genome.fa.s5.2.7.7.80.10.50.1000.208.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 ID=Chr05-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  64140413

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  208  of  208  ( 24913 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63840870--63840917	3	16.0	3	100	0	96	66	0	0	33	0.92
63841201--63841278	27	2.9	27	92	0	120	14	32	26	26	1.94
63841338--63841408	28	2.5	29	90	4	110	49	2	9	38	1.51
63856740--63856823	42	2.0	42	83	4	105	60	8	11	19	1.56
63869552--63869633	41	2.0	41	86	9	116	54	23	4	17	1.61
63870429--63870467	20	1.9	21	89	5	62	43	10	10	35	1.73
63870772--63870810	19	2.0	20	90	5	62	69	5	7	17	1.32
63873312--63873394	36	2.3	37	89	2	123	6	22	8	62	1.45
63881019--63881044	13	2.0	13	100	0	52	0	7	0	92	0.39
63886660--63886715	22	2.5	23	88	5	87	44	3	5	46	1.43
63888835--63888872	20	1.9	20	88	0	58	50	5	2	42	1.39
63890193--63890263	4	18.0	4	84	8	74	45	30	1	22	1.61
63891569--63891598	3	10.3	3	92	7	53	30	0	0	70	0.88
63894216--63894249	6	5.7	6	96	0	59	55	11	0	32	1.36
63903490--63903547	16	3.7	15	73	11	53	13	17	3	65	1.40
63912697--63912728	2	16.0	2	93	0	55	3	46	0	50	1.17
63920314--63920352	19	2.1	19	100	0	78	33	15	10	41	1.81
63925521--63925714	94	2.0	96	86	3	268	28	12	10	47	1.76
63948527--63948553	13	2.1	13	100	0	54	29	14	18	37	1.91
63958157--63958309	22	7.0	22	90	0	225	26	26	14	32	1.94
63966323--63966414	32	2.9	32	93	0	148	34	10	11	42	1.77
63974587--63974794	104	2.0	104	90	0	326	40	11	12	34	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63997128--63997165	18	2.2	18	90	9	62	31	0	2	65	1.06
63997770--63997820	24	2.1	24	96	0	93	29	0	23	47	1.52
64001184--64001221	18	2.2	18	90	9	62	31	0	2	65	1.06
64003237--64003297	31	2.0	31	86	0	86	44	16	6	32	1.73
64007659--64007704	21	2.2	21	84	7	58	39	0	2	58	1.10
64009690--64009728	19	2.1	19	90	0	60	35	0	0	64	0.94
64009665--64009728	30	2.0	31	85	8	85	40	0	0	59	0.97
64010355--64010386	16	2.1	16	94	5	57	62	0	0	37	0.95
64010380--64010430	19	2.6	21	81	9	63	58	0	3	37	1.16
64010735--64010799	29	2.3	27	81	7	67	33	4	0	61	1.16
64010756--64010788	10	3.2	10	91	8	57	27	3	0	69	1.03
64010807--64010853	18	2.6	18	83	6	60	40	6	0	53	1.27
64014994--64015056	30	2.1	30	96	0	117	60	4	6	28	1.42
64022663--64022688	12	2.2	12	100	0	52	42	15	7	34	1.75
64026623--64026668	6	8.0	6	90	4	60	2	17	8	71	1.21
64036034--64036061	5	5.6	5	100	0	56	0	39	0	60	0.97
64038399--64038485	14	6.0	15	66	20	51	59	1	2	36	1.17
64042512--64042760	50	4.8	50	84	3	282	20	28	23	27	1.99
64042511--64042760	100	2.4	104	86	5	337	20	28	23	27	1.99
64042855--64042886	13	2.5	13	94	0	55	56	12	0	31	1.37
64043098--64043155	30	1.9	30	89	0	89	31	24	3	41	1.71
64049188--64049219	12	2.4	14	90	10	50	65	0	3	31	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64050115--64050181	30	2.2	30	94	0	125	47	11	13	26	1.77
64058033--64058073	20	2.0	20	86	9	57	36	19	12	31	1.89
64060051--64060085	15	2.2	16	95	5	63	48	11	14	25	1.77
64068146--64068184	11	3.5	11	85	0	51	20	28	0	51	1.48
64068146--64068188	22	2.0	22	90	0	68	25	25	0	48	1.51
64068147--64068195	22	2.2	22	85	0	62	22	28	2	46	1.63
64069861--64069971	30	3.7	30	84	2	125	34	42	11	11	1.78
64070001--64070043	18	2.4	18	92	0	68	16	27	11	44	1.82
64070451--64070948	116	4.3	116	96	0	915	41	3	8	46	1.50
64073402--64073463	31	2.0	31	100	0	124	41	6	9	41	1.63
64076876--64076914	3	13.0	3	88	0	60	33	30	2	33	1.72
64082047--64082197	78	1.9	78	91	0	248	27	22	23	27	1.99
64089357--64089446	44	2.0	45	97	2	173	25	15	15	43	1.86
64103658--64103692	10	3.4	10	84	7	52	71	0	0	28	0.86
64109671--64109718	21	2.2	22	88	3	71	8	10	39	41	1.69
64109712--64109787	30	2.5	30	91	0	116	3	6	56	32	1.43
64109742--64109787	7	6.3	7	85	9	65	2	10	56	30	1.46
64109938--64109985	25	1.9	25	86	0	69	14	8	6	70	1.31
64112759--64112920	79	2.0	80	95	1	290	35	13	17	33	1.89
64113165--64113204	21	1.9	21	89	0	62	5	17	32	45	1.70
64113235--64113320	31	2.7	31	83	5	93	18	24	25	31	1.98
64114310--64114340	15	2.1	15	93	0	53	16	25	19	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64123215--64123291	31	2.5	30	77	10	84	29	20	23	25	1.99
64123422--64123491	32	2.2	32	87	5	97	20	21	12	45	1.84
64123498--64123657	7	22.9	7	77	11	105	6	3	48	41	1.46
64123498--64123657	13	11.4	14	77	11	105	6	3	48	41	1.46
64123498--64123650	35	4.2	35	76	15	130	6	3	48	41	1.45
64123574--64123657	29	3.0	28	82	6	82	3	4	46	45	1.41
64140203--64140284	31	2.6	32	71	9	80	29	19	20	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208

The End!