Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr05 ID=Chr05-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  64140413

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  44  of  208  ( 24913 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12180267--12180310
7
6.1
7
92
5
70
27
2
2
68
1.14
12180269--12180317
22
2.2
22
85
7
64
32
2
2
63
1.17
12184684--12184708
6
4.2
6
100
0
50
20
0
0
80
0.72
12184801--12184825
9
2.8
9
100
0
50
44
0
0
56
0.99
12184891--12184944
15
3.3
16
76
18
58
55
1
0
42
1.10
12185049--12185091
14
2.9
14
83
10
50
16
6
9
67
1.40
12196043--12196088
22
2.1
22
84
8
58
2
13
10
73
1.17
12196667--12196705
3
13.0
3
100
0
78
33
0
0
66
0.92
12196785--12196815
2
15.5
2
100
0
62
48
0
0
51
1.00
12200287--12200321
17
2.1
17
100
0
70
25
5
28
40
1.78
12201138--12201172
17
2.1
17
88
0
52
48
0
8
42
1.33
12202336--12202365
4
7.2
4
96
3
51
50
3
0
46
1.18
12221674--12221714
15
2.8
15
89
10
59
21
17
0
60
1.35
12222902--12223304
117
3.4
117
78
4
429
28
22
21
28
1.99
12223320--12223641
144
2.2
146
82
7
368
28
21
18
31
1.97
12229960--12230357
44
9.7
43
78
16
411
24
18
27
29
1.98
12229960--12230332
78
4.7
77
79
16
388
24
18
26
30
1.98
12230030--12230353
122
2.7
122
90
2
517
23
18
27
29
1.98
12230232--12230378
44
3.3
44
88
3
154
25
20
23
30
1.98
12231169--12231226
19
2.7
22
84
10
68
36
8
17
37
1.80
12231428--12231472
23
2.0
23
86
0
63
24
0
13
62
1.31
12231935--12231978
23
2.0
22
90
4
70
34
6
2
56
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12236774--12236822
24
2.0
24
96
0
89
32
18
0
48
1.48
12237272--12237325
18
3.1
18
71
17
60
48
7
0
44
1.31
12237314--12237352
18
2.1
19
85
4
53
48
5
5
41
1.47
12240235--12240317
25
3.3
25
75
12
73
24
22
19
33
1.97
12247615--12247674
25
2.4
25
77
0
66
21
28
18
31
1.97
12253103--12253160
30
1.9
30
89
0
89
55
13
3
27
1.55
12254146--12254175
3
10.0
3
92
0
51
30
0
3
66
1.07
12256394--12256432
19
2.1
19
95
0
69
0
46
10
43
1.37
12257529--12257566
16
2.4
16
90
0
58
31
0
34
34
1.58
12257545--12257635
45
2.0
44
87
2
128
31
5
28
34
1.80
12260333--12260377
11
4.1
11
79
0
54
22
8
11
57
1.60
12260335--12260385
22
2.3
22
82
0
66
21
5
9
62
1.47
12265764--12265831
28
2.4
30
78
9
79
67
0
4
27
1.09
12269411--12269450
9
4.4
9
87
0
53
50
0
2
47
1.14
12271725--12271765
20
2.0
20
85
0
55
12
19
17
51
1.76
12276001--12276138
10
14.9
9
67
15
68
32
2
2
62
1.22
12276084--12276135
18
3.0
17
81
10
61
28
0
1
69
0.99
12276086--12276145
17
3.6
16
80
10
66
28
0
3
68
1.05
12279847--12279885
16
2.4
17
86
4
62
46
7
0
46
1.31
12283145--12283217
27
2.6
28
87
8
96
39
8
1
50
1.41
12283284--12283350
27
2.5
27
92
0
107
28
28
26
16
1.97
12283394--12283505
4
28.0
4
74
18
76
71
0
28
0
0.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12283395--12283540
43
3.4
43
85
9
203
70
0
29
0
0.87
12283481--12283563
34
2.5
33
81
13
89
67
0
32
0
0.91
12283394--12283532
48
2.9
48
83
8
142
70
0
29
0
0.88
12283395--12283567
86
2.0
84
86
8
244
70
0
29
0
0.87
12283419--12283554
43
3.2
42
82
14
129
67
0
32
0
0.91
12283855--12283879
12
2.1
12
100
0
50
68
8
16
8
1.38
12284272--12284327
27
2.1
27
89
0
85
44
12
32
10
1.77
12285299--12285329
14
2.2
14
100
0
62
22
35
6
35
1.80
12290060--12290098
19
2.2
18
86
9
53
48
23
0
28
1.51
12290182--12290220
20
2.0
21
85
10
55
66
10
0
23
1.22
12290357--12290432
27
2.8
26
82
4
89
22
30
23
23
1.99
12290482--12290549
27
2.5
28
95
4
122
47
0
10
42
1.37
12294777--12294817
17
2.3
19
76
16
52
36
14
14
34
1.87
12299466--12299587
37
3.3
37
66
11
106
24
18
26
31
1.97
12299441--12299550
36
3.0
37
66
10
100
26
17
26
30
1.97
12299442--12299594
73
2.1
73
97
0
288
24
16
26
32
1.97
12306010--12306099
42
2.1
42
87
0
126
46
16
21
15
1.84
12306028--12306144
42
2.8
42
86
0
144
45
15
22
17
1.85
12306026--12306182
21
7.5
21
73
0
107
45
14
22
17
1.85
12307714--12307835
57
2.1
58
87
1
183
45
6
18
29
1.75
12311380--12311490
19
5.8
19
89
0
177
39
9
13
37
1.76
12311387--12311490
38
2.7
38
98
0
199
40
8
12
38
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12311380--12311516
19
6.9
21
85
4
114
38
8
14
38
1.76
12312002--12312079
30
2.4
32
82
16
83
19
5
3
71
1.20
12312135--12312192
21
2.6
22
81
13
66
27
3
3
65
1.25
12315865--12315928
28
2.2
30
83
5
87
57
0
6
35
1.24
12323204--12323252
24
2.1
22
85
7
62
63
2
2
32
1.17
12324316--12324363
19
2.5
20
79
6
53
52
4
12
31
1.58
12329624--12329657
12
2.8
12
81
0
50
29
5
2
61
1.34
12329677--12329733
21
2.5
23
77
16
64
38
3
3
54
1.35
12329694--12329733
21
1.9
21
94
0
71
40
2
5
52
1.37
12329745--12329783
18
2.2
18
95
0
69
38
5
2
53
1.37
12330790--12330833
4
10.8
4
90
4
52
75
6
0
18
1.02
12331121--12331199
35
2.2
36
81
4
97
58
3
2
35
1.30
12341931--12342037
46
2.3
46
85
4
146
42
16
18
21
1.89
12343151--12343183
13
2.4
14
90
10
59
36
6
0
57
1.23
12343155--12343186
13
2.5
13
100
0
64
34
6
0
59
1.23
12343257--12343289
4
8.0
4
96
3
57
51
0
0
48
1.00
12345337--12345698
45
8.0
45
76
4
334
28
17
25
28
1.97
12345337--12345597
91
2.9
91
92
0
425
29
18
24
27
1.98
12345382--12345698
136
2.3
135
81
4
336
28
17
25
28
1.98
12345435--12345732
134
2.2
136
79
5
311
27
18
24
29
1.98
12345711--12345941
40
5.5
40
70
11
176
26
19
19
33
1.96
12345666--12345948
85
3.3
85
92
0
440
27
19
19
32
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12347401--12347432
15
2.1
16
94
5
57
25
0
6
68
1.12
12347400--12347444
15
3.0
15
84
9
56
28
2
4
64
1.25
12347482--12347520
20
1.9
21
89
5
62
38
2
5
53
1.37
12347462--12347519
22
2.5
24
77
5
75
36
3
5
55
1.39
12347532--12347569
17
2.2
18
95
4
69
36
5
5
52
1.47
12348544--12348605
30
2.1
30
81
6
72
48
1
3
46
1.28
12349772--12349956
101
1.8
102
90
3
302
23
17
27
31
1.97
12349768--12349954
51
3.7
50
76
4
205
24
17
27
31
1.97
12352273--12352334
30
2.1
30
96
0
115
24
3
14
58
1.51
12354895--12354948
22
2.2
25
84
15
69
61
3
0
35
1.14
12363187--12363221
10
3.5
10
100
0
70
68
0
0
31
0.90
12363313--12363343
9
3.4
9
90
0
53
48
12
9
29
1.73
12363426--12363496
20
3.6
19
79
9
63
53
5
4
36
1.44
12363453--12363501
19
2.6
19
84
9
57
53
4
2
40
1.32
12363492--12363537
19
2.6
17
83
10
56
58
2
0
39
1.10
12363502--12363556
21
2.8
19
84
10
74
61
1
0
36
1.06
12363862--12363902
21
1.9
22
90
5
66
56
12
12
19
1.67
12367027--12367069
18
2.3
19
88
11
63
13
16
0
69
1.19
12378351--12378403
26
2.0
26
82
13
65
47
3
1
47
1.31
12382780--12382829
2
25.0
2
100
0
100
50
0
0
50
1.00
12383004--12383054
3
17.0
3
76
8
50
56
0
7
35
1.28
12382991--12383054
30
2.3
28
77
15
69
56
0
10
32
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12383004--12383054
12
4.2
12
82
9
59
56
0
7
35
1.28
12383649--12383673
2
12.5
2
100
0
50
52
0
0
48
1.00
12388286--12388325
20
2.0
20
95
0
71
37
10
27
25
1.88
12393668--12393695
2
14.0
2
100
0
56
50
0
0
50
1.00
12394017--12394069
3
18.7
3
83
11
67
30
1
1
66
1.13
12394470--12394509
20
2.0
20
95
0
71
62
5
0
32
1.17
12396434--12396505
29
2.3
31
81
13
85
56
9
2
30
1.46
12396763--12396790
6
4.7
6
100
0
56
85
0
0
14
0.59
12397983--12398016
17
2.0
17
88
0
50
61
2
2
32
1.26
12399238--12399297
30
2.0
30
83
3
75
41
0
38
20
1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208