genome.fa.s5.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 ID=Chr05-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  64140413

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  121  of  208  ( 24913 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36988603--36988769	37	4.5	37	89	6	250	33	4	12	49	1.62
36988603--36988769	75	2.3	74	89	6	250	33	4	12	49	1.62
36988770--36988848	9	8.6	9	79	5	86	25	7	27	39	1.83
36989798--36990025	42	5.5	42	85	4	268	28	19	24	27	1.99
36991975--36992021	17	2.9	16	82	17	62	70	2	4	23	1.16
36992980--36993028	23	2.1	23	100	0	98	32	16	18	32	1.93
36993055--36993079	13	1.9	13	100	0	50	80	0	12	8	0.92
36995226--36995291	13	5.1	13	79	0	78	33	7	24	34	1.84
36999679--36999737	25	2.4	25	88	0	82	23	25	16	33	1.96
37001254--37001286	15	2.2	15	100	0	66	24	6	21	48	1.72
37006815--37006860	23	2.1	21	92	8	74	43	23	0	32	1.54
37007084--37007109	6	4.3	6	100	0	52	84	0	15	0	0.62
37009869--37009912	3	14.7	3	100	0	88	34	0	0	65	0.93
37011871--37011923	23	2.3	23	93	0	88	30	26	18	24	1.98
37013809--37013882	31	2.3	32	90	4	114	47	4	14	33	1.64
37014556--37014594	20	2.0	20	94	0	69	25	10	33	30	1.89
37014474--37016954	825	3.0	825	95	0	4379	23	14	21	40	1.91
37016204--37016244	20	2.0	21	90	4	66	26	9	31	31	1.89
37021782--37021816	12	2.9	12	91	0	52	0	37	22	40	1.55
37030096--37030213	33	3.5	33	84	2	155	13	9	37	39	1.77
37034817--37034911	37	2.6	37	82	0	109	31	15	13	38	1.87
37034826--37034931	37	2.8	37	78	4	106	33	16	13	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37035574--37035629	22	2.5	23	82	5	69	41	16	7	35	1.75
37044554--37044755	40	5.1	40	83	4	239	33	17	31	18	1.94
37044554--37044755	80	2.5	80	89	0	298	33	17	31	18	1.94
37044582--37044719	20	6.9	20	67	15	88	31	15	32	20	1.93
37052088--37052184	25	3.9	24	82	8	88	36	18	22	22	1.95
37056902--37056948	3	15.7	3	100	0	94	34	0	34	31	1.58
37056947--37056973	3	9.0	3	100	0	54	66	0	33	0	0.92
37056990--37057300	155	2.0	155	100	0	622	37	36	12	14	1.84
37063380--37063409	15	2.0	15	93	0	51	56	0	0	43	0.99
37064518--37064543	7	3.7	7	100	0	52	26	0	15	57	1.38
37065553--37065651	44	2.2	44	89	3	146	39	0	11	49	1.38
37065565--37065651	44	2.0	45	93	2	149	37	0	11	50	1.39
37065619--37065770	25	6.3	25	80	11	192	41	0	14	44	1.45
37065693--37065804	45	2.5	45	97	0	206	37	0	14	48	1.44
37069704--37069799	36	2.6	37	78	14	99	41	2	26	30	1.67
37071673--37071702	11	2.9	10	90	9	51	60	26	0	13	1.34
37072588--37072639	20	2.5	20	87	12	70	46	21	23	9	1.80
37077885--37078003	44	2.7	44	82	2	141	31	23	16	28	1.96
37077994--37078478	128	3.8	128	94	0	835	25	23	20	30	1.98
37085300--37085334	2	17.5	2	100	0	70	51	0	0	48	1.00
37087666--37087714	26	2.0	25	84	8	64	26	18	4	51	1.64
37088402--37088427	8	3.2	8	100	0	52	53	11	0	34	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37092217--37092335	23	5.2	23	78	9	136	30	25	20	24	1.99
37092224--37092338	46	2.5	46	91	0	185	29	24	21	24	1.99
37096514--37096748	43	5.6	43	78	9	234	22	18	25	34	1.96
37096514--37096740	42	5.4	42	78	8	237	22	17	25	34	1.95
37096511--37096748	85	2.8	84	91	1	361	22	18	26	33	1.96
37098664--37098720	26	2.1	27	83	3	71	56	5	8	29	1.52
37098685--37098728	19	2.2	20	88	8	72	54	0	6	38	1.27
37101597--37101697	40	2.6	38	87	3	139	50	7	4	36	1.53
37103811--37103865	14	3.7	14	78	21	67	32	1	0	65	1.03
37105815--37106429	307	2.0	307	84	1	813	28	19	21	29	1.98
37108368--37108418	19	2.7	18	80	14	50	1	21	0	76	0.88
37128516--37128559	15	2.9	15	89	0	70	11	68	0	20	1.20
37128516--37128559	5	8.8	5	94	0	61	11	68	0	20	1.20
37130263--37130291	3	9.7	3	100	0	58	34	0	31	34	1.58
37131809--37131835	14	1.9	14	100	0	54	37	22	25	14	1.93
37136725--37136768	18	2.5	17	82	13	54	38	6	15	38	1.75
37137733--37137781	24	2.0	24	96	0	89	24	48	0	26	1.51
37139902--37139974	26	2.7	27	83	8	96	31	10	31	26	1.90
37139902--37140002	27	3.8	26	81	5	87	31	12	29	25	1.93
37144501--37144579	40	2.0	40	84	0	104	37	17	18	25	1.93
37144660--37144936	41	6.8	41	79	6	294	22	15	30	31	1.95
37145301--37145347	22	2.2	21	85	11	60	23	0	27	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37145301--37145437	7	19.4	7	73	10	50	20	0	31	47	1.56
37145362--37145440	7	11.1	7	75	15	56	17	0	35	46	1.49
37146796--37146849	20	2.7	20	76	0	54	51	1	0	46	1.11
37148145--37148202	29	2.0	29	93	0	98	37	17	17	27	1.92
37150632--37150670	21	2.0	21	85	10	55	28	5	5	61	1.39
37154588--37154642	22	2.5	21	77	14	58	36	0	1	61	1.06
37154605--37154639	13	2.6	14	90	4	54	37	0	2	60	1.12
37154605--37154639	7	5.1	7	93	6	54	37	0	2	60	1.12
37154716--37154828	43	2.7	42	78	5	122	23	18	23	33	1.97
37156617--37156642	3	8.7	3	100	0	52	0	34	0	65	0.93
37164674--37164704	16	2.0	16	93	6	55	51	16	6	25	1.68
37168574--37168630	16	3.5	17	76	9	57	54	10	7	28	1.60
37171434--37171864	82	5.4	80	82	8	452	47	10	11	30	1.74
37171561--37171690	42	3.3	42	63	25	100	48	8	10	33	1.67
37171487--37171888	159	2.5	162	85	4	519	47	10	11	30	1.74
37171487--37171888	82	5.0	82	84	4	494	47	10	11	30	1.74
37175348--37175372	13	1.9	13	100	0	50	16	4	0	80	0.87
37176827--37176933	46	2.4	45	93	4	180	37	10	24	28	1.88
37183720--37183843	46	2.7	46	88	0	176	36	10	23	29	1.88
37186455--37186555	51	2.0	51	94	0	175	35	19	15	28	1.93
37192044--37192090	16	2.9	16	90	3	76	12	21	4	61	1.48
37192595--37192694	49	2.0	49	82	3	121	33	12	11	44	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37198769--37198811	22	1.9	23	85	4	61	55	0	2	41	1.12
37200535--37200590	29	1.9	29	82	7	69	25	3	21	50	1.65
37202384--37202445	30	2.1	30	93	0	106	54	4	12	27	1.58
37202648--37202705	22	2.6	23	81	8	57	62	5	6	25	1.42
37202670--37202731	23	2.7	22	75	5	61	59	3	3	33	1.29
37204146--37204226	42	1.9	42	84	0	108	29	27	18	24	1.98
37204282--37204589	96	3.3	94	73	13	296	31	21	15	31	1.95
37204146--37204980	44	18.9	44	71	10	407	28	21	18	31	1.97
37204327--37204605	89	3.1	87	71	14	251	30	22	15	31	1.95
37204201--37204680	181	2.7	181	85	1	640	30	20	17	31	1.96
37204519--37204766	129	1.9	130	82	2	311	29	19	18	31	1.96
37206189--37206323	53	2.6	52	86	1	180	9	27	20	42	1.83
37206195--37206332	52	2.6	53	87	1	188	9	28	21	41	1.84
37215748--37215790	16	2.7	16	82	10	52	53	2	2	41	1.26
37215931--37215993	32	2.0	32	83	0	81	42	6	6	44	1.55
37216332--37216406	25	3.0	25	100	0	150	40	4	16	40	1.67
37222863--37223205	51	6.8	50	77	10	324	29	26	15	28	1.96
37222863--37223205	102	3.4	103	84	6	427	29	26	15	28	1.96
37232703--37232880	40	4.3	43	72	10	111	36	20	19	23	1.95
37233676--37233778	41	2.5	41	98	0	197	23	28	21	27	1.99
37233674--37233883	41	5.1	40	83	6	163	26	25	19	28	1.99
37235147--37235172	13	2.0	13	100	0	52	61	23	0	15	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37240860--37240968	43	2.5	44	75	11	109	26	22	22	27	1.99
37244716--37245014	152	2.0	151	95	0	544	29	10	22	38	1.86
37247548--37247663	43	2.7	43	76	12	121	24	22	25	28	1.99
37258920--37259105	50	3.8	49	82	3	196	26	24	27	21	1.99
37260474--37260498	13	1.9	13	100	0	50	56	4	16	24	1.57
37265051--37265088	13	2.8	14	80	4	51	52	2	18	26	1.58
37275623--37275673	23	2.2	23	92	0	66	41	21	7	29	1.81
37278512--37278830	158	2.0	158	94	0	557	39	9	23	27	1.85
37282679--37282712	13	2.7	12	90	9	50	32	5	0	61	1.20
37286401--37286794	196	2.0	196	94	0	689	29	26	13	29	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208