genome.fa.s5.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  32  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12045827--12045876	23	2.1	24	85	10	68	60	2	18	20	1.46
12045835--12045882	23	2.0	24	84	4	62	66	0	14	18	1.25
12046945--12047078	42	3.2	42	82	1	169	26	14	32	25	1.95
12049187--12049259	22	3.4	22	81	7	87	34	21	9	34	1.86
12049188--12049319	43	3.1	43	77	7	135	34	25	9	31	1.87
12049203--12049269	22	3.1	22	79	12	84	34	22	7	35	1.82
12049207--12049394	42	4.4	42	77	13	170	34	26	9	29	1.88
12049207--12049364	85	1.9	84	84	6	212	34	27	8	29	1.86
12049221--12049377	21	7.4	21	73	13	110	33	28	8	29	1.87
12049455--12049500	21	2.1	22	92	4	76	36	26	4	32	1.76
12049461--12049531	21	3.3	21	84	2	79	39	29	5	25	1.78
12049636--12049678	22	2.0	22	85	0	59	30	16	13	39	1.87
12063607--12063646	5	8.0	5	91	0	62	35	0	22	42	1.54
12064433--12064492	30	2.1	29	81	6	68	31	8	21	38	1.83
12073428--12073519	29	3.5	29	70	25	103	33	20	13	32	1.91
12073428--12073542	49	2.3	49	96	0	212	32	20	14	33	1.93
12077468--12077511	22	2.0	22	86	0	61	31	6	18	43	1.76
12077542--12077567	13	2.0	13	100	0	52	30	15	7	46	1.74
12085856--12085896	21	1.9	22	85	5	57	17	26	4	51	1.65
12086595--12086754	68	2.4	64	85	5	194	38	8	15	36	1.79
12088475--12088577	38	2.6	40	84	3	138	22	36	16	24	1.94
12089753--12089830	40	1.9	42	84	5	106	38	12	15	33	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12091522--12091676	28	5.4	29	81	9	192	38	14	10	36	1.81
12091522--12091676	58	2.7	57	80	11	190	38	14	10	36	1.81
12091513--12091674	86	1.9	86	88	0	243	35	14	11	38	1.82
12093006--12093084	29	2.8	29	90	1	115	37	16	11	34	1.85
12101068--12101099	10	3.1	11	86	13	50	46	0	6	46	1.27
12101124--12101205	37	2.2	37	93	0	146	26	7	36	29	1.83
12101695--12101742	21	2.3	21	96	0	87	47	14	16	20	1.82
12113420--12113460	15	2.7	16	88	7	59	26	2	19	51	1.59
12113416--12113461	15	3.1	15	81	9	58	23	2	17	56	1.52
12114558--12114617	28	2.1	28	90	6	95	31	20	23	25	1.98
12117540--12117579	20	2.0	20	85	0	53	15	32	12	40	1.84
12118225--12118266	20	2.2	19	84	16	52	30	4	26	38	1.77
12118261--12118342	37	2.2	37	93	0	137	26	9	36	26	1.88
12126353--12126419	33	2.0	33	91	5	109	41	13	14	29	1.85
12135597--12135698	40	2.6	40	84	7	131	20	14	41	23	1.89
12135597--12135694	37	2.6	37	85	8	117	19	14	42	23	1.87
12136038--12136083	21	2.2	21	84	0	56	26	26	19	28	1.99
12138650--12138703	28	1.9	28	81	7	65	44	1	7	46	1.42
12148526--12148582	25	2.3	25	84	0	69	22	33	15	28	1.95
12149777--12149820	20	2.2	20	100	0	88	36	15	13	34	1.87
12150661--12150693	17	1.9	17	93	0	57	21	33	12	33	1.90
12155195--12155235	21	1.9	22	90	5	66	51	7	24	17	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12155195--12155241	21	2.2	21	84	3	58	55	8	21	14	1.66
12165790--12166006	39	5.6	39	81	1	188	23	35	14	27	1.93
12167145--12167192	20	2.3	20	89	10	71	0	29	0	70	0.87
12175278--12175307	2	15.0	2	100	0	60	50	0	0	50	1.00
12176229--12176430	35	5.8	35	79	6	196	28	27	5	39	1.78
12176229--12176430	70	2.9	70	82	4	239	28	27	5	39	1.78
12179133--12179271	39	3.7	37	85	4	138	28	37	11	22	1.89
12180867--12180926	3	20.7	3	76	19	56	35	38	1	25	1.66
12180865--12180924	23	2.6	23	91	0	93	33	40	1	25	1.66
12180938--12181041	43	2.4	43	82	6	122	20	39	18	22	1.92
12183045--12183090	15	3.2	15	84	6	60	0	30	0	69	0.89
12187286--12187410	65	1.9	65	88	6	191	39	26	15	19	1.91
12187399--12187429	16	1.9	16	93	0	53	25	48	0	25	1.52
12194332--12194387	25	2.2	26	84	9	80	14	26	14	44	1.83
12194407--12194465	5	11.2	5	76	8	55	0	22	1	76	0.88
12194619--12194682	33	1.9	33	84	6	85	29	29	12	28	1.93
12194728--12194808	35	2.3	35	91	4	128	40	29	8	20	1.83
12203113--12203175	28	2.2	29	85	2	83	31	19	15	33	1.93
12203128--12203186	28	2.0	28	83	6	73	35	23	16	23	1.95
12213464--12213612	74	2.0	74	93	2	255	20	24	8	46	1.78
12215254--12215326	28	2.6	29	74	22	73	32	20	19	27	1.97
12216435--12216475	15	2.5	17	76	15	50	46	0	12	41	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12218117--12218215	46	2.2	46	98	1	191	30	18	18	33	1.94
12220081--12220354	28	9.5	28	79	7	273	39	12	12	36	1.80
12220104--12220354	57	4.4	57	78	7	206	40	12	10	35	1.78
12226408--12226510	38	2.6	39	83	7	120	22	19	36	21	1.95
12227717--12227860	63	2.3	61	79	5	153	26	22	18	33	1.96
12228850--12228883	12	3.0	12	87	12	54	44	5	0	50	1.26
12232118--12232145	2	14.0	2	100	0	56	50	0	0	50	1.00
12236034--12236062	9	3.3	9	95	4	51	0	17	24	58	1.38
12238371--12238403	2	16.5	2	100	0	66	48	0	0	51	1.00
12241009--12241113	49	2.1	49	94	0	183	24	37	15	22	1.93
12242695--12242826	43	3.1	43	83	2	140	24	18	34	21	1.96
12242821--12242876	23	2.4	23	93	0	103	25	3	41	30	1.72
12243124--12243224	40	2.5	40	85	0	121	32	23	14	28	1.95
12246836--12246875	20	2.0	20	90	0	62	15	35	10	40	1.80
12247569--12247724	37	4.2	37	94	3	260	28	10	35	25	1.89
12247978--12248041	22	2.9	22	83	2	83	32	23	21	21	1.98
12252265--12252319	28	2.0	29	89	7	87	25	20	23	30	1.98
12254775--12254848	34	2.2	35	80	7	89	32	13	24	29	1.93
12254936--12254979	19	2.3	19	84	0	61	27	22	18	31	1.97
12265557--12265594	19	2.0	19	94	0	67	28	0	28	42	1.56
12271934--12271977	22	2.0	22	90	0	70	36	25	11	27	1.90
12276237--12276276	20	2.1	20	86	9	57	27	17	20	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12282651--12282859	55	3.8	55	82	5	269	28	34	13	22	1.93
12282656--12282859	110	1.9	110	88	0	309	28	34	14	22	1.93
12293825--12293849	13	1.9	13	100	0	50	44	0	8	48	1.32
12297319--12297421	38	2.6	39	80	11	120	21	36	19	22	1.95
12307975--12308135	63	2.6	63	81	0	196	26	31	18	24	1.97
12309549--12309666	42	2.8	42	86	0	173	26	35	16	21	1.95
12311612--12311733	43	2.8	43	82	0	136	27	15	34	22	1.94
12317259--12317305	25	1.9	25	86	4	69	12	21	17	48	1.79
12317564--12317677	34	3.3	34	88	2	156	30	34	12	22	1.91
12317986--12318034	21	2.3	22	85	3	64	8	20	0	71	1.11
12320941--12320978	2	19.0	2	100	0	76	50	0	0	50	1.00
12321025--12321112	35	2.5	35	86	0	131	28	36	11	23	1.90
12325054--12325096	21	2.0	22	82	13	54	37	2	20	39	1.66
12336211--12336374	63	2.6	63	83	3	197	26	17	30	26	1.97
12341729--12341870	55	2.6	55	91	0	221	26	36	14	21	1.93
12350620--12350759	70	2.0	69	98	1	271	35	22	17	23	1.94
12351308--12351334	10	2.7	10	100	0	54	29	7	22	40	1.81
12363578--12363608	11	2.7	12	90	10	55	67	0	32	0	0.91
12365256--12365329	28	2.8	27	82	8	89	20	14	33	31	1.93
12374409--12374570	37	4.2	37	85	12	236	27	11	35	25	1.91
12374421--12374570	80	1.9	74	90	7	237	27	12	36	24	1.91
12375841--12375966	43	2.9	43	84	4	148	23	35	16	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12375872--12375968	43	2.3	43	90	0	149	25	34	16	23	1.95
12388213--12388252	20	2.0	21	90	5	64	70	5	2	22	1.19
12390599--12390667	27	2.6	26	82	13	79	0	28	0	71	0.87
12391597--12391644	19	2.6	18	83	3	60	37	6	0	56	1.25
12391597--12391639	19	2.3	19	88	4	61	41	4	0	53	1.21
12393162--12393347	67	2.8	68	88	3	263	24	12	27	35	1.92
12393162--12393310	35	4.5	32	77	12	147	22	12	28	36	1.90
12394076--12394109	15	2.3	15	90	5	52	58	5	11	23	1.55
12394843--12394998	37	4.2	37	90	3	217	23	35	10	30	1.88
12398993--12399041	20	2.5	20	86	0	71	42	16	8	32	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103