genome.fa.s212.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168037.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_29, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14313602

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   

This is table  27  of  74  ( 8765 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6179256--6179331	25	3.1	24	72	7	73	44	0	1	53	1.08
6179294--6179337	21	2.2	20	83	4	52	50	0	0	50	1.00
6179678--6179792	28	4.2	28	65	20	64	46	2	0	50	1.21
6180740--6180764	2	12.5	2	100	0	50	48	0	0	52	1.00
6181117--6181170	23	2.3	23	87	6	74	37	3	1	57	1.27
6181177--6181223	23	2.0	23	92	8	78	44	4	4	46	1.42
6183170--6183288	61	2.0	61	84	3	159	43	18	11	26	1.84
6186587--6186624	3	12.7	3	100	0	76	68	0	0	31	0.90
6189254--6189294	11	3.5	11	84	12	55	29	0	2	68	1.03
6189255--6189301	24	1.9	25	91	4	78	29	2	2	65	1.15
6189262--6189301	13	3.2	12	83	16	55	30	2	0	67	1.04
6205642--6205676	2	17.5	2	100	0	70	51	0	48	0	1.00
6207412--6207438	13	2.1	13	100	0	54	55	0	0	44	0.99
6207724--6207790	23	2.9	23	79	14	59	47	0	0	52	1.00
6207754--6207782	15	2.0	15	93	6	51	37	0	0	62	0.96
6208303--6208341	20	2.0	20	89	0	60	56	5	2	35	1.35
6208288--6208372	42	2.0	42	81	6	100	54	4	1	40	1.29
6208448--6208510	25	2.4	27	82	10	78	49	0	3	47	1.17
6208448--6208518	25	2.8	24	76	16	72	47	0	4	47	1.21
6209755--6209807	27	2.0	27	81	7	63	66	0	3	30	1.10
6210860--6210895	18	2.0	18	89	10	56	44	5	0	50	1.25
6213817--6213857	2	20.5	2	100	0	82	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6222485--6222539	20	2.7	20	72	13	58	54	0	0	45	0.99
6222501--6222536	3	12.7	3	88	11	58	63	0	0	36	0.94
6222501--6222536	17	2.1	17	90	10	56	63	0	0	36	0.94
6222654--6222708	21	2.6	21	85	0	74	43	0	3	52	1.18
6222677--6222939	130	2.0	130	93	0	445	42	4	4	48	1.44
6222934--6222968	16	2.2	16	90	5	54	42	0	2	54	1.15
6223141--6223194	22	2.5	22	81	0	63	33	5	9	51	1.57
6223191--6223521	44	7.4	44	68	9	175	41	8	4	46	1.53
6223156--6223292	66	2.1	66	83	0	166	41	8	4	45	1.55
6223191--6223802	22	27.4	22	68	11	136	39	9	4	46	1.55
6223764--6223821	22	2.6	22	73	10	55	39	8	5	46	1.57
6224165--6224294	22	6.0	22	79	6	77	38	3	6	50	1.47
6224174--6224320	44	3.4	43	80	6	154	38	4	7	50	1.50
6224174--6224267	11	8.5	11	67	0	53	39	3	5	52	1.40
6226716--6226754	2	19.5	2	94	0	69	51	0	2	46	1.14
6228125--6228178	3	18.0	3	100	0	108	66	0	0	33	0.92
6229445--6229494	26	1.9	26	83	0	64	26	2	8	64	1.32
6236066--6236153	42	2.1	42	84	2	113	38	21	9	30	1.85
6236109--6236338	86	2.7	86	79	4	268	36	20	9	33	1.85
6236121--6236405	84	3.4	85	81	4	292	37	17	10	33	1.85
6236893--6237353	107	4.4	106	83	3	538	36	14	14	34	1.87
6240271--6240415	52	2.8	52	80	5	161	38	7	16	37	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6240900--6240940	18	2.2	18	87	12	57	12	7	4	75	1.16
6246095--6246246	65	2.3	65	85	1	187	17	21	13	48	1.81
6246404--6246614	86	2.5	86	83	0	269	34	18	10	36	1.86
6246403--6246670	86	3.2	84	80	4	243	33	18	11	36	1.87
6247185--6247316	50	2.6	50	81	4	149	37	12	16	34	1.86
6251009--6251091	22	3.7	22	78	3	94	36	8	6	49	1.58
6251009--6251203	44	4.4	44	75	12	141	34	9	5	49	1.59
6251007--6251203	22	8.9	22	68	13	73	35	9	5	49	1.59
6251229--6251285	22	2.6	22	72	5	53	35	5	8	50	1.56
6251172--6251313	44	3.2	44	72	8	112	38	10	4	45	1.60
6251400--6251450	11	4.7	11	73	4	50	35	5	3	54	1.43
6251421--6251519	22	4.5	22	72	5	83	34	10	7	48	1.64
6251609--6251706	22	4.5	22	76	8	85	37	10	4	47	1.56
6251681--6251745	20	3.1	21	78	12	64	41	6	4	47	1.49
6251692--6251765	22	3.5	22	78	10	57	39	5	5	50	1.48
6253250--6253365	6	19.3	6	70	22	59	75	2	0	21	0.98
6253270--6253364	32	3.0	30	79	15	86	74	2	0	23	0.92
6253274--6253364	13	7.5	12	74	19	73	74	2	0	23	0.92
6253249--6253346	43	2.3	43	77	17	109	73	2	1	23	1.00
6253319--6253365	19	2.5	19	100	0	94	80	4	0	14	0.85
6253270--6253357	5	17.0	5	74	18	58	73	2	0	23	0.94
6257404--6257703	150	2.0	150	96	0	555	28	17	18	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6262909--6263358	152	3.0	152	95	1	812	38	17	14	29	1.90
6263821--6263864	20	2.2	20	95	0	79	4	25	31	38	1.76
6263828--6263872	20	2.2	20	84	0	54	11	22	33	33	1.89
6264438--6264463	3	8.7	3	100	0	52	69	0	0	30	0.89
6267937--6267983	8	5.9	8	78	16	53	74	0	2	23	0.93
6267935--6267986	23	2.2	23	83	12	70	76	0	1	21	0.87
6267933--6267985	18	2.9	19	81	13	67	75	0	3	20	0.96
6267936--6268044	14	7.8	14	69	10	53	72	3	1	22	1.10
6270813--6270842	2	15.0	2	92	0	51	50	3	0	46	1.18
6272175--6272213	15	2.5	15	87	4	60	79	7	2	10	1.02
6273053--6273092	13	3.0	14	83	16	50	75	5	7	12	1.18
6271044--6273334	902	2.6	890	81	8	2730	44	7	8	39	1.63
6273583--6273635	19	2.8	18	78	16	54	54	5	3	35	1.42
6273061--6273653	320	1.9	320	87	3	890	45	8	6	39	1.61
6274482--6274576	48	2.0	48	91	0	154	38	15	9	35	1.80
6277503--6277527	2	12.5	2	100	0	50	48	0	0	52	1.00
6277837--6277879	20	2.0	22	83	16	56	51	2	0	46	1.13
6279366--6279399	10	3.3	10	87	4	50	73	0	0	26	0.83
6279609--6279663	21	2.6	21	75	11	58	36	10	0	52	1.37
6280935--6281022	22	3.9	23	83	5	117	51	0	4	44	1.22
6281477--6281515	20	1.9	21	84	5	53	43	7	10	38	1.67
6291076--6291351	58	4.8	58	90	2	421	40	13	4	42	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6291181--6291275	29	3.2	29	64	27	74	40	12	5	42	1.65
6291378--6291425	5	9.4	5	86	8	62	79	0	2	18	0.84
6291371--6291431	17	3.8	16	79	16	72	77	1	3	18	0.99
6291953--6292002	22	2.1	25	85	10	70	50	16	2	32	1.56
6292272--6292425	3	48.7	3	68	20	57	64	0	4	30	1.18
6292270--6292369	22	4.3	22	80	11	110	63	1	6	30	1.25
6292267--6292416	49	3.1	48	82	12	166	64	0	4	30	1.18
6292263--6292425	17	9.8	16	68	20	68	65	0	4	29	1.16
6294745--6294776	16	1.9	17	93	6	57	56	0	0	43	0.99
6326211--6326237	3	9.0	3	100	0	54	0	66	0	33	0.92
6327703--6327750	24	2.0	24	83	4	60	37	2	2	58	1.22
6328992--6329307	170	1.9	169	81	4	393	39	19	17	24	1.92
6328889--6329324	85	5.1	85	75	8	339	40	19	16	23	1.90
6328972--6329365	85	4.6	84	73	11	275	39	19	17	24	1.92
6328992--6329365	170	2.2	169	79	7	391	39	19	16	24	1.92
6329490--6329545	19	2.9	19	83	0	67	32	19	21	26	1.97
6329664--6329710	19	2.5	18	82	6	58	29	21	21	27	1.98
6329859--6329895	19	1.9	19	94	0	65	40	24	13	21	1.89
6329966--6330260	159	1.9	159	82	4	380	35	21	15	27	1.94
6330454--6330510	19	2.9	18	75	12	51	45	21	8	24	1.80
6330599--6330638	19	2.1	19	85	0	53	40	15	12	32	1.84
6330623--6330695	19	3.9	18	76	7	67	35	24	19	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6331991--6332225	63	3.7	63	80	2	249	44	10	6	38	1.65
6331994--6332225	125	1.8	126	82	2	297	43	10	6	39	1.64
6364980--6365032	27	2.0	27	84	0	70	22	9	15	52	1.70
6367982--6368019	18	2.1	19	90	5	60	42	0	5	52	1.24
6369620--6369687	26	2.6	26	84	11	86	52	0	0	47	1.00
6369788--6369832	24	2.0	22	86	8	63	55	0	2	42	1.12
6369817--6369850	17	1.9	18	88	5	52	50	2	2	44	1.32
6371825--6371857	2	16.5	2	100	0	66	48	0	0	51	1.00
6375154--6375213	16	4.1	15	76	18	63	48	0	0	51	1.00
6375234--6375283	17	3.2	15	83	11	57	36	0	0	64	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74