genome.fa.s5.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  101  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37945861--37945911	26	2.0	26	84	0	66	43	0	0	56	0.99
37945897--37945927	16	1.9	16	93	0	53	48	0	3	48	1.17
37945907--37945975	30	2.4	28	79	11	77	50	0	1	47	1.09
37949053--37949093	2	20.5	2	100	0	82	0	48	0	51	1.00
37956629--37956700	37	1.9	37	82	0	90	29	26	8	36	1.86
37975718--37975802	2	43.5	2	79	11	88	42	0	52	3	1.18
37988117--37988153	17	2.1	18	95	5	67	43	2	0	54	1.14
37990082--37990121	13	3.1	14	79	17	50	47	0	0	52	1.00
37990176--37990217	17	2.5	17	85	11	52	23	0	9	66	1.21
37990195--37990243	15	3.2	15	82	2	53	30	0	2	67	1.02
37990173--37990236	31	2.1	31	82	5	76	26	0	6	67	1.14
37990195--37990240	19	2.5	20	79	13	53	30	0	2	67	1.03
37990245--37990290	20	2.3	21	81	11	60	54	0	0	45	0.99
37992066--37992109	23	1.9	23	90	0	70	36	11	11	40	1.77
37995391--37995428	2	19.0	2	100	0	76	50	0	50	0	1.00
38001781--38001805	7	3.6	7	100	0	50	0	12	28	60	1.32
38020645--38020674	2	15.0	2	92	0	51	50	3	46	0	1.18
38024930--38025293	183	2.0	183	88	4	547	40	7	29	22	1.82
38025939--38026053	35	3.3	35	83	0	149	18	15	20	46	1.85
38025920--38026051	70	1.9	70	85	0	183	18	15	19	46	1.84
38029940--38029966	8	3.4	8	100	0	54	25	0	37	37	1.57
38030405--38030500	6	15.8	6	67	28	53	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38030389--38030524	31	4.4	32	73	22	112	46	0	0	53	1.00
38030354--38030499	48	3.0	46	84	14	156	49	0	0	50	1.00
38030358--38030525	23	7.3	23	76	19	124	48	0	0	51	1.00
38030370--38030499	26	5.2	25	80	15	137	49	0	0	50	1.00
38030370--38030523	51	3.1	49	78	11	161	48	0	0	51	1.00
38030644--38030678	16	2.2	16	94	0	61	51	0	2	45	1.16
38033988--38034033	17	2.6	18	75	10	58	52	0	6	41	1.27
38034106--38034173	10	6.6	10	76	17	59	41	0	0	58	0.98
38034107--38034163	19	2.9	19	92	5	87	42	0	0	57	0.98
38034103--38034171	19	3.4	20	80	13	79	42	0	0	57	0.98
38037669--38037853	49	3.8	47	77	9	174	38	18	17	25	1.93
38037661--38037852	48	3.9	47	78	11	183	38	18	17	25	1.93
38044269--38044341	35	2.1	35	100	0	146	42	19	10	27	1.84
38056676--38056730	22	2.5	22	97	2	103	41	16	14	27	1.87
38062427--38062499	32	2.5	27	72	19	83	38	9	23	28	1.86
38062788--38063087	147	2.0	147	94	0	537	24	14	18	43	1.87
38082881--38082940	21	2.7	21	87	7	75	30	31	6	31	1.83
38082895--38082940	24	1.9	24	95	0	83	30	30	6	32	1.83
38083563--38083628	12	5.8	12	82	8	75	37	31	3	27	1.72
38083566--38083645	21	3.7	21	77	12	56	37	30	5	27	1.78
38094051--38094099	2	24.5	2	95	0	89	51	2	0	46	1.12
38095483--38095593	41	2.7	41	82	0	141	41	14	18	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38110740--38110797	15	4.0	15	72	12	50	75	0	1	22	0.89
38110741--38110797	20	3.2	19	79	13	59	77	0	1	21	0.86
38114639--38114688	23	2.2	23	79	13	59	54	2	0	44	1.11
38116260--38116297	3	12.7	3	89	10	60	63	2	0	34	1.09
38118538--38118567	14	2.1	14	93	0	51	76	3	13	6	1.11
38125230--38125559	165	2.0	166	98	1	637	29	18	26	24	1.98
38128614--38128650	2	18.5	2	100	0	74	48	0	0	51	1.00
38128726--38128763	2	19.0	2	100	0	76	50	0	0	50	1.00
38133495--38133526	5	6.8	5	92	7	50	0	15	0	84	0.63
38133492--38133526	18	1.9	18	88	0	52	0	17	0	82	0.66
38138371--38138543	86	2.0	86	95	4	314	58	8	9	23	1.56
38156648--38156719	34	2.1	35	92	2	119	47	16	15	20	1.83
38159885--38159936	22	2.3	23	78	15	56	55	0	1	42	1.10
38159927--38159973	22	2.2	22	84	3	60	53	0	2	44	1.12
38165525--38165571	20	2.3	20	100	0	94	29	14	6	48	1.69
38169613--38169726	60	1.9	59	85	5	158	29	7	18	44	1.76
38169896--38169959	24	2.7	23	80	4	74	31	9	21	37	1.85
38175466--38175513	17	3.0	17	73	14	57	45	0	2	52	1.12
38175500--38175539	15	2.6	16	88	7	57	62	2	0	35	1.09
38182859--38183108	83	3.0	82	88	1	349	29	10	29	31	1.89
38183102--38183186	44	1.9	44	90	0	134	35	17	21	25	1.95
38187967--38188026	30	2.0	30	93	6	104	45	6	35	13	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38187923--38188137	78	2.8	78	87	0	304	42	10	29	17	1.82
38188046--38188107	30	2.1	30	93	0	106	45	6	35	12	1.68
38188429--38188546	62	1.9	62	81	11	145	40	3	1	54	1.27
38206946--38207061	57	2.0	57	96	0	214	22	18	4	55	1.60
38210756--38210783	6	4.7	6	100	0	56	64	0	0	35	0.94
38226005--38226045	20	2.1	19	86	4	55	24	24	7	43	1.79
38236440--38236806	174	2.1	170	85	4	495	28	17	13	41	1.87
38240078--38240399	161	2.0	160	83	3	405	35	21	15	27	1.94
38243903--38244074	73	2.4	73	83	5	197	34	16	10	37	1.83
38249655--38249691	2	18.5	2	88	0	56	0	54	0	45	1.00
38254181--38254350	93	1.8	93	86	5	227	35	19	17	27	1.94
38257233--38257265	11	2.9	12	86	13	52	21	0	0	78	0.75
38258792--38258825	2	17.5	2	87	6	52	47	0	0	52	1.00
38258981--38259009	2	15.0	2	92	7	51	48	0	0	51	1.00
38258797--38259193	182	2.2	184	93	4	703	43	7	9	38	1.67
38258876--38259154	91	3.1	91	63	20	229	41	9	11	36	1.74
38267076--38267137	31	2.0	31	96	0	115	37	12	11	38	1.80
38275780--38275976	86	2.3	86	89	5	299	55	17	9	17	1.67
38277374--38277505	68	1.9	70	83	7	171	47	4	16	31	1.67
38278951--38279014	24	2.5	25	82	7	76	32	9	3	54	1.48
38289051--38289094	21	2.1	21	87	4	63	34	13	9	43	1.76
38292190--38292348	78	2.0	78	93	0	273	14	33	10	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38309776--38309831	29	1.9	29	88	0	85	32	3	1	62	1.23
38310097--38310148	25	2.0	25	85	10	70	65	0	0	34	0.93
38310102--38310189	30	2.9	30	75	8	74	57	1	0	40	1.06
38311095--38311137	21	2.0	21	90	0	68	48	16	9	25	1.75
38314779--38314813	15	2.3	15	95	0	61	28	25	2	42	1.69
38317960--38318002	17	2.7	16	79	10	52	46	0	0	53	1.00
38338060--38338095	2	18.5	2	94	5	65	0	47	0	52	1.00
38347045--38347087	20	2.0	20	86	8	59	39	4	2	53	1.34
38365610--38365674	31	2.1	31	85	0	85	50	10	6	32	1.62
38371873--38371914	20	2.0	20	86	4	57	2	21	4	71	1.16
38379646--38379968	127	2.6	126	90	3	497	25	16	20	37	1.93
38381373--38381398	3	8.7	3	100	0	52	0	34	0	65	0.93
38387610--38387717	56	2.0	56	85	5	150	25	18	32	23	1.97
38403085--38403125	19	2.2	19	86	0	55	41	17	26	14	1.88
38411540--38411591	26	2.0	26	92	0	86	32	7	19	40	1.80
38414489--38414514	8	3.2	8	100	0	52	0	42	0	57	0.98
38416859--38416955	48	2.0	48	100	0	194	37	8	20	34	1.83
38417147--38417171	2	12.5	2	100	0	50	0	52	0	48	1.00
38418482--38418506	6	4.2	6	100	0	50	20	0	0	80	0.72
38419218--38419650	108	4.0	108	85	3	516	31	18	20	30	1.96
38419218--38419650	215	2.0	216	83	2	548	31	18	20	30	1.96
38437199--38437229	3	10.3	3	100	0	62	32	0	35	32	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38445783--38445808	2	13.0	2	100	0	52	50	0	0	50	1.00
38447423--38447465	17	2.7	15	83	16	52	65	4	4	25	1.32
38448459--38448490	16	2.0	16	93	0	55	0	28	0	71	0.86
38449030--38449063	12	2.9	12	91	4	52	32	5	0	61	1.20
38471505--38471547	20	2.2	20	100	0	86	37	11	13	37	1.82
38472967--38473212	82	3.0	82	96	0	447	26	18	23	31	1.98
38474754--38474816	26	2.4	26	91	0	108	44	30	9	15	1.79
38476327--38476352	2	13.0	2	100	0	52	50	0	50	0	1.00
38483886--38483932	2	23.5	2	95	0	85	48	2	0	48	1.13
38488089--38488145	22	2.6	23	80	8	64	52	1	1	43	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103