genome.fa.s212.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  53  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10645896--10645941	24	1.9	24	95	0	83	23	26	8	41	1.83
10646195--10646333	42	3.3	41	76	8	136	33	7	12	47	1.68
10646229--10646710	42	11.6	42	72	11	253	32	9	12	45	1.74
10646194--10646710	84	6.2	81	72	15	292	32	8	12	46	1.73
10646151--10646467	170	1.9	170	84	4	424	32	9	12	46	1.73
10646169--10646504	171	2.0	170	82	6	412	31	9	13	46	1.74
10646602--10646728	43	3.0	42	76	13	100	29	11	13	44	1.79
10649629--10649671	18	2.5	17	82	10	52	53	2	0	44	1.13
10649639--10649671	16	2.0	17	88	5	50	57	3	0	39	1.14
10653007--10653039	3	11.0	3	100	0	66	66	0	0	33	0.92
10653738--10653765	11	2.5	11	100	0	56	64	0	0	35	0.94
10653743--10653855	19	5.9	19	81	8	104	51	6	0	42	1.27
10653742--10653837	9	10.0	9	80	10	84	51	4	0	44	1.21
10653900--10653942	18	2.3	18	80	8	50	51	2	0	46	1.13
10653917--10653971	19	3.0	18	75	15	58	56	7	0	36	1.27
10654026--10654071	23	2.0	23	83	4	58	54	4	0	41	1.20
10654127--10654177	24	2.1	24	85	7	68	56	0	0	43	0.99
10654238--10654273	16	2.2	17	90	5	56	61	2	0	36	1.11
10654358--10654405	19	2.6	18	80	6	60	37	2	10	50	1.49
10654452--10654494	18	2.3	18	80	8	50	51	2	0	46	1.13
10654469--10654523	19	3.0	18	75	15	58	56	7	0	36	1.27
10654642--10654687	21	2.2	21	88	7	67	50	4	0	45	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10654683--10654733	24	2.1	24	85	7	68	56	0	0	43	0.99
10653848--10654957	556	2.0	552	96	1	2044	49	5	3	42	1.40
10654896--10655013	9	12.8	9	75	12	78	33	2	7	56	1.41
10654896--10654993	19	5.3	18	78	10	83	31	2	8	58	1.39
10654957--10655012	20	2.9	20	84	7	71	33	3	7	55	1.45
10655048--10655095	21	2.4	20	82	6	53	35	4	8	52	1.51
10655109--10655147	9	4.4	9	83	6	53	20	0	5	74	1.01
10655109--10655147	17	2.3	17	90	0	60	20	0	5	74	1.01
10661820--10662046	111	2.1	111	93	0	384	33	16	12	37	1.86
10671552--10671613	20	3.1	20	83	4	72	41	4	9	43	1.59
10672035--10672099	20	3.3	20	75	12	71	15	6	33	44	1.71
10672017--10672199	39	4.7	39	78	13	175	19	2	33	44	1.65
10672000--10672322	13	25.2	13	69	19	150	19	1	33	44	1.62
10672055--10672119	20	3.3	20	72	18	64	18	4	35	41	1.71
10672110--10672318	20	10.6	20	73	18	120	21	0	33	45	1.56
10672114--10672318	41	5.1	39	72	19	111	20	0	33	45	1.56
10672000--10672322	7	48.4	7	70	16	150	19	1	33	44	1.62
10672325--10672505	61	3.0	59	82	8	229	44	13	14	26	1.83
10682483--10682508	11	2.4	11	100	0	52	88	0	11	0	0.52
10690389--10690445	28	2.0	28	100	0	114	26	7	21	45	1.77
10693195--10693255	29	2.2	28	85	5	79	44	4	4	45	1.46
10693337--10693396	29	2.0	30	90	3	95	45	1	0	53	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10694059--10694107	2	24.5	2	100	0	98	48	0	51	0	1.00
10699075--10699132	25	2.3	26	76	8	66	50	1	1	46	1.22
10699074--10699115	21	2.0	21	85	4	57	52	2	2	42	1.27
10703590--10703627	9	4.3	9	86	6	51	18	7	2	71	1.23
10704422--10704464	19	2.3	18	88	4	59	18	2	4	74	1.10
10706616--10706653	9	4.3	9	86	6	51	18	7	2	71	1.23
10707462--10707506	5	8.8	5	83	11	56	20	0	2	77	0.87
10707453--10707501	19	2.6	19	87	6	64	20	0	4	75	0.96
10707453--10707525	30	2.4	29	80	15	76	19	0	4	76	0.94
10708226--10708421	64	3.1	63	70	11	168	38	13	13	34	1.84
10708152--10708421	126	2.1	126	84	2	355	40	14	13	32	1.85
10711711--10711762	25	2.1	25	92	0	86	42	26	9	21	1.83
10711720--10711772	12	4.3	12	83	4	61	43	28	9	18	1.81
10711711--10711753	13	3.4	13	87	6	70	41	27	11	18	1.85
10716549--10716591	21	2.2	20	91	8	70	2	23	0	74	0.93
10716549--10716592	20	2.1	21	91	4	72	2	22	0	75	0.92
10720234--10720286	24	2.1	25	86	13	74	49	9	1	39	1.46
10720275--10720362	38	2.4	37	90	5	133	55	6	1	36	1.34
10720275--10720347	22	3.6	22	78	21	104	56	6	0	36	1.26
10720333--10720366	15	2.4	14	85	9	50	55	5	2	35	1.39
10720653--10720721	25	2.8	25	68	16	61	62	18	0	18	1.33
10725400--10725451	26	2.0	27	84	3	70	34	15	9	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10725471--10725514	8	5.8	8	94	5	74	45	0	0	54	0.99
10725471--10725514	15	2.9	16	90	10	74	45	0	0	54	0.99
10725473--10725557	8	10.0	8	78	14	64	42	0	0	57	0.98
10725523--10725570	10	5.0	10	87	5	64	45	0	2	52	1.12
10725589--10725629	18	2.3	19	84	12	52	65	0	2	31	1.05
10728886--10728926	18	2.3	18	87	4	57	43	2	2	51	1.28
10733117--10733214	51	1.9	51	89	4	153	38	12	17	31	1.86
10738647--10738804	79	2.0	79	92	0	262	22	6	15	55	1.63
10739564--10739600	19	1.9	19	89	10	58	81	0	16	2	0.81
10739560--10739600	20	2.1	19	86	13	57	80	0	17	2	0.82
10740485--10740515	7	4.3	7	92	8	53	74	0	12	12	1.08
10740484--10740515	15	2.1	15	100	0	64	75	0	12	12	1.06
10742178--10742237	6	9.3	6	73	20	50	83	3	11	1	0.84
10742178--10742230	13	3.8	13	80	9	52	83	3	11	1	0.87
10742256--10742285	15	1.9	16	93	6	53	80	0	13	6	0.91
10742489--10742580	33	2.8	33	80	8	107	32	19	21	26	1.97
10742695--10742802	33	3.4	32	71	7	103	33	17	22	26	1.96
10742781--10742847	23	3.0	22	77	2	71	25	22	20	31	1.98
10742827--10742927	33	3.1	32	88	2	132	32	14	20	31	1.93
10742850--10742943	33	2.8	32	81	12	102	34	14	19	31	1.92
10743749--10743801	7	7.6	7	82	16	56	84	3	0	11	0.73
10743750--10743797	8	6.5	8	79	13	50	87	4	0	8	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10743750--10743807	15	4.1	14	82	8	64	86	3	1	8	0.76
10743749--10743801	13	4.3	13	80	9	67	84	3	0	11	0.73
10743750--10743818	23	3.1	21	80	12	66	85	4	2	7	0.81
10743751--10743801	6	8.5	6	83	16	54	86	3	0	9	0.70
10744190--10744216	3	9.0	3	100	0	54	33	0	0	66	0.92
10746189--10746235	24	1.9	24	86	4	67	65	2	0	31	1.04
10753411--10753447	3	12.7	3	94	5	67	29	0	0	70	0.88
10753455--10753529	7	9.9	7	71	21	53	0	20	5	74	1.00
10753493--10753547	21	2.6	22	75	16	62	3	25	0	70	1.03
10753492--10753540	18	2.8	17	79	11	55	2	24	0	73	0.94
10753678--10753723	23	2.0	24	91	4	76	34	21	17	26	1.95
10759319--10759351	10	3.4	10	87	4	50	27	12	9	51	1.69
10760806--10760855	23	2.2	23	82	10	59	24	14	20	42	1.88
10760987--10761041	12	4.8	12	76	17	55	20	1	9	69	1.25
10761917--10761968	21	2.4	21	75	12	52	19	5	3	71	1.22
10762149--10762179	16	1.9	16	93	0	53	22	6	19	51	1.69
10766185--10766241	13	4.5	13	71	8	55	78	0	12	8	0.95
10768712--10768897	74	2.5	77	83	6	222	34	11	20	33	1.89
10768960--10768993	15	2.3	15	94	0	59	26	2	26	44	1.69
10769472--10769503	15	2.1	16	88	11	50	71	6	3	18	1.20
10769440--10769520	23	3.4	22	73	13	63	75	6	1	17	1.07
10769595--10769640	22	2.1	22	92	4	76	73	4	2	19	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10771773--10771840	23	3.0	23	80	0	64	54	2	2	39	1.31
10771871--10771955	15	5.5	14	70	22	55	43	0	2	54	1.13
10771915--10771958	14	2.8	17	74	22	51	47	0	0	52	1.00
10771895--10771959	17	3.4	21	72	21	63	49	0	0	50	1.00
10771933--10771987	16	3.4	16	78	14	51	49	1	0	49	1.11
10772219--10772394	29	6.2	29	65	15	91	40	37	3	18	1.67
10772229--10772301	17	4.2	17	76	11	67	42	38	5	13	1.68
10772235--10772410	41	4.2	40	70	14	124	41	36	3	18	1.68
10772337--10772379	12	3.6	12	83	0	50	39	44	2	13	1.57
10772387--10772449	26	2.4	27	75	15	71	42	31	0	25	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74