genome.fa.s5.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 ID=Chr05-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  64140413

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  150  of  208  ( 24913 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45789415--45789792	98	3.8	98	85	4	461	22	19	21	35	1.96
45792155--45792269	50	2.3	48	80	11	117	6	6	6	80	1.01
45792182--45792259	14	5.4	14	74	8	66	6	5	6	82	0.96
45792188--45792273	8	10.1	8	81	9	66	6	4	4	83	0.89
45792225--45792298	25	2.9	24	82	8	67	10	5	4	79	1.02
45792194--45792269	1	76.0	1	73	0	53	5	5	3	85	0.82
45797505--45797573	3	23.0	3	96	0	129	65	0	1	33	1.02
45800012--45800073	21	3.0	21	82	0	88	16	25	17	40	1.90
45802271--45802428	59	2.7	59	82	7	196	25	25	22	26	2.00
45802316--45802448	59	2.3	59	82	5	153	23	22	21	32	1.98
45805294--45805334	2	20.5	2	100	0	82	51	0	0	48	1.00
45807308--45807341	17	2.1	17	88	5	52	38	0	0	61	0.96
45807889--45807963	10	7.5	10	78	13	75	56	1	0	42	1.08
45807889--45807942	21	2.5	21	90	3	81	57	1	0	40	1.09
45807900--45807959	21	3.1	19	83	7	68	56	1	0	41	1.09
45807921--45807987	19	3.4	19	80	13	64	58	0	0	41	0.98
45807913--45807969	28	2.0	29	90	10	91	54	0	0	45	0.99
45807942--45807981	21	1.9	21	89	0	62	60	0	0	40	0.97
45807945--45807983	11	3.5	11	85	3	51	64	0	0	35	0.94
45814837--45814861	8	3.1	8	100	0	50	76	0	24	0	0.80
45815709--45815767	14	4.0	15	79	18	70	67	0	16	15	1.23
45815735--45815767	16	2.0	17	94	5	59	66	0	15	18	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45815709--45815765	7	7.6	8	76	23	54	70	0	15	14	1.18
45816970--45817096	44	2.9	44	90	0	209	29	21	25	23	1.99
45817058--45817449	129	3.1	128	90	2	603	32	20	22	24	1.98
45817576--45817685	45	2.5	45	76	4	107	29	20	22	27	1.99
45817747--45817861	44	2.6	44	72	13	110	29	22	23	24	1.99
45817445--45817959	218	2.4	218	85	0	681	28	18	23	28	1.98
45822519--45823140	289	2.2	286	80	7	670	39	12	13	35	1.82
45822652--45823223	289	2.0	281	79	7	605	39	12	12	34	1.81
45825873--45825906	17	2.0	17	88	0	50	55	8	2	32	1.45
45834849--45834885	2	18.5	2	94	0	65	51	0	0	48	1.00
45838351--45838379	12	2.4	12	100	0	58	17	0	20	62	1.33
45840133--45840174	13	3.5	13	81	18	63	50	14	0	35	1.43
45840134--45840183	23	2.2	23	89	7	75	54	14	0	32	1.40
45846567--45846610	21	2.1	21	100	0	88	22	15	18	43	1.88
45848319--45848370	23	2.3	23	89	0	77	42	23	7	26	1.81
45865202--45865238	2	18.5	2	100	0	74	48	0	0	51	1.00
45865849--45865878	15	2.1	14	93	6	51	63	6	3	26	1.35
45866243--45866278	2	18.5	2	94	5	65	50	0	0	50	1.00
45866440--45866479	16	2.5	16	83	0	53	37	0	2	60	1.11
45866643--45866732	45	2.0	45	100	0	180	33	13	11	42	1.79
45869762--45869863	39	2.6	38	80	7	116	28	5	22	43	1.76
45877201--45877880	54	12.6	54	74	8	388	26	20	14	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45877102--45877882	108	7.3	108	75	5	485	26	20	14	37	1.92
45878212--45878389	54	3.3	54	78	6	164	29	20	12	36	1.90
45878158--45878403	108	2.3	108	78	1	242	29	19	14	36	1.91
45878720--45878978	54	4.8	54	70	4	173	25	21	15	38	1.92
45878438--45879360	508	1.8	509	81	3	1158	31	16	17	34	1.93
45879542--45879567	13	2.0	13	100	0	52	23	46	7	23	1.78
45880504--45880586	3	26.7	3	72	11	60	27	6	4	61	1.40
45880503--45880586	21	3.9	21	75	14	80	27	5	4	61	1.39
45880803--45880863	27	2.3	27	80	8	72	37	8	4	49	1.54
45881349--45881552	107	1.9	106	88	2	309	30	15	18	35	1.91
45885145--45885202	29	2.2	25	87	12	80	70	10	10	8	1.34
45885199--45885241	17	2.5	17	88	3	59	81	0	13	4	0.84
45885211--45885243	11	3.0	11	87	12	50	81	0	15	3	0.80
45887267--45888724	88	16.6	88	92	0	2351	27	24	23	24	2.00
45888727--45889129	128	3.1	128	91	1	637	32	20	21	25	1.97
45889156--45889360	113	1.8	113	91	2	340	31	19	20	29	1.96
45890155--45890193	19	2.1	19	85	9	53	64	7	12	15	1.49
45890232--45890257	7	3.7	7	100	0	52	23	0	0	76	0.78
45890881--45890963	3	26.7	3	71	11	51	26	7	4	61	1.42
45891192--45891252	27	2.3	27	80	8	72	37	8	4	49	1.54
45892679--45892854	54	3.3	55	79	6	173	25	19	17	37	1.94
45892367--45893281	451	2.0	446	82	3	1129	31	16	18	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45893226--45893359	53	2.5	54	78	9	157	27	20	11	40	1.87
45893333--45893466	54	2.5	53	82	10	164	28	18	14	38	1.90
45893761--45893916	54	2.9	54	80	5	163	26	19	15	37	1.92
45893822--45893951	54	2.4	54	80	3	145	32	21	10	36	1.87
45893981--45894110	54	2.4	55	84	3	174	26	23	14	35	1.93
45894016--45894133	54	2.2	54	81	6	141	26	22	14	36	1.93
45894793--45894967	54	3.3	53	77	4	181	26	22	13	37	1.92
45894793--45894931	53	2.6	53	80	3	163	26	24	13	35	1.93
45894200--45894996	380	2.1	378	80	4	863	32	16	16	34	1.92
45895215--45895471	54	4.8	54	75	1	185	26	21	14	37	1.92
45895215--45895450	108	2.2	108	82	0	274	26	21	14	37	1.92
45896312--45896433	54	2.3	54	84	2	147	26	16	17	40	1.90
45896748--45896952	54	3.8	53	71	6	160	26	20	13	38	1.90
45894819--45898442	507	7.1	506	78	3	3314	30	17	17	34	1.93
45897782--45897938	55	2.9	54	79	5	165	26	23	14	35	1.93
45898293--45898427	54	2.5	54	81	0	162	24	20	16	39	1.92
45898324--45898442	54	2.2	54	84	0	166	25	22	15	36	1.93
45898458--45898600	54	2.6	54	79	4	171	30	22	11	34	1.90
45899039--45899165	54	2.4	54	79	2	139	28	22	14	33	1.94
45899069--45899219	54	2.8	54	84	1	178	28	23	13	34	1.93
45899142--45899244	54	1.9	54	85	0	143	28	21	11	38	1.88
45899619--45899753	54	2.5	54	81	0	153	25	20	14	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45900801--45900996	54	3.6	54	75	4	189	27	17	17	37	1.92
45901388--45901514	54	2.3	55	80	9	136	27	22	14	36	1.92
45901419--45901701	54	5.2	54	74	3	237	26	21	13	37	1.91
45901390--45901701	108	2.9	108	76	1	320	27	21	13	37	1.91
45901043--45902102	563	1.9	563	79	4	1215	31	17	16	34	1.92
45902751--45902984	54	4.3	54	76	9	199	26	20	17	36	1.94
45902704--45902955	108	2.3	107	76	8	242	28	20	14	36	1.92
45903262--45903414	54	2.8	54	86	0	207	26	18	13	41	1.87
45902919--45903815	401	2.2	397	82	4	1040	31	16	17	34	1.92
45903662--45903868	108	1.9	107	83	7	267	26	20	14	39	1.90
45903666--45903869	54	3.8	53	78	10	191	26	20	13	39	1.89
45905113--45905483	162	2.3	161	79	3	377	27	21	13	37	1.91
45905113--45905454	108	3.2	107	76	4	330	27	20	14	37	1.92
45905104--45905504	108	3.7	108	77	4	294	27	20	13	37	1.91
45905113--45905504	54	7.3	54	75	3	254	27	20	13	38	1.91
45905737--45906035	54	5.5	55	81	2	187	26	21	15	37	1.93
45905780--45906122	108	3.2	108	80	1	402	26	21	14	37	1.92
45905780--45906122	162	2.1	162	84	1	436	26	21	14	37	1.92
45905780--45906122	54	6.4	54	79	3	341	26	21	14	37	1.92
45905185--45906911	639	2.8	616	79	5	1674	29	18	17	33	1.94
45906439--45906586	51	2.8	53	78	6	156	24	18	18	38	1.93
45906391--45906755	54	6.8	54	77	4	301	25	20	16	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45907633--45907923	46	6.3	46	93	0	483	40	17	15	26	1.90
45908594--45908708	41	2.8	40	81	5	131	30	28	14	26	1.95
45914028--45914083	25	2.2	26	79	17	73	62	0	1	35	1.06
45914655--45914696	22	2.1	19	86	13	57	52	0	2	45	1.13
45914757--45914817	30	2.1	30	87	3	88	52	9	6	31	1.60
45918272--45918319	19	2.6	19	81	15	57	27	25	0	47	1.52
45921348--45921375	8	3.5	8	100	0	56	53	21	0	25	1.46
45922068--45922433	182	2.0	180	91	1	597	39	15	10	34	1.83
45924633--45924817	54	3.4	54	76	10	171	25	17	17	38	1.92
45924718--45925506	348	2.3	348	80	6	900	31	17	17	32	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208