genome.fa.s5.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 ID=Chr05-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  64140413

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  120  of  208  ( 24913 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36625838--36625868	16	1.9	16	100	0	62	45	22	19	12	1.84
36635152--36635335	60	3.1	60	78	6	201	29	25	11	33	1.91
36641975--36642017	17	2.5	18	77	11	54	55	0	4	39	1.20
36648136--36648188	25	2.1	25	96	0	97	52	16	3	26	1.61
36651296--36651452	53	3.0	53	91	0	260	43	8	23	23	1.82
36652743--36652799	23	2.5	23	88	0	78	35	12	17	35	1.87
36660914--36661121	104	2.0	104	98	0	398	33	15	25	25	1.95
36677060--36677166	29	3.7	29	83	5	135	39	24	16	19	1.92
36680468--36680532	22	3.0	22	66	8	60	40	23	18	18	1.92
36680525--36680725	32	6.3	32	83	2	219	39	20	18	20	1.93
36680525--36680725	63	3.2	64	80	6	212	39	20	18	20	1.93
36680550--36680723	95	1.8	95	87	0	258	39	21	19	19	1.93
36680880--36680922	11	3.7	11	76	11	50	51	23	6	18	1.70
36680870--36680927	24	2.4	24	94	0	98	48	22	6	22	1.74
36680917--36680969	26	2.0	27	88	3	81	35	22	16	24	1.95
36680953--36681289	54	6.3	54	78	5	317	21	21	21	35	1.96
36681002--36681289	81	3.6	80	83	3	310	20	21	22	35	1.96
36680965--36681308	27	12.8	26	77	6	260	22	21	21	34	1.97
36688378--36688417	18	2.2	19	86	4	55	57	0	5	37	1.21
36689557--36689595	13	3.0	13	88	0	60	25	12	15	46	1.81
36690969--36691047	25	3.2	25	94	0	140	24	20	26	29	1.99
36700179--36700225	20	2.3	20	92	0	76	34	23	19	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36704495--36704674	43	4.2	43	80	5	202	20	20	24	35	1.96
36704498--36704658	86	1.9	86	88	0	241	21	21	22	34	1.97
36708448--36708574	43	3.0	43	90	0	182	26	22	18	31	1.97
36709636--36709712	38	2.0	38	92	0	127	22	16	20	40	1.91
36710911--36711099	40	4.8	40	88	0	272	17	26	20	35	1.95
36722791--36722883	45	2.1	45	100	0	186	23	24	15	36	1.93
36727680--36727737	28	2.1	27	90	3	89	22	22	24	31	1.99
36727666--36727765	33	3.2	33	75	16	95	24	23	24	29	1.99
36737215--36737254	22	1.9	22	85	10	57	40	0	2	57	1.12
36737326--36737495	59	2.9	59	93	0	286	46	8	5	39	1.58
36737506--36737547	16	2.6	16	92	0	66	42	7	2	47	1.43
36737523--36737582	23	2.7	23	79	5	61	48	1	1	48	1.21
36738153--36738285	27	5.0	27	91	0	205	42	21	17	18	1.89
36738476--36738529	26	2.1	26	85	0	72	18	20	24	37	1.94
36745409--36745464	27	2.1	27	89	0	85	41	21	17	19	1.91
36745417--36745495	27	3.0	26	80	9	70	36	18	18	25	1.94
36745652--36745705	26	2.1	26	82	6	65	22	24	18	35	1.96
36745808--36745873	28	2.4	27	87	2	96	24	22	22	30	1.99
36745806--36745895	28	2.9	31	77	15	89	25	23	23	27	2.00
36746985--36747019	3	11.7	3	93	0	61	2	0	34	62	1.10
36748763--36748800	14	2.6	15	87	8	60	0	34	2	63	1.09
36753735--36753762	7	4.0	7	100	0	56	14	14	28	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36769434--36769484	22	2.3	22	75	18	52	49	0	3	47	1.20
36771963--36771994	2	16.0	2	100	0	64	50	0	0	50	1.00
36773012--36773066	23	2.4	23	79	11	60	32	5	0	61	1.19
36776709--36776750	20	2.1	20	91	8	68	33	2	9	54	1.46
36778933--36779077	43	3.4	42	83	6	166	19	20	24	35	1.95
36778957--36779267	43	7.2	42	78	9	155	26	26	21	25	2.00
36779106--36779270	88	1.9	88	83	8	219	31	29	18	21	1.96
36779068--36779270	88	2.3	85	79	12	218	30	29	18	21	1.97
36779700--36779744	21	2.1	21	84	8	56	2	37	20	40	1.65
36779715--36779880	66	2.5	66	85	3	201	13	27	18	40	1.89
36784718--36784755	17	2.2	17	95	0	67	39	13	36	10	1.79
36784996--36785063	33	2.1	33	94	0	118	35	29	2	32	1.73
36785285--36785323	16	2.6	15	84	11	53	35	5	35	23	1.77
36785299--36785355	23	2.4	22	80	13	60	36	1	42	19	1.62
36789106--36789407	41	7.3	41	90	0	424	32	27	25	14	1.95
36789280--36789394	24	5.4	24	61	27	71	29	29	25	15	1.96
36789491--36789568	40	2.0	40	84	5	104	17	29	23	29	1.97
36790396--36790434	18	2.2	18	86	9	53	64	2	0	33	1.08
36790438--36790487	24	2.1	23	85	3	64	54	6	0	40	1.25
36791091--36791169	25	3.2	24	73	19	65	44	0	1	54	1.08
36792658--36792697	21	1.9	21	84	0	53	57	7	17	17	1.62
36794286--36794788	44	11.4	44	66	8	209	29	24	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36794263--36794860	132	4.5	132	91	2	930	29	24	19	26	1.98
36794286--36794860	44	13.0	45	65	13	178	29	24	18	26	1.98
36795660--36795684	13	1.9	13	100	0	50	56	8	24	12	1.62
36797024--36797064	20	2.0	20	90	9	66	65	4	14	14	1.42
36811647--36811700	25	2.2	25	86	0	72	37	12	9	40	1.76
36815383--36815451	35	1.9	36	88	2	104	34	20	14	30	1.92
36815383--36815461	36	2.2	35	84	6	97	32	22	12	31	1.92
36816850--36816884	17	2.0	18	88	5	54	51	0	8	40	1.33
36819363--36819398	18	2.0	18	88	0	54	16	8	2	72	1.21
36819721--36819748	11	2.5	11	100	0	56	14	0	14	71	1.15
36820168--36820213	18	2.6	18	82	0	56	32	4	4	58	1.37
36820163--36820242	42	1.9	42	82	5	99	33	3	5	57	1.38
36820650--36820695	20	2.3	20	85	3	58	23	2	4	69	1.17
36824061--36824103	2	22.0	2	95	4	79	48	0	0	51	1.00
36832850--36832878	13	2.1	14	93	6	51	6	10	17	65	1.44
36840610--36840662	19	2.8	19	78	16	56	39	16	1	41	1.60
36851622--36851670	20	2.5	20	86	0	62	46	10	8	34	1.67
36851642--36851722	31	2.6	31	90	2	126	46	9	7	35	1.65
36855367--36855658	149	2.0	148	95	0	521	44	8	9	38	1.67
36863426--36863494	34	2.0	34	94	0	120	28	27	21	21	1.99
36863426--36863478	17	3.1	17	71	28	58	30	24	22	22	1.99
36865482--36865535	24	2.3	24	81	9	58	57	3	1	37	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36866585--36867209	318	2.0	318	89	1	959	24	27	19	29	1.99
36872215--36872255	3	13.7	3	100	0	82	65	0	0	34	0.93
36876327--36876357	16	1.9	16	93	0	53	48	0	9	41	1.36
36876627--36876680	20	2.8	20	86	13	85	29	9	9	51	1.65
36877348--36877438	46	2.0	46	97	0	173	40	5	5	48	1.49
36877563--36877606	23	1.9	23	85	0	61	40	20	11	27	1.86
36886414--36886454	2	20.5	2	94	0	73	48	0	2	48	1.14
36887047--36887095	20	2.5	20	79	0	62	44	6	0	48	1.27
36888311--36888371	32	1.9	32	96	0	113	50	18	3	27	1.62
36888311--36888384	32	2.5	30	87	10	100	51	18	2	27	1.60
36888312--36888398	27	3.0	27	83	11	77	51	18	3	26	1.62
36906985--36907053	31	2.3	30	87	2	102	43	13	7	36	1.71
36920173--36920224	22	2.3	23	80	9	63	34	1	1	61	1.18
36930129--36930162	17	2.0	17	100	0	68	35	35	11	17	1.87
36933468--36933501	15	2.3	15	100	0	68	29	0	11	58	1.33
36937071--36937181	25	4.4	25	80	8	127	20	26	18	34	1.96
36937071--36937208	50	2.8	50	84	4	163	20	25	20	34	1.97
36937071--36937208	25	5.5	25	75	10	120	20	25	20	34	1.97
36937335--36937373	19	2.1	19	100	0	78	43	5	20	30	1.73
36945608--36945676	21	3.3	21	76	8	68	14	10	33	42	1.79
36948446--36948600	22	7.0	22	90	0	229	32	14	25	27	1.94
36952680--36952765	40	2.2	40	82	11	101	30	4	2	62	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36954296--36954330	16	2.2	16	89	0	52	22	14	20	42	1.88
36957508--36957549	7	6.0	7	81	18	52	69	0	16	14	1.20
36957508--36957551	15	3.1	15	87	12	58	68	0	18	13	1.22
36958909--36960310	100	14.1	100	90	1	2111	27	22	26	23	1.99
36961958--36962043	40	2.2	40	82	11	101	30	4	2	62	1.28
36964200--36964247	9	5.7	9	76	18	50	27	0	39	33	1.57
36964200--36964262	33	1.9	32	96	3	117	28	0	39	31	1.57
36972553--36972601	25	2.0	23	81	14	55	30	4	12	53	1.57
36981156--36981197	21	2.0	21	86	9	59	23	7	7	61	1.47
36984163--36984222	4	15.0	4	96	0	111	26	0	23	50	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208