genome.fa.s212.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  21  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5178889--5178975	7	13.0	7	77	18	80	31	0	0	68	0.89
5188677--5188722	18	2.9	17	75	24	55	52	15	0	32	1.43
5194163--5194217	27	2.0	28	92	3	94	29	3	5	61	1.35
5199784--5199820	18	2.1	18	94	0	65	29	13	16	40	1.86
5208725--5208776	19	2.7	19	76	5	52	30	7	5	55	1.52
5208701--5208787	29	3.0	29	75	6	86	28	8	9	54	1.61
5221182--5221252	36	2.0	36	88	0	106	43	23	8	23	1.81
5222631--5223095	233	2.0	233	88	1	702	46	8	7	38	1.62
5225546--5225605	28	2.1	27	84	9	75	51	1	0	46	1.10
5225577--5225616	20	2.0	21	90	5	64	45	0	0	55	0.99
5233165--5233260	46	2.1	47	88	2	140	46	9	4	39	1.55
5234903--5235072	85	2.0	85	94	0	295	28	18	18	33	1.95
5235057--5235136	38	2.1	38	90	0	124	33	13	15	37	1.86
5239552--5239625	36	2.1	36	89	5	114	33	13	12	40	1.82
5239961--5239994	17	1.9	17	88	5	50	26	11	2	58	1.47
5242457--5242494	19	2.0	20	85	10	53	31	5	7	55	1.51
5241273--5243071	979	1.8	983	86	3	2620	31	10	13	43	1.78
5243898--5243964	29	2.3	30	89	2	100	17	23	25	32	1.97
5251086--5251137	27	1.9	27	84	7	70	36	3	23	36	1.73
5252465--5252593	64	2.0	64	92	3	215	36	9	20	33	1.85
5253066--5253138	37	2.0	37	86	0	101	28	19	13	38	1.90
5257163--5257227	28	2.3	27	78	5	67	23	20	16	40	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5257576--5257613	19	2.0	20	85	10	53	31	5	7	55	1.51
5259016--5259113	30	3.3	30	95	0	169	16	26	26	30	1.97
5267243--5267273	2	15.5	2	93	0	53	48	0	3	48	1.17
5268143--5268178	13	2.8	13	95	0	63	25	5	27	41	1.77
5275863--5275934	32	2.2	33	80	11	87	44	13	4	37	1.64
5276570--5276622	28	1.9	27	88	11	81	52	11	3	32	1.55
5276649--5276724	23	3.3	23	68	15	66	40	17	7	34	1.78
5281213--5281250	19	2.0	20	94	5	69	52	13	5	28	1.61
5282563--5282660	24	4.1	24	85	1	117	68	9	0	22	1.18
5282570--5282666	6	16.3	6	85	2	106	67	8	1	23	1.24
5283168--5283205	20	1.9	20	100	0	76	50	10	5	34	1.59
5283893--5283953	24	2.6	24	86	2	79	65	11	3	19	1.38
5283892--5283953	30	2.1	29	84	3	79	64	11	3	20	1.40
5284155--5284250	48	2.0	48	87	0	138	41	14	14	29	1.85
5286987--5287226	60	4.1	58	85	3	340	38	10	6	44	1.65
5287254--5287291	19	2.0	19	85	10	51	78	0	2	18	0.86
5287266--5287295	5	6.2	5	96	3	53	80	0	0	20	0.72
5288194--5288274	24	3.3	24	87	5	110	62	0	3	33	1.12
5293928--5293989	3	20.7	3	100	0	124	66	0	0	33	0.92
5293988--5294014	3	9.0	3	100	0	54	33	0	0	66	0.92
5298701--5298739	14	2.7	14	88	4	51	10	12	0	76	1.01
5298784--5298817	3	11.3	3	93	0	59	32	29	0	38	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5298781--5298822	12	3.4	12	90	3	66	33	23	0	42	1.55
5298919--5298962	21	2.1	21	86	0	61	36	6	11	45	1.67
5303439--5303477	19	2.2	17	86	13	53	82	2	7	7	0.94
5303439--5303499	27	2.3	25	78	10	68	80	1	9	8	0.98
5303433--5303497	17	3.8	17	74	10	53	76	1	12	9	1.07
5303784--5303842	31	1.9	31	85	0	82	79	1	13	5	0.97
5303788--5303844	12	4.4	12	76	20	53	78	1	14	5	0.99
5304953--5305112	45	3.6	44	74	5	133	37	10	15	36	1.82
5304921--5305120	90	2.2	90	83	4	233	36	9	15	39	1.79
5305409--5305451	18	2.4	18	80	7	52	30	11	16	41	1.83
5305448--5305481	17	1.9	18	88	5	52	38	14	11	35	1.83
5305527--5305581	17	3.3	16	82	9	74	30	14	16	38	1.89
5305477--5305589	18	6.6	17	77	8	95	32	11	13	42	1.80
5305530--5305708	53	3.4	53	77	11	145	37	10	11	40	1.74
5305609--5305727	35	3.4	35	78	6	125	42	8	5	43	1.59
5305609--5305722	36	3.2	35	78	5	113	43	7	6	42	1.58
5305609--5305716	17	6.2	17	72	5	81	43	8	5	42	1.58
5305609--5305751	70	2.1	69	81	6	164	43	9	6	41	1.62
5305722--5305803	40	2.0	41	85	2	112	35	17	6	41	1.74
5306156--5306203	16	3.0	16	71	0	51	79	4	8	8	1.06
5307271--5307349	13	6.3	13	71	12	58	11	11	0	77	1.00
5308648--5308690	14	3.1	14	80	12	61	48	13	9	27	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5308719--5308773	13	4.5	13	72	23	57	52	12	7	27	1.65
5308777--5308823	20	2.4	20	89	3	69	51	14	4	29	1.62
5309048--5309139	6	16.3	6	74	10	61	25	1	8	65	1.28
5309051--5309134	11	7.5	11	74	6	62	26	1	8	64	1.29
5309048--5309138	33	2.7	33	80	10	103	25	1	8	64	1.29
5309711--5309794	23	3.9	23	76	18	83	29	7	11	51	1.65
5309731--5310041	41	7.6	41	85	1	408	30	7	11	50	1.65
5310013--5310093	32	2.5	32	80	9	85	28	4	13	53	1.61
5310050--5310111	32	1.9	32	90	0	97	25	0	14	59	1.35
5310116--5310153	19	2.0	19	89	0	58	28	5	13	52	1.61
5310252--5310316	18	3.6	17	76	16	60	33	7	12	46	1.70
5310983--5311033	27	2.0	25	84	7	66	74	3	9	11	1.19
5312083--5312194	6	19.3	6	80	5	88	65	8	0	25	1.27
5312083--5312194	29	3.9	29	75	12	113	65	8	0	25	1.27
5312638--5312662	5	5.0	5	100	0	50	20	0	0	80	0.72
5314042--5314089	23	2.1	23	84	7	62	66	0	2	31	1.03
5314366--5314630	30	9.1	31	72	12	127	45	31	2	20	1.64
5314457--5314597	14	9.9	13	70	19	77	48	30	2	19	1.60
5314604--5314636	14	2.4	14	94	0	57	54	30	0	15	1.41
5314376--5314621	58	4.2	58	81	3	235	46	30	2	20	1.63
5314692--5314737	14	3.2	14	78	3	56	54	30	0	15	1.41
5314670--5314716	21	2.2	21	84	0	58	53	23	2	21	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5316058--5316108	1	51.0	1	90	0	57	0	1	7	90	0.53
5316478--5316620	55	2.6	54	81	7	148	45	6	12	35	1.68
5317044--5317078	18	1.9	18	88	11	54	14	0	2	82	0.77
5317810--5318013	105	2.0	102	80	11	227	46	2	1	48	1.28
5318005--5318046	18	2.6	16	79	17	50	33	2	2	61	1.21
5319358--5319401	22	2.0	22	82	8	54	11	2	6	79	1.01
5324487--5324542	24	2.4	22	77	17	60	5	12	3	78	1.05
5325707--5325739	16	2.0	16	94	5	57	39	0	0	60	0.97
5327848--5327908	14	4.3	14	74	16	54	19	1	4	73	1.10
5328745--5328799	21	2.6	21	88	5	76	23	0	5	70	1.07
5330375--5330907	22	24.4	22	72	6	152	46	5	9	38	1.60
5330912--5330998	22	4.0	22	79	2	88	45	11	6	35	1.67
5331214--5331254	22	2.0	21	90	9	66	53	14	0	31	1.41
5333437--5333487	3	17.0	3	95	0	93	64	0	1	33	1.05
5333527--5333575	21	2.3	20	80	13	55	79	6	2	12	0.99
5333505--5333590	22	4.0	20	75	11	57	77	4	3	13	1.05
5333539--5333591	9	5.8	9	76	12	54	83	5	0	11	0.81
5333527--5333593	13	4.8	14	75	14	59	82	4	1	11	0.89
5334577--5334624	22	2.2	22	96	0	87	35	8	12	43	1.73
5340812--5340862	25	2.0	24	96	0	75	31	9	15	43	1.80
5342191--5342265	37	2.0	38	94	2	134	20	9	2	68	1.30
5343534--5343593	29	2.1	28	81	6	68	45	3	1	50	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5350846--5350878	2	16.5	2	100	0	66	51	0	48	0	1.00
5353824--5353905	21	3.8	22	73	18	66	43	1	1	53	1.16
5357653--5357721	31	2.2	31	82	10	79	49	4	0	46	1.21
5358396--5358433	19	2.1	18	90	5	58	47	0	0	52	1.00
5358476--5358525	15	3.4	15	78	15	59	40	0	0	60	0.97
5358555--5358652	21	5.7	18	76	18	95	43	2	0	54	1.12
5358786--5358874	43	2.1	44	79	10	103	43	4	1	50	1.29
5358788--5358874	21	4.1	21	82	2	93	43	4	1	50	1.30
5363159--5363224	32	2.1	32	94	0	114	33	22	7	36	1.83
5366068--5366142	33	2.3	33	78	13	84	56	1	0	42	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74