genome.fa.s5.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr5
Parameters: 2 7 7 80 10 50 1000
Length:  39371879

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   

This is table  96  of  103  ( 12320 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35335165--35335226	19	2.8	24	70	27	64	59	0	0	40	0.97
35335153--35335213	31	2.0	31	83	3	79	62	0	0	37	0.96
35335379--35335427	20	2.5	19	84	12	64	63	0	0	36	0.95
35340815--35340867	24	2.3	23	83	9	63	45	0	1	52	1.11
35341334--35341364	11	2.9	11	95	4	55	16	0	0	83	0.64
35341332--35341364	16	2.1	15	94	5	57	18	0	0	81	0.68
35342338--35342391	19	2.7	19	78	15	56	59	5	0	35	1.21
35353728--35353769	22	1.9	22	85	0	57	14	26	9	50	1.73
35368577--35368610	12	2.8	12	100	0	68	11	17	35	35	1.87
35376268--35376292	2	12.5	2	100	0	50	48	0	0	52	1.00
35378380--35378624	23	10.7	23	72	6	167	32	11	17	39	1.85
35378380--35378623	45	5.3	45	79	5	186	31	11	17	39	1.85
35378380--35378606	68	3.3	69	78	7	196	30	11	17	40	1.84
35378444--35378621	91	2.0	91	85	2	241	32	10	16	41	1.82
35385506--35385546	21	2.0	21	90	0	64	31	2	2	63	1.20
35394160--35394197	19	2.1	19	95	5	69	57	5	5	31	1.43
35394648--35394716	34	2.0	34	94	0	120	49	23	8	18	1.75
35399839--35399919	26	3.1	26	98	1	153	50	7	11	30	1.65
35403125--35403197	20	3.3	20	66	23	56	67	1	8	23	1.26
35403124--35403235	47	2.4	47	98	1	215	64	1	9	24	1.34
35403148--35403226	28	3.1	28	63	30	77	63	2	11	22	1.40
35403924--35403953	14	2.1	14	93	0	51	33	43	3	20	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35406285--35406520	125	1.9	125	83	3	305	38	9	9	41	1.70
35409467--35409538	36	2.0	36	94	0	126	15	11	34	38	1.83
35416597--35416666	22	3.2	21	80	6	77	18	10	25	45	1.80
35416687--35416742	23	2.5	22	73	2	58	33	30	14	21	1.93
35416731--35416786	22	2.6	21	77	5	67	42	25	10	21	1.85
35418063--35418097	2	17.5	2	100	0	70	51	0	0	48	1.00
35418791--35418859	34	2.0	34	94	0	120	49	21	10	18	1.77
35429281--35429343	33	1.9	33	93	0	108	25	22	19	33	1.97
35443087--35443125	20	2.0	20	94	0	69	15	15	0	69	1.20
35451814--35451859	19	2.4	20	82	10	60	17	4	0	78	0.91
35456827--35456870	18	2.4	19	81	14	56	18	4	0	77	0.94
35465014--35465068	27	2.0	27	100	0	110	25	7	14	52	1.67
35468554--35468683	64	2.0	64	98	0	251	33	19	6	40	1.78
35473887--35473922	16	2.2	17	95	5	65	58	5	0	36	1.22
35473928--35474063	40	3.4	40	87	1	182	23	1	16	58	1.46
35479623--35479657	17	2.1	17	88	0	52	11	34	22	31	1.90
35480540--35480578	21	1.9	21	89	5	62	10	28	7	53	1.62
35488132--35488267	73	1.9	73	80	9	161	18	17	19	44	1.87
35495119--35495160	22	1.9	22	85	0	57	23	2	26	47	1.64
35495287--35495571	22	12.5	22	71	15	154	37	27	12	23	1.91
35495472--35495571	43	2.3	43	84	0	137	40	28	14	18	1.89
35495352--35495571	117	1.9	115	86	6	295	37	26	13	22	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35495671--35495797	60	2.1	61	81	5	152	40	19	9	30	1.83
35496383--35496422	14	2.7	15	88	7	64	42	12	12	32	1.80
35501161--35501250	45	2.0	44	82	6	110	44	18	12	24	1.84
35510915--35510988	37	2.0	37	92	7	123	41	21	9	27	1.84
35511084--35511270	93	2.0	92	96	2	356	31	14	8	44	1.75
35519902--35520190	22	12.4	23	77	14	183	34	26	14	23	1.94
35519929--35520308	117	3.3	115	84	4	458	36	25	14	23	1.92
35520120--35520176	21	2.6	22	94	2	98	33	28	21	17	1.96
35520181--35520243	26	2.4	27	86	7	85	46	22	9	22	1.80
35520238--35520290	21	2.5	21	93	0	88	35	26	15	22	1.93
35520238--35520297	21	2.9	21	85	5	77	36	26	15	21	1.93
35544480--35544527	21	2.2	21	85	3	60	20	8	25	45	1.79
35544593--35544913	26	13.6	24	77	13	221	35	26	14	23	1.94
35544609--35544805	91	2.1	91	80	12	197	35	26	14	23	1.94
35544786--35544839	21	2.6	21	90	0	81	35	27	18	18	1.94
35544593--35544970	116	3.3	115	86	1	513	35	26	14	23	1.93
35544900--35544959	21	2.9	21	87	0	84	36	28	15	20	1.92
35563252--35563344	35	2.6	35	80	11	93	63	8	0	27	1.23
35563685--35563946	133	2.0	133	86	1	364	26	17	42	13	1.86
35563929--35563985	29	2.0	29	86	6	80	12	21	45	21	1.83
35566696--35566763	28	2.4	28	95	0	118	26	13	17	42	1.86
35568907--35568948	22	1.9	22	90	9	68	69	2	7	21	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35569412--35569504	34	2.7	34	80	9	100	26	9	38	24	1.86
35569448--35569514	35	1.9	35	84	6	91	25	8	35	29	1.86
35569446--35569526	34	2.3	36	81	12	96	30	7	37	24	1.83
35570094--35570137	2	22.0	2	100	0	88	50	0	0	50	1.00
35585506--35585532	2	13.5	2	100	0	54	51	0	48	0	1.00
35593671--35593714	5	8.6	5	83	14	54	2	18	0	79	0.83
35595443--35595499	30	1.9	30	85	3	80	31	12	1	54	1.48
35622547--35622601	27	2.0	27	100	0	110	47	3	21	27	1.68
35628181--35628214	2	17.0	2	100	0	68	50	0	50	0	1.00
35629257--35629305	24	2.0	25	88	7	75	61	0	0	38	0.96
35630012--35630075	3	21.3	3	86	0	74	28	0	35	35	1.58
35630012--35630074	24	2.6	24	100	0	126	26	0	36	36	1.57
35639503--35639535	16	2.1	16	100	0	66	51	18	0	30	1.46
35668076--35668118	20	2.2	20	83	8	52	46	4	2	46	1.36
35669191--35669238	13	3.5	13	77	8	51	66	8	0	25	1.19
35669663--35669808	72	2.0	71	97	2	283	40	23	9	26	1.85
35670311--35670341	2	15.5	2	100	0	62	48	0	0	51	1.00
35676493--35676564	2	35.5	2	90	5	92	2	52	0	43	1.15
35677729--35677857	67	1.9	67	92	3	215	20	19	17	42	1.89
35692991--35693052	29	2.1	30	90	3	99	17	14	16	51	1.76
35700977--35701032	27	2.1	27	93	0	94	30	7	12	50	1.67
35701473--35701523	2	25.5	2	79	0	57	0	39	7	52	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35701523--35701553	10	3.1	10	95	0	53	41	0	6	51	1.27
35701531--35701623	46	2.0	46	95	0	168	24	7	16	51	1.70
35712777--35712807	3	10.3	3	92	0	53	0	35	0	64	0.94
35720474--35720538	30	2.2	30	91	0	103	33	15	36	13	1.87
35724353--35724386	14	2.3	15	90	5	52	2	11	8	76	1.12
35728885--35729001	55	2.1	55	95	1	207	21	22	11	44	1.84
35746189--35746267	23	3.3	23	74	16	63	51	0	1	46	1.08
35746189--35746253	27	2.6	24	85	9	78	53	0	1	44	1.09
35746208--35746285	22	3.5	22	79	6	70	47	0	1	51	1.09
35746302--35746352	26	2.0	25	88	3	75	43	0	7	49	1.32
35746323--35746376	22	2.5	22	78	3	65	37	1	5	55	1.34
35746172--35746481	113	2.7	113	81	11	341	39	0	4	56	1.21
35746441--35746504	33	1.9	33	84	6	85	39	0	3	57	1.14
35746459--35746516	27	2.2	26	87	3	89	43	0	1	55	1.10
35752215--35752253	8	4.9	8	87	0	51	0	48	12	38	1.42
35758415--35758507	2	47.5	2	90	4	145	50	0	1	47	1.08
35767077--35767125	3	16.3	3	100	0	98	32	0	0	67	0.91
35771106--35771157	24	2.4	22	81	15	63	53	5	3	36	1.43
35786720--35786784	2	34.0	2	85	14	93	50	0	1	47	1.10
35789932--35790027	40	2.4	38	83	11	106	42	5	6	45	1.51
35789926--35790016	40	2.2	40	86	3	119	46	5	6	41	1.53
35791226--35791269	23	2.0	22	81	4	52	43	0	4	52	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35791337--35791438	45	2.3	45	85	6	129	46	3	3	46	1.40
35796101--35796139	20	2.0	19	85	14	53	5	0	17	76	0.96
35797558--35797629	24	3.0	24	74	13	67	70	0	4	25	1.04
35797557--35797608	26	2.0	25	85	7	68	73	0	3	23	1.00
35797568--35797624	17	3.4	16	79	15	53	71	0	3	24	1.01
35797758--35797787	12	2.4	12	94	5	51	66	0	3	30	1.07
35802319--35802355	17	2.2	16	90	4	56	35	5	40	18	1.74
35807412--35807615	102	2.0	102	91	0	327	23	21	24	31	1.98
35809062--35809098	17	2.2	16	90	4	56	8	5	2	83	0.88
35809744--35809768	13	1.9	13	100	0	50	52	8	8	32	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103