genome.fa.s212.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  68  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13451080--13451265	88	2.1	88	84	4	241	28	5	11	54	1.59
13451167--13451355	32	5.9	32	72	14	129	29	3	12	55	1.52
13451219--13451288	33	2.2	32	87	7	97	28	7	11	52	1.63
13451379--13451417	19	2.1	19	85	0	51	30	5	10	53	1.56
13451535--13451592	24	2.5	22	74	17	55	31	3	12	53	1.54
13451565--13451630	35	1.9	34	84	3	87	36	6	9	48	1.60
13451543--13451670	18	6.7	20	70	17	60	35	6	11	46	1.66
13458883--13458907	13	1.9	13	100	0	50	24	24	12	40	1.88
13459080--13459509	42	10.2	43	78	7	356	28	12	18	40	1.87
13459247--13459318	36	2.0	35	89	2	108	25	18	19	37	1.94
13459554--13459665	39	2.9	40	80	7	124	25	13	22	38	1.91
13459965--13460007	13	3.1	15	80	19	65	25	0	4	69	1.07
13460594--13460667	17	4.2	17	75	15	62	31	8	10	50	1.66
13460637--13460797	24	7.0	24	74	14	126	31	3	10	54	1.52
13460637--13460760	47	2.7	45	85	6	142	33	4	9	53	1.53
13460752--13460862	23	4.5	24	65	26	63	29	1	9	58	1.41
13460785--13460888	54	1.9	54	92	3	174	27	2	10	58	1.46
13460836--13460922	32	2.7	32	94	1	147	28	4	10	56	1.53
13460785--13460970	87	2.2	86	93	1	309	28	4	10	56	1.51
13460899--13460944	23	2.0	23	95	4	85	26	4	8	60	1.44
13460594--13460945	20	17.0	20	63	23	76	30	4	10	54	1.55
13460896--13460958	20	3.0	20	80	11	72	30	4	7	57	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13460922--13461107	32	6.4	31	69	20	123	31	5	9	54	1.54
13460868--13461048	56	3.2	56	87	3	242	31	5	8	54	1.54
13460927--13461111	87	2.1	87	85	6	241	31	5	9	53	1.55
13461014--13461079	31	2.1	32	88	8	100	31	3	9	56	1.46
13460868--13461081	111	1.9	111	82	7	265	31	5	8	54	1.53
13460754--13461149	143	2.8	142	82	7	475	30	4	9	55	1.53
13461375--13461445	35	2.0	37	86	10	103	39	5	5	49	1.50
13461376--13461453	18	4.2	20	79	12	94	39	5	7	47	1.54
13461444--13461478	14	2.6	14	90	4	54	28	14	17	40	1.88
13464215--13464256	22	1.9	22	90	0	66	52	9	2	35	1.47
13467596--13467635	15	2.6	16	78	21	50	47	0	2	50	1.14
13474954--13475166	108	2.0	107	94	0	372	32	23	11	32	1.90
13475472--13475517	21	2.2	21	84	0	56	30	23	21	23	1.99
13480876--13480992	59	2.0	59	89	0	180	41	20	9	29	1.83
13482566--13482650	42	2.0	41	80	14	95	44	5	3	45	1.45
13485412--13485469	28	2.1	28	96	0	107	34	17	29	18	1.94
13487190--13487224	2	17.5	2	100	0	70	51	0	0	48	1.00
13487696--13487786	34	2.6	34	75	5	85	40	6	9	42	1.64
13489755--13489785	13	2.4	13	94	0	53	51	0	0	48	1.00
13495692--13495720	14	2.1	14	100	0	58	86	0	13	0	0.58
13497484--13497510	3	9.0	3	100	0	54	33	0	0	66	0.92
13499235--13499259	10	2.5	10	100	0	50	20	12	0	68	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13501123--13501156	18	1.9	17	88	5	50	52	0	0	47	1.00
13510437--13510489	25	2.1	25	83	13	65	30	0	7	62	1.23
13510539--13510587	22	2.2	22	85	7	64	46	8	2	42	1.45
13511253--13511420	89	1.9	90	83	1	221	30	15	20	33	1.93
13515386--13515418	17	1.9	17	93	0	57	48	15	0	36	1.45
13521394--13521425	2	16.0	2	93	0	55	0	46	0	53	1.00
13526118--13526145	2	14.0	2	100	0	56	50	50	0	0	1.00
13533980--13534054	12	6.2	12	75	14	66	54	0	0	45	0.99
13533979--13534018	21	1.9	21	85	10	55	60	0	0	40	0.97
13533977--13534052	23	3.2	24	78	9	86	53	0	0	46	1.00
13540579--13540604	5	5.2	5	100	0	52	61	0	38	0	0.96
13545344--13545379	18	2.0	18	94	0	63	13	0	36	50	1.43
13545400--13545473	30	2.5	29	86	4	112	20	0	33	45	1.51
13545402--13545487	44	1.9	45	88	2	129	20	0	32	46	1.51
13545400--13545534	14	9.4	14	72	12	103	20	0	31	47	1.56
13545614--13545645	14	2.3	14	94	0	55	46	3	0	50	1.17
13548328--13548390	29	2.2	29	91	5	101	17	0	33	49	1.47
13548326--13548390	15	4.5	15	75	12	73	18	0	33	47	1.49
13551646--13551981	58	5.7	60	84	5	429	34	12	7	45	1.70
13551646--13551981	118	2.9	116	89	5	516	34	12	7	45	1.70
13552021--13552060	18	2.2	18	95	0	71	80	0	7	12	0.91
13552021--13552158	8	15.9	8	70	20	55	75	3	5	15	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13552110--13552162	24	2.2	25	86	6	74	79	5	1	13	0.99
13552111--13552162	12	4.4	11	81	13	59	80	3	1	13	0.93
13553151--13553243	8	11.8	8	69	14	50	60	6	0	33	1.22
13554648--13554700	15	3.4	16	78	19	58	5	15	0	79	0.91
13554648--13554710	15	4.0	16	74	24	53	6	17	0	76	0.99
13554886--13554929	21	2.1	21	83	8	54	50	6	18	25	1.71
13558609--13558881	58	4.7	57	87	7	374	34	11	6	47	1.66
13558667--13558755	27	3.2	27	63	20	65	37	14	5	42	1.69
13558918--13559040	9	12.2	9	67	20	50	76	3	4	16	1.07
13558968--13559035	4	17.0	4	78	6	59	75	4	1	19	1.06
13558983--13559041	12	4.8	12	82	13	68	83	1	1	13	0.81
13559544--13559593	26	2.0	24	84	7	64	42	20	4	34	1.70
13560146--13560184	16	2.5	15	87	8	51	66	5	0	28	1.12
13560131--13560189	9	5.9	10	81	18	54	62	6	0	30	1.21
13560775--13560856	41	2.0	41	92	0	137	35	8	24	31	1.86
13563832--13563882	26	2.0	26	84	0	66	60	7	5	25	1.47
13565011--13565048	15	2.5	15	91	0	58	13	0	34	52	1.40
13565094--13565149	14	3.9	14	75	9	58	26	1	23	48	1.61
13565077--13565149	30	2.4	32	84	6	89	26	1	26	46	1.61
13565369--13565429	3	20.3	3	86	6	88	32	3	0	63	1.10
13568278--13568331	25	2.2	25	93	3	92	44	1	0	53	1.11
13573927--13574016	27	3.1	27	67	23	76	40	15	5	38	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13574013--13574051	16	2.4	16	86	4	51	41	0	7	51	1.31
13573928--13574320	118	3.3	114	84	8	520	36	11	7	43	1.71
13573928--13574319	59	6.7	58	84	7	472	36	11	7	43	1.71
13573928--13574319	177	2.2	175	90	4	610	36	11	7	43	1.71
13574338--13574443	5	20.6	5	67	19	58	75	2	6	15	1.12
13574348--13574422	23	3.3	22	78	12	71	77	2	6	13	1.07
13574392--13574430	17	2.3	17	81	0	51	76	2	7	12	1.09
13574338--13574429	11	7.8	11	74	20	62	77	2	6	14	1.06
13574338--13574422	24	3.6	21	73	20	71	77	2	5	14	1.05
13575322--13575372	21	2.4	21	93	3	84	72	7	9	9	1.28
13575391--13575461	20	3.5	20	78	14	74	69	2	2	25	1.16
13575370--13575450	41	2.0	40	85	7	110	69	3	3	23	1.21
13575438--13575480	14	2.9	15	83	13	54	62	2	2	32	1.20
13575370--13575483	48	2.6	42	82	12	124	67	3	3	25	1.22
13575370--13575483	21	5.2	20	70	20	77	67	3	3	25	1.22
13575368--13575493	22	5.5	24	67	20	76	66	3	3	26	1.24
13585161--13585204	17	2.5	17	81	7	52	68	4	6	20	1.31
13586912--13587260	192	1.8	193	94	0	628	37	10	15	36	1.82
13588284--13588369	43	2.0	43	90	4	138	47	24	6	20	1.75
13589619--13589664	3	14.3	3	91	8	65	30	0	2	67	1.03
13589949--13590029	22	3.6	22	78	18	69	23	0	29	46	1.52
13589950--13590254	60	5.1	60	75	10	180	22	0	30	46	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13590093--13590129	17	2.2	17	90	0	56	27	0	27	45	1.54
13590181--13590295	13	8.0	14	70	21	78	18	0	34	46	1.49
13590111--13590311	16	13.5	14	67	19	72	19	0	35	44	1.55
13590187--13590254	7	9.4	7	73	17	59	16	0	36	47	1.47
13590127--13590254	59	2.2	59	87	2	177	18	0	33	46	1.55
13589988--13590254	30	8.9	30	76	4	189	22	0	30	46	1.57
13590203--13590300	43	2.3	43	84	7	128	18	0	34	46	1.49
13590245--13590308	30	2.1	30	94	0	110	20	0	34	45	1.51
13590179--13590320	73	2.0	72	87	4	205	17	0	35	46	1.54
13590696--13590755	12	4.9	12	77	2	57	30	6	5	58	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74