genome.fa.s5.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 ID=Chr05-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  64140413

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  106  of  208  ( 24913 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32171902--32172017	50	2.3	50	92	0	205	37	22	12	26	1.90
32172547--32172577	16	1.9	16	93	0	53	19	6	22	51	1.69
32172668--32172699	16	2.0	16	93	0	55	12	3	25	59	1.48
32172584--32172679	6	16.0	6	89	4	140	18	3	13	64	1.41
32174247--32174303	24	2.4	25	79	8	73	22	33	15	28	1.95
32174351--32174410	26	2.3	26	88	8	88	15	25	20	40	1.90
32174447--32174492	24	1.9	24	81	0	56	15	28	23	32	1.95
32174475--32174545	25	2.9	24	81	6	88	18	29	22	29	1.97
32174489--32174545	25	2.3	25	90	0	96	15	29	24	29	1.96
32175146--32175181	2	18.0	2	94	0	63	47	0	0	52	1.00
32176181--32176226	15	3.1	15	80	0	56	19	8	34	36	1.83
32177038--32177071	3	11.3	3	93	0	59	0	29	0	70	0.87
32182337--32182444	44	2.5	44	77	14	125	24	17	29	28	1.97
32183226--32183562	47	7.2	46	87	3	370	26	13	20	40	1.89
32183228--32183562	70	4.8	69	85	2	357	26	13	20	40	1.89
32183225--32183571	117	3.0	117	88	0	480	27	12	19	40	1.88
32185023--32185055	17	1.9	17	88	11	50	21	0	12	66	1.23
32185101--32185125	13	1.9	13	100	0	50	32	0	4	64	1.12
32185278--32185507	111	2.0	115	94	3	414	38	8	1	51	1.43
32185333--32185474	2	71.5	2	72	12	69	39	7	1	52	1.38
32187623--32187669	19	2.5	19	86	6	60	25	19	10	44	1.82
32190251--32190301	11	4.4	11	83	13	66	84	13	0	1	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32190255--32190301	25	1.9	25	91	4	78	85	12	0	2	0.70
32191583--32192073	88	5.6	88	93	0	795	27	23	25	24	2.00
32193608--32193640	17	1.9	17	88	11	50	21	0	12	66	1.23
32193686--32193710	13	1.9	13	100	0	50	32	0	4	64	1.12
32193814--32193973	87	1.8	87	81	7	200	38	9	0	51	1.39
32208469--32208511	19	2.3	19	81	14	54	60	0	0	39	0.97
32208834--32208900	11	5.9	11	75	17	66	38	2	1	56	1.24
32210090--32210146	3	19.3	3	77	10	55	29	1	1	66	1.12
32210256--32210294	13	3.1	12	85	10	51	41	0	2	56	1.13
32210306--32210365	26	2.3	26	83	13	72	28	5	5	61	1.38
32217830--32217902	27	2.7	27	100	0	146	16	10	5	67	1.39
32222720--32222914	44	4.5	44	70	15	131	29	21	23	26	1.99
32222764--32223001	40	5.7	40	70	15	160	26	21	23	27	1.99
32222712--32223002	127	2.3	127	94	0	519	27	22	23	26	1.99
32224414--32224438	13	1.9	13	100	0	50	40	0	4	56	1.18
32224416--32224449	15	2.3	15	90	10	52	44	0	2	52	1.16
32224460--32224519	26	2.3	26	83	13	72	28	5	5	61	1.38
32224457--32224519	25	2.5	26	82	12	78	28	4	4	61	1.36
32226021--32226052	6	5.3	6	100	0	64	50	0	0	50	1.00
32226747--32227064	101	3.1	99	82	6	336	36	9	17	35	1.83
32226924--32226964	21	2.0	21	85	0	55	43	12	9	34	1.75
32227025--32227065	22	1.9	22	85	5	57	46	14	14	24	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32234941--32234999	29	2.0	29	83	0	73	33	30	10	25	1.89
32242311--32242401	23	4.0	22	72	14	62	62	6	4	26	1.39
32242435--32242511	3	25.7	3	100	0	154	33	32	0	33	1.58
32243537--32243577	19	2.2	19	86	4	57	4	24	53	17	1.63
32247164--32247310	28	5.2	28	77	4	145	26	18	23	31	1.97
32247163--32247324	56	2.9	56	83	3	177	27	18	24	30	1.98
32247163--32247319	84	1.9	85	83	4	210	27	17	24	30	1.97
32251687--32251843	60	2.7	58	82	4	181	47	12	16	23	1.81
32251691--32251843	58	2.6	60	81	6	179	47	11	16	23	1.80
32251971--32252008	2	19.0	2	100	0	76	50	0	0	50	1.00
32252427--32252461	7	5.1	7	93	6	63	28	0	0	71	0.86
32263188--32263247	20	3.0	20	80	0	66	3	31	0	65	1.09
32263219--32263256	15	2.5	15	95	4	67	0	18	0	81	0.69
32263219--32263256	5	7.4	5	83	16	51	0	18	0	81	0.69
32263218--32263256	20	1.9	21	94	5	71	0	20	0	79	0.73
32264692--32264765	28	2.6	28	93	0	121	28	27	22	21	1.99
32265005--32265242	32	7.5	32	81	4	275	37	22	20	19	1.94
32265020--32265242	64	3.5	64	94	0	383	36	22	21	19	1.95
32265236--32265288	26	2.2	23	75	18	61	33	24	24	16	1.96
32265242--32265295	26	2.1	26	96	0	99	35	24	22	18	1.96
32265285--32265347	27	2.4	27	80	15	69	34	20	23	20	1.96
32265410--32265563	24	6.4	24	85	2	130	44	22	6	26	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32265429--32265567	48	2.9	48	80	4	147	45	22	6	25	1.76
32265639--32265753	27	4.3	27	89	4	155	24	20	20	35	1.96
32265633--32265753	53	2.3	52	87	5	163	25	19	19	36	1.94
32266033--32266075	17	2.4	17	80	7	50	23	44	20	11	1.84
32267922--32268036	46	2.5	46	94	2	196	30	26	20	22	1.98
32267915--32268035	23	5.2	24	83	11	164	31	26	19	22	1.98
32268254--32268292	18	2.2	17	86	13	53	46	20	0	33	1.51
32278533--32278581	20	2.5	20	89	0	71	55	8	6	30	1.54
32287775--32287848	37	2.0	37	100	0	148	32	10	24	32	1.90
32292835--32293748	44	20.7	45	71	14	394	28	19	24	27	1.98
32293022--32293739	217	3.3	217	94	0	1224	28	18	23	28	1.98
32295324--32295356	18	1.9	17	88	11	50	30	6	3	60	1.36
32296478--32296541	29	2.2	30	82	2	76	32	4	12	50	1.61
32298983--32299030	23	2.1	23	84	7	62	52	0	8	39	1.32
32299739--32299775	11	3.5	11	88	7	58	16	2	0	81	0.81
32299740--32299775	10	3.5	10	96	3	63	16	2	0	80	0.83
32299726--32299778	10	4.9	10	78	17	52	18	9	0	71	1.12
32299772--32299838	30	2.3	30	79	7	75	38	8	0	52	1.33
32299810--32299859	21	2.5	20	81	15	59	40	4	2	54	1.31
32300748--32300846	39	2.4	41	82	11	123	52	6	4	37	1.45
32301464--32301498	16	2.2	16	90	5	54	48	8	11	31	1.69
32309138--32309185	12	4.3	11	79	12	53	79	6	0	14	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32309138--32309180	18	2.5	17	88	7	61	79	4	0	16	0.90
32309138--32309185	5	8.8	5	84	13	51	79	6	0	14	0.92
32326996--32327172	45	4.0	44	88	4	223	23	14	27	35	1.93
32334731--32334772	17	2.4	18	80	4	50	50	7	0	42	1.30
32338435--32338464	12	2.5	12	88	0	51	6	23	40	30	1.80
32347318--32347380	17	3.5	17	83	10	81	7	17	3	71	1.23
32354083--32354120	19	2.0	19	85	10	51	23	39	0	36	1.55
32367137--32367456	157	2.0	157	95	0	568	32	13	24	29	1.93
32381368--32381394	5	5.4	5	100	0	54	18	0	0	81	0.69
32389070--32389257	51	3.7	50	83	3	225	30	27	15	26	1.96
32393975--32394022	18	2.6	18	83	6	60	50	2	4	43	1.33
32394631--32394660	14	2.1	14	93	0	51	16	43	0	40	1.48
32400069--32400286	82	2.7	82	80	0	238	35	15	27	21	1.94
32400069--32400290	123	1.8	123	81	2	275	35	15	27	22	1.94
32400069--32400292	41	5.5	41	77	4	209	35	15	26	21	1.94
32416334--32416488	39	3.9	39	88	5	197	48	9	10	32	1.68
32421668--32421797	42	3.1	42	90	0	170	24	37	16	21	1.93
32421711--32421780	21	3.3	21	66	7	61	24	41	15	18	1.89
32424931--32424964	12	2.8	12	86	0	50	0	14	0	85	0.60
32432307--32432704	194	2.0	195	96	1	728	46	15	13	25	1.81
32435126--32435157	15	2.1	15	94	0	55	34	21	15	28	1.94
32436019--32436065	22	2.1	22	92	0	76	14	17	51	17	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32436167--32436213	22	2.1	22	88	7	69	19	14	46	19	1.84
32441050--32441126	31	2.5	31	81	10	88	28	10	15	45	1.79
32441490--32441563	31	2.4	31	84	2	87	25	18	16	39	1.91
32442558--32442597	21	1.9	21	90	10	64	37	5	0	57	1.21
32442767--32442842	31	2.5	31	91	0	125	44	14	15	25	1.84
32443836--32443881	11	4.0	12	78	16	53	23	32	2	41	1.67
32443835--32443889	22	2.5	21	80	16	58	27	29	1	41	1.66
32443849--32443948	51	2.0	50	82	7	121	28	24	2	46	1.64
32445760--32445799	18	2.2	18	86	0	53	17	30	7	45	1.76
32446340--32446624	22	13.0	22	80	8	307	43	30	0	24	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208