genome.fa.s212.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  14  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3792967--3793027	31	1.9	32	84	15	83	80	0	8	11	0.91
3792984--3793031	16	3.1	16	79	11	55	83	0	6	10	0.81
3793719--3793762	21	2.1	21	82	0	52	27	15	15	40	1.88
3794096--3794147	26	2.0	26	92	7	88	26	15	17	40	1.89
3794059--3794186	68	1.9	69	87	8	190	25	14	13	46	1.81
3794168--3794528	45	8.1	45	76	12	279	25	12	15	46	1.81
3794224--3794471	131	1.9	132	85	7	344	27	14	15	42	1.85
3794192--3794530	176	1.9	176	86	2	484	25	12	15	45	1.82
3794744--3794784	11	3.9	11	81	18	52	80	0	2	17	0.82
3794747--3794784	20	1.9	20	89	10	60	81	0	2	15	0.80
3795606--3795646	5	7.8	5	94	2	64	17	0	2	80	0.82
3795653--3795964	119	2.6	118	85	8	413	47	5	10	36	1.62
3795661--3795982	58	5.4	58	81	8	341	47	4	10	36	1.60
3795950--3795981	14	2.2	15	94	5	57	50	6	0	43	1.27
3795949--3795987	14	2.7	15	84	15	55	51	7	0	41	1.31
3795899--3796111	73	2.9	73	85	6	281	50	6	8	34	1.59
3796043--3796160	60	2.0	60	83	6	150	50	7	9	33	1.63
3796692--3796737	24	2.0	23	83	12	58	23	8	4	63	1.42
3796934--3796989	23	2.4	24	80	17	64	75	7	7	10	1.20
3797828--3797881	21	2.5	22	85	5	67	31	0	0	68	0.90
3799506--3799556	27	1.9	26	88	4	75	52	1	3	41	1.31
3808451--3808520	28	2.7	25	77	14	70	47	1	1	50	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3808489--3808541	24	2.3	23	84	12	65	45	0	0	54	0.99
3811528--3811568	10	4.2	10	76	17	50	68	0	0	31	0.90
3811506--3811565	19	2.9	21	80	14	63	61	0	0	38	0.96
3811512--3811555	22	2.0	22	86	4	61	59	0	0	40	0.98
3820521--3820551	2	15.5	2	100	0	62	51	0	0	48	1.00
3830383--3830447	32	2.0	32	93	0	112	33	6	30	29	1.82
3840046--3840075	13	2.3	13	94	0	51	43	0	3	53	1.17
3840752--3840874	34	3.7	33	84	7	151	43	0	5	49	1.31
3840754--3840892	34	4.1	34	83	7	133	43	0	6	48	1.33
3841352--3841388	2	18.5	2	100	0	74	51	0	48	0	1.00
3855275--3855335	27	2.2	26	78	16	61	34	3	1	60	1.23
3855353--3855417	29	2.3	29	87	7	91	50	1	3	44	1.26
3855395--3855440	23	2.1	22	92	8	76	58	4	0	36	1.18
3859564--3859589	2	13.0	2	100	0	52	0	50	0	50	1.00
3865931--3865966	17	2.2	16	90	5	54	41	0	2	55	1.14
3865974--3866005	17	1.9	16	93	6	55	68	6	0	25	1.12
3866349--3866378	14	2.2	13	94	5	51	76	16	6	0	0.99
3867059--3867105	18	2.7	17	75	18	51	19	0	6	74	1.03
3876000--3876329	110	3.0	108	81	4	401	23	16	18	41	1.90
3876226--3876412	88	2.1	87	81	4	216	24	17	17	40	1.91
3876318--3876804	131	3.7	132	86	3	583	24	21	16	37	1.93
3876664--3876723	22	2.7	22	80	10	77	28	28	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3877091--3877144	22	2.5	22	84	0	63	24	31	18	25	1.97
3877102--3877145	22	2.0	22	90	0	70	22	31	22	22	1.98
3876900--3877233	183	1.8	183	88	1	517	23	22	17	36	1.95
3877225--3877264	21	1.9	21	85	10	55	25	25	22	27	2.00
3877113--3877353	109	2.2	110	83	5	299	21	20	17	39	1.92
3877347--3877427	36	2.2	36	82	0	99	20	17	16	45	1.85
3877650--3877684	16	2.2	16	90	10	54	42	0	2	54	1.15
3877692--3877724	17	1.9	17	93	0	57	69	6	0	24	1.10
3878038--3878067	14	2.2	13	94	5	51	76	13	6	3	1.11
3878585--3878625	22	1.9	22	90	5	66	29	29	21	19	1.98
3879117--3879172	16	3.5	16	70	7	51	48	28	0	23	1.51
3879123--3879171	15	3.2	15	76	2	53	48	30	0	20	1.50
3879146--3879219	39	1.9	38	91	0	112	48	25	0	25	1.51
3886466--3886512	23	2.0	23	84	12	60	51	6	0	42	1.27
3888535--3888875	144	2.4	144	81	7	399	34	11	11	42	1.77
3897919--3897972	27	2.0	27	100	0	108	22	11	11	55	1.66
3898623--3898682	25	2.5	23	78	5	66	18	18	15	48	1.81
3902333--3902376	22	2.0	22	91	8	72	31	9	13	45	1.75
3903340--3903369	11	2.7	11	94	0	51	50	26	3	20	1.64
3903588--3903655	23	2.9	22	75	14	73	25	36	7	30	1.83
3903588--3903693	50	2.2	49	84	6	135	23	36	6	33	1.81
3903588--3903713	50	2.6	50	82	5	132	22	36	7	33	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3903707--3903791	31	2.7	31	92	0	143	25	25	21	27	1.99
3904274--3904430	52	3.0	52	82	7	178	24	25	9	40	1.85
3904455--3904496	11	3.8	11	93	0	66	47	28	2	21	1.63
3904455--3904497	22	2.0	22	95	0	77	46	27	2	23	1.64
3907580--3907610	12	2.6	12	100	0	62	12	9	25	51	1.70
3907617--3907664	3	16.0	3	77	0	51	6	27	35	31	1.82
3907632--3907664	9	3.7	9	95	0	57	3	24	39	33	1.71
3908207--3908241	15	2.3	15	90	0	52	0	25	34	40	1.56
3908438--3908468	15	2.1	15	93	0	53	0	9	38	51	1.35
3926000--3926032	2	16.5	2	100	0	66	51	0	0	48	1.00
3927149--3927207	31	1.9	31	100	0	118	37	13	20	28	1.91
3929082--3929171	27	3.3	27	90	0	126	34	41	4	20	1.72
3930311--3930345	18	1.9	18	88	11	54	22	51	2	22	1.61
3947478--3947532	28	2.0	28	88	0	83	16	23	10	49	1.77
3950583--3950619	9	3.9	9	86	13	56	35	2	0	62	1.10
3950584--3950632	20	2.5	20	77	12	55	40	2	0	57	1.10
3950671--3950721	23	2.3	21	81	15	59	43	0	0	56	0.99
3951451--3951494	12	3.8	12	80	20	58	59	0	9	31	1.29
3951453--3951498	22	2.1	22	92	8	76	58	0	8	32	1.28
3952035--3952096	16	3.7	16	70	10	52	53	0	1	45	1.10
3952114--3952223	40	2.5	44	77	15	122	40	2	0	56	1.14
3952130--3952197	20	3.5	20	74	20	63	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3952211--3952247	9	3.9	10	86	6	51	45	10	0	43	1.39
3952211--3952247	19	1.9	19	88	0	56	45	10	0	43	1.39
3953111--3953160	24	2.1	24	85	7	66	50	0	0	50	1.00
3954218--3954256	12	3.2	12	85	3	51	51	0	0	48	1.00
3959522--3959546	13	1.9	13	100	0	50	16	20	0	64	1.30
3980954--3980996	3	14.0	3	95	4	77	67	0	0	32	0.91
3984385--3984415	2	15.5	2	100	0	62	51	0	0	48	1.00
3985753--3985782	12	2.5	12	94	0	51	30	6	20	43	1.77
4001783--4001844	20	3.0	22	73	21	71	75	0	22	1	0.88
4002299--4002327	11	2.5	12	88	11	51	24	6	0	68	1.13
4003022--4003093	15	4.6	16	73	11	69	50	27	0	22	1.50
4003165--4003224	15	4.0	15	79	14	70	48	28	1	21	1.60
4003346--4003389	15	2.9	15	80	6	54	52	29	2	15	1.55
4004536--4004569	16	2.2	16	89	5	52	73	2	0	23	0.97
4005813--4006095	147	2.0	144	81	7	333	45	12	6	35	1.69
4008569--4008605	17	2.2	17	90	4	58	67	5	0	27	1.12
4014252--4014277	12	2.2	12	100	0	52	42	0	0	57	0.98
4024308--4024353	22	2.1	21	80	7	56	39	17	8	34	1.80
4029656--4029698	19	2.3	19	92	8	70	39	4	23	32	1.75
4031963--4031993	2	15.5	2	100	0	62	48	0	0	51	1.00
4034987--4035067	30	2.8	28	78	14	83	37	6	1	55	1.33
4035000--4035067	29	2.3	30	87	7	95	38	4	1	55	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4037356--4037388	2	17.0	2	87	6	50	48	3	0	48	1.17
4054106--4054135	15	2.0	15	93	0	51	43	20	6	30	1.77
4054986--4055125	61	2.3	62	78	3	158	47	6	9	37	1.62
4055598--4055732	63	2.1	63	81	8	150	47	8	6	37	1.60
4056039--4056076	13	2.7	14	88	8	51	50	10	5	34	1.59
4056905--4057067	81	2.0	81	95	0	290	38	14	16	31	1.88
4058426--4058452	3	9.0	3	100	0	54	0	0	66	33	0.92
4059224--4059278	6	9.2	6	93	0	74	50	9	38	1	1.45
4060319--4060473	18	8.6	18	72	24	105	56	1	0	41	1.15
4060341--4060457	61	1.9	62	84	8	159	55	2	0	41	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74