genome.fa.s5.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  85  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31453860--31454812	399	2.4	395	81	2	1068	35	20	11	32	1.89
31456529--31457481	199	4.8	199	83	2	1072	34	19	12	33	1.89
31456558--31457481	399	2.3	397	81	4	1076	34	19	12	33	1.89
31457315--31457610	163	1.8	162	81	4	371	37	18	11	32	1.86
31457315--31457644	163	2.0	162	79	4	351	37	17	11	32	1.86
31458326--31458641	162	1.9	163	96	0	589	38	15	13	32	1.86
31458889--31458954	32	2.1	32	100	0	132	51	9	15	24	1.72
31458890--31458947	16	3.6	17	71	19	61	50	10	12	27	1.72
31459396--31460334	199	4.7	198	81	4	989	34	20	11	33	1.89
31462049--31463616	200	7.9	199	80	5	1538	34	19	12	33	1.90
31462070--31463616	399	3.9	390	78	8	1395	34	19	12	33	1.90
31471069--31471125	30	1.9	29	85	3	78	40	8	15	35	1.79
31476459--31476574	58	2.0	58	100	0	232	36	15	15	32	1.89
31480321--31480445	34	3.7	34	98	0	241	24	13	25	36	1.92
31494239--31494265	2	13.5	2	100	0	54	51	0	0	48	1.00
31494265--31494289	2	12.5	2	100	0	50	52	0	48	0	1.00
31495963--31496018	25	2.2	25	81	12	62	1	21	3	73	1.08
31495983--31496019	16	2.2	17	86	13	51	0	24	2	72	0.97
31495977--31496022	19	2.3	20	81	3	58	0	19	2	78	0.86
31499660--31500157	23	21.8	23	76	6	348	31	12	32	22	1.91
31500244--31500313	23	3.0	24	85	8	101	35	12	28	22	1.91
31500262--31500349	23	3.8	23	80	0	68	37	14	22	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31503149--31503195	2	23.5	2	100	0	94	51	0	0	48	1.00
31503232--31503265	15	2.4	14	86	13	52	58	0	0	41	0.98
31510912--31510953	21	2.0	21	100	0	84	47	14	19	19	1.82
31514349--31514387	16	2.3	18	91	8	64	71	0	2	25	0.98
31514346--31514377	13	2.4	14	94	5	57	75	0	0	25	0.81
31520488--31520531	13	3.4	13	81	6	54	81	13	4	0	0.83
31522499--31522542	3	15.7	3	81	13	58	27	0	0	72	0.85
31529698--31529731	13	2.8	12	86	8	50	23	2	2	70	1.15
31535781--31535813	14	2.2	15	89	10	50	45	0	0	54	0.99
31549895--31549998	36	2.9	36	94	0	172	17	13	19	50	1.78
31559330--31559375	23	2.0	24	86	4	67	28	4	2	65	1.23
31559479--31559536	30	2.0	30	93	3	100	36	24	3	36	1.72
31559721--31559758	20	1.9	20	94	0	67	42	21	7	28	1.81
31569288--31569541	122	2.1	122	89	1	393	35	9	9	46	1.67
31573592--31573665	33	2.2	33	85	0	103	37	12	16	33	1.85
31578410--31578772	182	2.0	181	100	0	717	43	12	4	39	1.63
31593171--31593216	20	2.3	20	96	0	83	28	4	21	45	1.71
31593261--31593313	28	1.9	27	88	3	79	30	18	22	28	1.98
31593261--31593319	28	2.1	28	84	6	75	30	20	23	25	1.98
31597130--31597167	19	2.0	19	89	0	58	39	31	0	28	1.57
31600429--31600466	19	2.0	19	94	0	67	42	28	0	28	1.56
31601033--31601086	22	2.5	21	79	8	63	0	18	3	77	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31601040--31601087	11	4.3	11	86	2	51	0	16	2	81	0.79
31601039--31601091	9	5.4	9	78	14	52	0	18	1	79	0.83
31601040--31601094	22	2.5	22	87	0	74	0	18	1	80	0.81
31601050--31601095	11	3.9	12	86	11	60	0	19	0	80	0.71
31601168--31601218	25	2.0	25	85	7	68	5	43	0	50	1.26
31601651--31601686	19	1.9	19	88	5	56	77	2	19	0	0.88
31602746--31602907	53	3.1	53	93	0	261	27	10	27	34	1.90
31602885--31603072	93	2.0	93	91	0	304	30	10	23	35	1.89
31603860--31603901	4	10.8	4	85	10	52	26	0	0	73	0.83
31603856--31603897	18	2.4	17	84	11	57	26	0	0	73	0.83
31607459--31607493	17	2.0	18	88	5	54	68	8	5	17	1.35
31608025--31608067	11	3.9	11	90	0	59	30	20	18	30	1.97
31608025--31608067	22	2.0	22	90	0	68	30	20	18	30	1.97
31608233--31608377	64	2.3	64	91	1	229	33	16	14	35	1.89
31608384--31608415	12	2.7	12	90	0	55	34	9	15	40	1.80
31609270--31609296	2	13.5	2	100	0	54	51	0	0	48	1.00
31626018--31626067	23	2.2	23	81	0	55	56	2	2	40	1.22
31636105--31636153	13	3.8	13	79	12	57	28	2	0	69	1.00
31643217--31643255	20	1.9	21	89	5	62	66	7	5	20	1.36
31643472--31643505	17	2.1	17	88	5	52	55	0	0	44	0.99
31644206--31644230	13	1.9	13	100	0	50	24	4	0	72	1.02
31646741--31646767	14	1.9	14	100	0	54	29	0	11	59	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31650961--31651010	11	4.2	12	75	14	50	84	0	16	0	0.63
31650959--31651004	24	1.9	24	86	8	67	82	0	17	0	0.67
31650959--31651014	5	12.0	5	75	24	52	82	0	17	0	0.68
31651651--31651693	17	2.7	15	82	10	50	32	0	4	62	1.15
31652821--31652847	14	1.9	14	100	0	54	29	0	11	59	1.32
31654332--31654374	2	21.5	2	100	0	86	51	0	0	48	1.00
31655421--31655465	12	3.8	12	82	8	56	82	2	4	11	0.91
31655422--31655477	17	3.2	17	79	2	58	80	1	8	8	0.98
31657576--31657600	12	2.1	12	100	0	50	8	8	0	84	0.79
31658122--31658148	2	13.5	2	100	0	54	51	0	0	48	1.00
31662251--31662297	19	2.6	19	86	6	62	42	2	0	55	1.12
31662817--31662859	16	2.6	16	82	10	52	30	0	9	60	1.28
31662908--31662986	40	2.0	40	87	0	113	36	22	21	18	1.95
31672562--31672600	20	2.0	19	85	5	51	35	2	2	58	1.25
31675765--31677131	722	1.9	716	86	6	1925	26	18	9	44	1.81
31677756--31677936	103	1.8	101	85	8	264	36	9	1	51	1.45
31682328--31682486	55	2.9	54	81	2	138	32	10	18	38	1.85
31682324--31682508	28	6.7	28	77	1	158	33	10	17	38	1.84
31697796--31697833	13	2.9	13	92	0	58	63	2	0	34	1.09
31698349--31698529	89	2.0	90	89	7	280	52	9	2	35	1.46
31704368--31704392	13	1.9	13	100	0	50	48	8	0	44	1.32
31707938--31708069	27	4.9	27	76	0	102	40	17	10	31	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31707941--31708044	54	1.9	54	82	0	127	40	18	11	29	1.86
31707791--31708372	294	2.0	292	98	0	1110	39	15	11	33	1.84
31708238--31708599	27	13.4	27	75	6	250	38	17	10	33	1.84
31708135--31708599	55	8.6	55	76	5	329	39	16	10	33	1.83
31708518--31708590	25	2.8	25	73	20	62	36	19	12	31	1.88
31708120--31708599	217	2.2	216	80	5	504	39	16	10	33	1.83
31710508--31710622	58	2.0	59	89	1	178	52	6	17	24	1.67
31717818--31717894	31	2.5	31	86	0	109	49	7	18	24	1.74
31721402--31721574	84	2.1	84	93	0	292	33	15	19	31	1.93
31722376--31722442	31	2.2	30	76	15	75	26	0	8	64	1.23
31723486--31723606	15	7.8	15	75	18	81	75	1	20	2	1.01
31723474--31723526	27	2.0	25	82	7	61	77	1	13	7	1.06
31723471--31723593	15	8.3	14	75	16	97	77	0	17	4	0.98
31723481--31723606	31	4.0	30	79	14	105	75	1	19	3	1.02
31723512--31723620	34	3.2	34	81	8	100	76	0	20	2	0.97
31723515--31723620	15	6.4	16	77	16	76	76	0	19	2	0.97
31723547--31723618	24	3.0	24	80	13	76	77	1	18	2	0.96
31730342--31730384	18	2.4	18	84	3	52	48	2	4	44	1.36
31734425--31734453	12	2.5	12	94	5	51	72	0	0	27	0.85
31735078--31735115	19	2.0	19	94	0	67	28	0	28	42	1.56
31740574--31740606	16	2.0	17	88	5	50	21	12	0	66	1.23
31750329--31750378	21	2.2	24	82	10	61	34	2	22	42	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31752211--31752310	17	5.4	18	71	19	82	16	18	49	17	1.81
31752138--31752310	75	2.3	76	81	6	208	18	19	45	16	1.86
31752138--31752303	37	4.4	38	78	3	174	19	20	43	16	1.87
31765547--31765968	114	3.7	114	85	3	532	23	15	18	41	1.89
31765547--31765968	38	11.2	38	83	4	478	23	15	18	41	1.89
31765999--31766070	1	72.0	1	74	0	54	86	6	1	5	0.77
31765999--31766071	9	8.0	9	73	13	60	84	8	1	5	0.81
31765999--31766069	26	2.8	25	81	10	74	85	7	1	5	0.78
31766712--31766898	37	5.1	37	87	0	221	17	22	43	15	1.87
31767646--31767720	30	2.6	28	83	10	96	53	10	6	29	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103