genome.fa.s212.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  18  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4600108--4600135	2	14.0	2	100	0	56	50	0	0	50	1.00
4600634--4600659	2	13.0	2	100	0	52	50	0	50	0	1.00
4613616--4613688	33	2.2	33	83	9	87	16	27	10	45	1.81
4614347--4614371	13	1.9	13	100	0	50	40	4	0	56	1.18
4615253--4615285	17	1.9	17	93	0	57	45	0	6	48	1.27
4618267--4618304	2	19.0	2	100	0	76	50	0	0	50	1.00
4618837--4618862	8	3.2	8	100	0	52	76	0	0	23	0.78
4619950--4619995	17	2.8	17	83	6	51	50	0	4	45	1.21
4622972--4623005	2	17.0	2	100	0	68	50	0	0	50	1.00
4627056--4627082	2	13.5	2	100	0	54	51	0	48	0	1.00
4627653--4627688	2	18.0	2	94	0	63	50	2	0	47	1.15
4633240--4633422	37	4.5	37	69	26	113	22	4	1	71	1.12
4633276--4633415	41	3.3	42	70	21	114	22	5	1	70	1.14
4633292--4633401	43	2.6	41	76	13	114	22	5	1	70	1.18
4633316--4633381	29	2.2	30	83	5	80	21	6	1	71	1.16
4634191--4634270	4	20.8	4	84	7	64	22	0	1	76	0.86
4634185--4634310	5	25.8	5	79	16	92	19	1	0	77	0.90
4634189--4634314	41	3.2	40	82	9	152	20	1	0	76	0.91
4634185--4634314	16	7.9	16	73	12	79	20	1	0	77	0.89
4634195--4634314	46	2.7	44	85	8	145	20	1	0	76	0.92
4634328--4634779	58	7.8	57	87	5	577	44	8	11	35	1.72
4634328--4634779	234	1.9	232	86	5	644	44	8	11	35	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4638307--4638692	191	2.0	191	96	0	718	44	13	20	21	1.86
4638957--4639006	16	3.1	16	85	2	55	82	0	10	8	0.86
4640861--4641138	45	6.5	43	78	10	254	24	15	19	41	1.89
4640882--4641060	44	4.2	42	82	11	222	25	14	17	41	1.88
4640792--4641085	42	7.0	41	75	14	181	24	14	20	40	1.89
4640890--4641136	83	2.9	85	78	9	238	24	15	19	40	1.91
4641363--4641419	8	6.5	8	79	15	60	17	1	1	78	0.91
4641456--4641534	22	3.6	20	76	21	70	21	5	1	72	1.11
4641459--4641514	18	3.1	17	85	14	69	19	5	1	73	1.12
4641436--4641500	29	2.2	29	83	5	78	18	6	1	73	1.11
4641828--4641857	14	2.1	15	93	6	53	26	3	6	63	1.35
4641818--4641866	24	2.0	23	88	7	71	30	2	8	59	1.38
4642332--4642357	4	6.5	4	100	0	52	23	0	0	76	0.78
4642390--4642495	5	20.2	5	83	16	119	17	3	0	78	0.90
4642383--4642495	22	4.7	23	81	17	133	18	3	0	77	0.90
4642514--4643020	58	8.8	58	86	7	692	44	7	11	36	1.69
4642512--4643019	172	2.9	172	92	3	788	44	7	10	36	1.69
4645052--4645091	19	2.1	19	100	0	80	55	25	10	10	1.64
4645260--4645306	24	2.0	24	100	0	94	34	10	17	38	1.84
4647262--4647287	12	2.2	12	100	0	52	46	0	0	53	1.00
4650892--4650930	13	2.8	13	88	7	51	41	0	0	58	0.98
4650891--4650937	15	3.2	15	82	14	62	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4650929--4650971	12	3.6	12	77	0	50	48	2	0	48	1.14
4650915--4650971	24	2.4	24	91	2	89	45	1	0	52	1.11
4654817--4654841	2	12.5	2	100	0	50	52	0	48	0	1.00
4655679--4655717	2	19.5	2	100	0	78	51	0	0	48	1.00
4655777--4655822	3	15.3	3	100	0	92	67	0	0	32	0.91
4670905--4670944	21	1.9	21	84	0	53	57	7	0	35	1.27
4675053--4675089	16	2.4	16	95	4	67	59	0	0	40	0.97
4675059--4675105	24	1.9	25	86	4	69	65	0	0	34	0.93
4675056--4675143	11	7.1	11	71	20	50	56	0	0	43	0.99
4683576--4683603	12	2.3	12	100	0	56	60	10	14	14	1.58
4685404--4685428	13	1.9	13	100	0	50	16	16	28	40	1.89
4696795--4696841	16	2.9	16	90	0	76	57	10	8	23	1.60
4704774--4704983	109	2.0	104	90	6	332	37	19	13	30	1.89
4708102--4708139	17	2.1	17	90	9	58	73	0	0	26	0.83
4708195--4708238	23	1.9	23	100	0	88	68	13	2	15	1.31
4709590--4709626	3	12.3	3	100	0	74	67	0	0	32	0.91
4709619--4709696	19	3.9	18	69	21	50	76	2	6	14	1.08
4710976--4711218	43	5.7	42	80	3	227	43	13	15	28	1.84
4710983--4711218	128	1.8	128	88	3	359	43	13	15	27	1.84
4720569--4720610	17	2.4	17	80	11	50	73	4	2	19	1.12
4721463--4721504	19	2.2	19	86	4	57	83	0	7	9	0.81
4721509--4721608	3	36.0	3	70	15	54	56	4	5	35	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4721512--4721615	15	6.6	15	70	21	61	56	3	4	34	1.39
4721509--4721575	20	3.3	19	78	15	64	53	4	4	37	1.41
4721509--4721578	23	3.3	21	79	16	65	54	4	4	37	1.40
4721547--4721608	30	2.1	30	93	3	108	58	3	6	32	1.40
4721920--4722133	110	1.9	110	80	2	241	41	12	21	24	1.87
4723410--4723556	49	2.9	49	82	8	161	18	23	8	49	1.75
4734059--4734176	8	14.2	8	67	10	67	75	3	1	19	1.03
4734060--4734191	17	7.8	16	69	23	67	75	3	3	18	1.07
4734085--4734170	15	5.8	15	71	15	63	73	4	1	20	1.08
4734059--4734137	25	3.2	24	81	13	74	74	2	1	21	1.01
4734075--4734171	31	3.2	30	76	14	92	74	4	1	20	1.05
4734147--4734182	19	1.9	18	88	5	54	80	2	2	13	0.93
4735000--4735102	3	36.3	3	75	14	103	61	2	1	33	1.22
4737399--4737461	33	1.9	33	86	0	90	57	6	3	33	1.40
4737517--4737562	21	2.0	24	84	12	62	69	2	2	26	1.11
4743199--4743279	44	1.9	44	87	7	123	48	3	1	46	1.27
4744113--4744155	21	2.0	23	86	9	63	18	2	6	72	1.19
4753738--4753795	23	2.6	22	81	13	66	34	0	0	65	0.93
4754780--4754842	32	2.0	32	83	0	81	46	0	1	52	1.10
4754930--4754986	19	3.1	19	75	19	66	29	7	0	63	1.21
4754913--4754959	24	2.0	24	82	0	58	36	4	0	59	1.17
4762349--4762385	2	18.5	2	100	0	74	0	48	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4762385--4762428	2	22.0	2	90	0	70	50	0	4	45	1.22
4766124--4767024	225	4.0	225	89	2	1339	40	18	10	30	1.84
4766124--4767018	449	2.0	449	88	2	1343	41	18	10	29	1.84
4769731--4769797	15	3.9	16	75	19	55	52	2	2	41	1.32
4769958--4770065	56	1.9	56	88	0	162	37	12	9	39	1.76
4786786--4786810	11	2.3	11	100	0	50	0	8	0	92	0.40
4790809--4791006	76	2.6	76	80	10	201	47	5	7	39	1.54
4792460--4792575	30	3.9	30	74	6	101	47	3	9	39	1.53
4792520--4792631	30	3.8	28	79	10	93	50	3	7	38	1.47
4795963--4796057	36	2.6	36	85	3	129	30	15	5	48	1.67
4796815--4796862	25	1.9	25	82	0	60	33	2	2	62	1.18
4797380--4797517	7	17.9	7	66	22	55	19	0	30	49	1.54
4797380--4797551	16	10.9	16	76	17	155	21	0	29	48	1.55
4797382--4797560	33	5.6	30	75	16	114	20	0	30	48	1.54
4797961--4798001	21	1.9	21	85	5	55	70	0	2	26	0.99
4799112--4799170	15	4.1	14	74	24	52	33	1	0	64	1.04
4799099--4799161	27	2.2	28	86	10	85	28	3	0	68	1.05
4799314--4799753	110	4.0	109	81	2	423	37	17	20	23	1.93
4799594--4799637	22	2.0	22	86	0	61	29	20	20	29	1.98
4799716--4799777	23	2.7	23	85	2	81	29	16	25	29	1.96
4799594--4800020	133	3.2	132	84	1	534	37	18	20	23	1.94
4799860--4799911	23	2.3	23	82	0	68	36	23	17	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4799865--4800109	110	2.2	109	84	4	296	38	17	20	23	1.93
4799899--4800122	109	2.0	110	83	4	283	39	16	19	24	1.92
4800092--4800134	22	2.0	22	85	0	59	30	20	23	25	1.99
4799983--4800281	131	2.3	130	80	5	318	36	17	21	25	1.95
4800209--4800318	22	5.0	22	73	6	62	33	20	18	28	1.96
4800048--4800282	130	1.8	130	82	3	303	35	17	20	25	1.95
4800247--4800304	21	2.6	22	78	13	66	34	20	13	31	1.92
4800385--4800493	22	4.9	23	75	10	84	34	19	18	27	1.95
4800438--4800476	21	1.9	20	94	5	69	33	17	20	28	1.96
4800576--4800631	23	2.5	23	88	8	71	32	16	19	32	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74