genome.fa.s212.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  32  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7012261--7012293	15	2.1	16	88	5	50	63	0	0	36	0.95
7012488--7012538	14	4.0	13	76	21	54	27	0	1	70	0.98
7012534--7012579	15	2.9	15	84	15	58	41	0	6	52	1.27
7022986--7023045	25	2.4	26	84	15	74	80	1	13	5	0.96
7022986--7023042	23	2.4	25	80	13	59	80	1	12	5	0.95
7023977--7024019	20	2.1	20	82	4	50	32	0	16	51	1.45
7024524--7024561	16	2.4	16	90	0	58	55	21	0	23	1.44
7025615--7025650	17	2.1	17	90	10	56	38	13	0	47	1.44
7032855--7032908	21	2.5	21	75	3	54	59	0	0	40	0.98
7033183--7033229	14	3.0	15	77	20	51	51	4	0	44	1.21
7036025--7036061	15	2.7	15	84	16	53	70	0	0	29	0.88
7036232--7036264	13	2.6	13	85	4	50	60	0	0	39	0.97
7037420--7037452	17	2.0	16	94	5	57	21	0	0	78	0.75
7039424--7039509	30	3.0	29	73	21	83	73	1	1	24	0.98
7039421--7039506	21	4.0	21	72	22	63	70	1	1	26	1.01
7041244--7041284	10	4.0	10	84	6	55	70	0	0	29	0.87
7041252--7041300	11	4.3	11	80	10	53	67	0	0	32	0.91
7041248--7041299	24	2.1	25	92	3	88	67	0	0	32	0.91
7042547--7042646	43	2.4	42	86	3	137	46	14	9	31	1.75
7042609--7042867	102	2.5	102	82	3	297	42	16	9	30	1.80
7042633--7042907	51	5.4	51	78	6	227	42	17	9	31	1.80
7042630--7042907	102	2.7	101	80	6	294	42	17	8	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7043748--7043787	16	2.5	15	88	11	62	7	10	0	82	0.84
7047142--7047693	198	2.8	199	82	4	673	44	11	11	33	1.76
7059169--7059458	58	4.9	58	83	6	348	33	12	7	45	1.71
7059488--7059559	17	4.1	17	71	15	56	76	2	6	13	1.10
7059496--7059559	11	5.8	11	77	15	53	76	1	7	14	1.07
7059582--7059621	20	1.9	22	90	10	66	77	2	0	20	0.88
7060078--7060115	8	4.8	8	87	6	51	2	0	10	86	0.66
7060078--7060108	15	2.1	14	94	5	53	0	0	9	90	0.46
7060122--7060235	43	2.7	42	80	4	113	37	21	16	24	1.93
7060159--7060620	41	11.1	41	88	1	609	35	21	18	24	1.95
7061913--7061963	22	2.2	23	82	6	59	9	17	0	72	1.11
7061919--7061970	24	2.1	25	89	10	81	7	17	0	75	1.03
7065878--7066037	60	2.8	57	85	11	225	36	15	5	43	1.70
7065878--7066341	59	7.8	59	71	22	237	34	15	6	43	1.73
7066166--7066342	59	3.0	59	84	5	243	33	14	7	44	1.75
7066372--7066443	17	4.1	17	71	15	56	76	2	6	13	1.10
7066380--7066443	11	5.8	11	77	15	53	76	1	7	14	1.07
7066466--7066506	4	10.0	4	86	5	55	78	2	0	19	0.87
7067491--7067544	22	2.6	20	77	16	56	75	0	3	20	0.95
7067517--7067589	6	12.0	6	72	18	62	76	0	2	20	0.90
7067513--7067608	27	3.7	25	75	15	79	78	0	4	17	0.91
7067489--7067588	37	2.9	33	76	19	89	75	0	5	20	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7067517--7067597	11	7.3	11	77	15	78	76	0	3	19	0.93
7067519--7067603	37	2.4	37	81	15	106	76	0	4	18	0.96
7067529--7067608	32	2.5	30	77	15	81	77	0	5	17	0.94
7070113--7070155	8	5.4	8	86	8	52	81	0	0	18	0.69
7079827--7079865	15	2.4	16	83	16	53	25	7	5	61	1.44
7087038--7087069	15	2.1	15	94	0	55	25	18	12	43	1.85
7093030--7093186	78	2.0	78	98	0	305	29	10	19	41	1.84
7095775--7095839	11	6.0	11	73	10	62	61	12	0	26	1.31
7095777--7095839	22	3.0	22	75	13	69	60	12	0	26	1.33
7096215--7096307	17	5.2	16	71	19	51	32	2	3	62	1.23
7096231--7096310	18	4.4	17	72	12	61	35	2	2	60	1.24
7096248--7096376	9	13.6	9	69	23	52	34	5	2	58	1.34
7096326--7096404	20	4.2	19	73	17	67	27	6	1	64	1.25
7096452--7096505	17	2.9	19	72	10	58	29	1	1	66	1.12
7096473--7096548	9	8.6	8	72	16	53	30	1	2	65	1.14
7096483--7096579	9	10.7	9	70	14	65	34	2	1	62	1.13
7096535--7096598	30	2.1	30	88	5	94	35	1	1	60	1.15
7097269--7097310	20	2.2	20	86	4	59	33	7	21	38	1.81
7097350--7097410	31	2.0	31	86	0	86	34	6	13	45	1.69
7098313--7098399	14	6.2	14	75	16	74	48	0	3	48	1.18
7098324--7098408	43	2.0	43	81	9	102	50	1	4	43	1.30
7099563--7099643	40	2.0	40	100	0	162	46	12	17	23	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7102553--7102584	15	2.1	15	100	0	64	28	25	9	37	1.87
7107212--7107358	30	5.0	30	70	7	95	55	3	4	36	1.38
7107296--7107353	27	2.2	27	82	11	68	58	1	1	37	1.18
7109247--7109277	10	3.1	10	90	0	53	35	0	0	64	0.94
7109215--7109280	26	2.5	26	85	11	82	33	0	1	65	1.02
7115264--7115340	12	6.8	12	78	12	65	57	0	0	42	0.99
7115284--7115315	15	2.1	15	100	0	64	50	0	0	50	1.00
7116295--7116340	18	2.5	19	79	10	51	10	2	8	78	1.05
7118059--7118098	14	2.8	14	84	3	53	70	5	2	22	1.19
7118065--7118129	19	3.5	18	74	17	62	70	1	3	24	1.10
7118480--7118533	3	18.0	3	92	0	90	33	3	0	62	1.12
7118897--7118936	11	3.6	11	86	10	55	65	25	10	0	1.24
7119629--7119759	63	2.1	63	83	7	169	36	9	14	38	1.80
7119911--7120075	58	2.8	58	78	10	163	37	14	16	30	1.89
7121020--7121061	19	2.2	19	87	8	59	64	4	0	30	1.14
7131078--7131179	30	3.4	31	72	14	79	47	0	1	50	1.19
7131325--7131372	25	2.0	25	87	4	71	33	8	29	29	1.86
7136093--7136184	30	3.1	30	82	3	96	35	9	4	50	1.56
7136139--7136204	30	2.2	29	81	5	87	37	4	4	53	1.42
7136254--7136312	29	2.0	30	83	3	75	61	5	1	32	1.28
7140455--7140492	16	2.5	15	87	12	51	23	2	0	73	0.95
7142386--7142450	11	6.3	11	74	12	66	30	0	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7142385--7142446	28	2.3	27	83	8	72	30	0	0	69	0.89
7142861--7142913	14	3.7	14	75	5	52	1	13	3	81	0.92
7143444--7143468	13	1.9	13	100	0	50	0	12	0	88	0.53
7144106--7144171	28	2.3	29	85	14	93	6	13	0	80	0.89
7144106--7144171	29	2.3	28	82	14	82	6	13	0	80	0.89
7149706--7149752	3	15.7	3	100	0	94	65	0	0	34	0.93
7149751--7149813	3	20.7	3	93	3	108	33	0	33	33	1.58
7151220--7151246	14	1.9	14	100	0	54	70	0	14	14	1.17
7151717--7151756	22	1.9	22	85	10	57	75	2	15	7	1.14
7151927--7152008	7	11.4	7	68	19	53	79	1	15	3	0.94
7151927--7152010	18	5.1	15	74	21	62	79	1	15	3	0.92
7151913--7152007	6	16.0	6	68	14	54	76	1	17	4	1.00
7151906--7151971	25	2.8	23	82	8	87	74	0	19	6	1.03
7151952--7151998	19	2.3	21	89	7	71	80	2	14	2	0.89
7151907--7152006	24	4.2	24	80	11	80	76	1	18	5	1.03
7151968--7152014	24	1.9	24	86	4	67	80	2	12	4	0.94
7152338--7152379	10	4.1	10	84	3	57	85	4	7	2	0.80
7153097--7153143	22	2.1	22	84	0	58	31	23	21	23	1.98
7153377--7153503	32	3.9	31	77	4	101	40	22	11	25	1.87
7153377--7153468	33	2.8	32	81	12	98	42	21	9	26	1.84
7153387--7153634	96	2.6	95	72	8	223	38	19	14	27	1.90
7153523--7153641	32	3.8	32	76	8	118	37	17	13	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7153400--7153664	64	4.1	63	75	6	167	37	18	14	29	1.91
7156949--7157010	25	2.6	25	87	5	83	56	6	11	25	1.58
7158025--7158063	18	2.2	18	90	0	60	48	10	15	25	1.76
7158128--7158230	7	15.7	7	70	13	67	14	0	34	50	1.43
7158118--7158178	25	2.5	25	86	2	79	14	0	37	47	1.45
7158156--7158230	19	3.8	19	80	7	80	14	0	32	53	1.42
7163588--7163619	13	2.5	13	100	0	64	21	21	15	40	1.91
7176541--7176593	27	1.9	27	88	3	79	15	0	13	71	1.14
7177848--7177962	60	1.9	61	85	3	160	32	12	14	40	1.83
7177943--7178016	37	2.0	37	92	2	123	59	13	5	21	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74