8	114	63	0	6	29	1.18
7879402--7879647	4	63.8	4	66	19	66	67	2	3	27	1.17
7879415--7879570	3	46.7	3	70	20	64	65	1	3	30	1.16
7879415--7879578	14	12.2	13	74	16	106	65	1	3	29	1.18
7879584--7879643	14	4.4	14	79	8	70	78	1	0	20	0.84
7879586--7879648	6	9.7	6	78	13	54	77	1	0	20	0.85
7879586--7879648	20	3.2	19	82	6	81	77	1	0	20	0.85
7879776--7880177	209	1.9	210	80	7	460	35	6	18	39	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7880110--7880164	26	2.1	26	83	6	67	36	3	18	41	1.68
7880131--7880400	61	4.5	61	74	12	195	40	4	17	37	1.70
7880325--7880601	153	1.8	154	81	3	353	38	5	16	38	1.72
7880495--7881008	129	3.9	130	77	8	383	40	5	14	38	1.70
7880505--7881559	130	8.1	131	76	9	631	41	6	13	38	1.69
7880505--7881526	386	2.6	384	79	7	978	41	6	12	39	1.70
7890770--7890878	26	4.2	26	73	10	80	20	0	33	45	1.51
7890773--7890821	13	3.7	13	75	5	53	14	0	34	51	1.43
7890792--7890923	38	3.4	37	77	10	104	25	0	30	44	1.54
7890792--7890919	13	9.8	13	68	19	54	24	0	29	46	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74