genome.fa.s5.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 ID=Chr05-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  64140413

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  149  of  208  ( 24913 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45541414--45541483	28	2.5	28	95	0	122	24	22	15	37	1.93
45542688--45542740	13	3.8	13	78	11	52	77	0	3	18	0.92
45548524--45548553	5	6.0	5	92	0	51	36	0	3	60	1.14
45556833--45556872	20	2.0	20	95	0	71	32	25	12	30	1.92
45564953--45565246	44	6.7	45	75	4	123	29	19	25	25	1.98
45565003--45565306	88	3.5	88	99	0	599	29	17	26	25	1.98
45564898--45565306	176	2.3	177	90	3	613	31	17	25	25	1.97
45565042--45565277	45	5.3	45	76	4	273	29	18	27	25	1.98
45564991--45565306	44	7.2	44	75	4	323	30	17	26	25	1.97
45578550--45578587	14	2.8	14	84	4	51	52	0	0	47	1.00
45581192--45581229	18	2.2	18	85	4	51	10	18	10	60	1.57
45581575--45581604	15	1.9	16	93	6	53	10	0	16	73	1.09
45581985--45582452	44	10.2	43	69	18	211	26	20	19	33	1.97
45582061--45582381	98	3.4	97	77	12	378	27	20	19	33	1.96
45581929--45582240	142	2.2	142	94	0	536	27	20	19	33	1.97
45582010--45582414	186	2.2	186	92	0	684	26	20	19	32	1.97
45582157--45582414	142	1.8	141	82	5	331	27	20	19	33	1.96
45584398--45584438	12	3.3	12	89	3	64	12	0	14	73	1.11
45584397--45584439	6	6.7	7	92	7	58	11	0	13	74	1.07
45584330--45584439	31	3.5	31	77	8	91	11	8	10	69	1.38
45592226--45592284	21	2.8	21	87	7	75	50	3	6	38	1.45
45592440--45592471	9	3.6	9	91	0	55	87	3	0	9	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45592469--45592519	16	3.2	16	77	0	57	56	1	5	35	1.35
45592603--45592654	3	18.0	3	76	7	54	59	3	0	36	1.16
45596171--45596210	15	2.7	15	84	11	55	65	0	0	35	0.93
45597686--45597716	15	2.0	16	93	6	55	70	16	0	12	1.16
45598061--45598098	18	2.2	18	85	4	51	60	10	18	10	1.57
45613577--45613621	19	2.3	19	88	3	63	64	0	0	35	0.94
45620131--45620187	29	2.0	28	82	3	69	59	8	0	31	1.28
45620190--45620241	12	4.0	12	77	18	59	67	1	0	30	1.02
45620139--45620241	19	5.3	19	76	11	59	64	2	0	33	1.09
45620139--45620267	10	13.2	9	74	17	91	61	3	0	34	1.20
45621732--45621770	21	1.9	21	89	5	62	53	0	7	38	1.30
45623363--45623397	6	5.8	6	100	0	70	14	17	0	68	1.21
45623397--45623439	3	14.7	3	90	4	70	0	32	2	65	1.06
45631656--45631690	18	1.9	18	94	0	61	25	40	28	5	1.78
45632792--45632817	2	13.0	2	100	0	52	50	0	0	50	1.00
45635699--45635745	3	15.7	3	100	0	94	68	0	0	31	0.90
45636045--45636107	31	2.0	32	96	3	119	42	15	9	31	1.79
45639170--45639249	10	8.2	10	72	15	60	62	0	1	36	1.03
45639211--45639306	18	5.2	19	70	12	67	62	2	4	31	1.26
45639552--45639620	19	3.6	19	72	20	54	33	1	0	65	1.02
45647064--45647094	16	1.9	16	93	0	53	35	22	22	19	1.96
45647078--45647297	43	5.1	43	80	4	230	25	27	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45647417--45647484	35	2.0	35	82	8	86	57	2	1	38	1.23
45654465--45654786	114	2.9	112	89	5	485	26	20	27	24	1.99
45654851--45655019	73	2.4	71	90	2	257	27	18	27	26	1.98
45654922--45655133	114	1.9	114	93	0	370	25	20	26	26	1.99
45655036--45655190	73	2.1	73	93	0	265	26	21	26	25	2.00
45655393--45655426	8	4.6	7	86	13	50	17	0	50	32	1.47
45655372--45655426	15	3.7	15	76	11	60	18	0	47	34	1.49
45655719--45655760	15	2.9	15	92	3	68	30	0	30	38	1.58
45655777--45655846	15	4.9	14	76	11	63	21	0	42	35	1.53
45656429--45656699	137	2.0	137	91	5	440	44	14	15	26	1.84
45656645--45656958	104	3.0	105	85	8	421	49	11	12	26	1.75
45661023--45661140	43	2.8	43	82	6	134	19	16	33	30	1.94
45663377--45663487	8	13.6	8	69	11	55	51	2	4	41	1.36
45663449--45663484	4	9.0	4	87	0	54	50	0	0	50	1.00
45663449--45663484	6	6.0	6	93	0	54	50	0	0	50	1.00
45663898--45663935	20	1.9	20	88	0	58	26	15	26	31	1.96
45664116--45664146	3	10.3	3	92	0	53	0	29	0	70	0.87
45665138--45665190	21	2.5	21	90	0	79	13	33	33	18	1.90
45667247--45667271	8	3.1	8	100	0	50	48	24	16	12	1.79
45672469--45672513	9	4.9	9	88	2	63	24	11	22	42	1.86
45674158--45674213	25	2.2	25	84	6	69	16	23	21	39	1.92
45676472--45676509	20	1.9	20	88	0	58	34	2	2	60	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45676603--45676820	118	1.9	117	83	3	289	39	5	7	47	1.55
45676829--45676864	17	2.1	17	89	0	54	41	2	2	52	1.30
45684942--45684979	17	2.2	17	86	9	51	44	2	0	52	1.14
45684994--45685044	20	2.7	19	80	14	61	31	0	5	62	1.19
45684994--45685045	19	2.7	19	80	11	61	30	0	5	63	1.18
45687872--45687920	24	2.0	25	84	8	64	57	6	0	36	1.24
45688709--45688742	16	2.1	17	88	5	52	67	8	17	5	1.37
45688704--45688760	20	2.7	22	82	17	68	64	7	22	5	1.38
45689505--45689991	100	4.9	100	83	4	335	23	18	24	34	1.96
45689602--45689970	50	7.4	50	73	3	303	24	19	23	33	1.97
45689583--45689969	200	1.9	200	85	3	537	24	18	22	33	1.97
45690049--45690718	44	14.6	44	67	15	135	28	20	18	32	1.96
45690037--45690594	142	3.9	141	93	2	917	26	20	18	33	1.97
45690462--45690778	176	1.8	174	90	2	519	28	20	19	31	1.97
45691992--45692045	7	8.0	7	83	8	76	14	18	0	66	1.25
45691995--45692044	6	7.7	6	82	12	55	14	18	0	68	1.22
45691992--45692044	13	4.0	13	83	11	72	15	18	0	66	1.26
45691990--45692044	20	2.8	20	88	0	92	14	20	0	65	1.27
45703645--45703694	18	3.1	16	83	11	57	68	0	2	30	1.01
45704064--45704092	15	1.9	15	100	0	58	41	6	13	37	1.72
45715309--45715429	50	2.4	50	80	5	145	22	28	21	28	1.99
45726681--45726854	85	2.0	85	98	0	339	51	13	5	29	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45732312--45732372	32	1.9	31	83	9	79	63	3	1	31	1.20
45732458--45732509	23	2.3	22	81	12	61	50	7	9	32	1.64
45734708--45734750	12	3.8	12	81	12	63	11	23	0	65	1.25
45734707--45734761	22	2.4	22	93	6	92	14	25	0	60	1.35
45734708--45734773	12	6.1	11	75	20	59	13	25	1	59	1.44
45735013--45735262	50	4.9	50	81	5	261	25	28	19	27	1.99
45744080--45744207	27	4.7	27	88	0	166	33	19	21	25	1.97
45744239--45744282	23	1.9	23	95	0	79	22	4	25	47	1.70
45744273--45744319	24	2.0	24	87	8	69	17	6	27	48	1.71
45744470--45744642	32	5.5	32	82	1	188	20	18	20	40	1.92
45744642--45744696	22	2.5	22	76	5	58	18	23	16	41	1.89
45747077--45747134	21	2.7	22	81	10	66	24	13	20	41	1.89
45749505--45749752	136	1.8	136	79	3	293	31	26	20	21	1.98
45754465--45754535	19	3.7	19	80	14	83	57	8	0	33	1.29
45754545--45754604	10	6.0	10	70	14	52	65	3	5	26	1.29
45754546--45754604	19	2.9	19	76	16	57	66	3	5	25	1.28
45755019--45755058	20	2.0	21	85	5	55	72	0	25	2	0.97
45755930--45755978	18	2.5	19	83	9	55	40	0	2	57	1.10
45756860--45756907	23	2.1	23	88	0	69	41	45	2	10	1.50
45756874--45756908	18	1.9	18	100	0	70	40	51	0	8	1.33
45757010--45757076	9	7.4	9	85	6	91	25	10	22	41	1.85
45757331--45757367	3	12.0	3	94	5	65	64	2	0	32	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45760768--45760907	72	1.9	73	95	4	257	23	10	10	55	1.64
45763420--45763494	37	2.0	37	97	0	141	26	6	38	28	1.81
45764963--45765108	33	4.4	33	77	0	130	19	21	15	43	1.87
45769568--45769691	13	9.3	13	82	6	124	43	1	18	36	1.60
45777352--45777395	21	2.0	21	82	4	52	40	25	9	25	1.84
45788593--45788643	18	2.9	18	77	13	52	76	5	15	1	1.07
45788600--45788641	13	3.3	13	86	3	50	80	4	14	0	0.86
45789431--45789686	50	5.0	52	70	5	173	21	19	23	34	1.96
45789415--45789794	102	3.8	99	86	2	474	22	20	22	35	1.96
45789476--45789793	50	6.4	50	71	2	262	22	20	22	34	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208